Carg13991 (gene) Silver-seed gourd

Overview
NameCarg13991
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionArginine/serine-rich splicing factor, putative
LocationCucurbita_argyrosperma_scaffold_097 : 210318 .. 215025 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTTCAGTCTCGCGCCTGTGGCTGTGGCATGTTATCCTCTGCCACGACCTAACCCTAAACCCTTCGTCATCAATTCCGGTCGCTGCAGGCGGATCTCCAGCACGGAAGGCAAGCGCCAGTTCTTCTTTGAGTCCTTGCTGATCCGCGGTTCCAGGTTTTGGTGCAGTCTAGTTCGTCAGTTTCCCAGTCTTTGGTATGTTGTTTTCGTTAGTCGTTACTGCTTTTAATTACCGTATAATCAAACGGCGCTCATATGCGTGCTGTGGAGGAATATGATTAGTCAGACTTGTCCAATCTTGGTGGGTAGAACGTTCGCAATCTTGGATTTGCTTTTTTCTCTTTTTGTGTTCTTCATCTGGACTAGGGTGCGGCATTAGTGGATAAGTTTTGTTGAATTTAGTATTATGTGCTTGATTACTTTTATGTTTGCGTTCTCTCGGCGTGTTAAATGGACAACACCTCGTGCTGAATTATTTCACACACTGAAGCAGCTGAGTCGGTGGTTGAAATTTGATTTCTGCTTTCCTCCTAGTTTACTTCCATTGGGCTGTTGTCGTTGTTATTAATACAACACTGTAGTGGTTGGTGAACTTTAATCTAGATGCCTTTACTTAGACCTTTGGAACTGAGAAAATAGTCTACTGTGTTAGCACCTTTATTACGTTTTAAACTCGTTCCTCTTATTTCTGTAAATATGTTGATTCAAGATTGAATACACTTATCAATAACAGTATTAACCAACGTTTTGTTACCACCCAATATTAATAAATTGGCACGGAAGTCTGAATTTTTCTGTTCTTAATATCACTTCTGTGCATTCCCTGTACTGAATTGGTGTTACAATTTTCTTCAATTCATGTCCTGTCAGTTGGGATTTATTTACGTGAAGTAAAAGGGACCCGGCTTGTTAAATTCTGTTTCCATTTTGTTAATTGATATAACATTATGGTATTTCTATTTTGTTTTTTATGTGGAGTTCTCCCACTGACGACCTTAGATAATGATGTTGCACCAAGAGTATTAACACTAATGTTTTATATGACCACGTTCTTAAATATGTTGATAAGAAAGGCAGTAAACTTTTGCACCGTTCCTCTTTGGAATCGGATGCAACATAATTGAGGATTTCACCGATCATCTAAAGTTAATCCACAGAGGACATCCTGCATATTTTTTCAGGGTTGCTTTCTCAATGATGTTAAGAGAGATGAGTAAGGTAAAATTAATCATGTATGTCACTCTTGCCTCATCTCATGACACACATGCTTTCTTTATGATAGATGACAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGGGATATAGAAAGGGAATGGGAGAATCCTTGTGGAGTTATGGGTATTTTTTTTAAAAAGGAGATGCTTGATCACTCTCAGAAAAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATGGAGGATTGCTCTCTTGGTTTGCTTTGTTGTTTTTGGTTCTACCTTATTTTAAGAGTAAAGTTGTTGATACAGATGGCAATTGTGGTAGAAGATGGTTGTTCTATCCTTTTGATGATTCATTTAATAGATGTATGATGTTATGACATAACATGTGCAGGAATAATATTTCAAACGCTCGGACTAATTTGTTGCCTTGAAGATGAGTAGTCGTTTTTCCCGCACGATATATGTTGGAAACTTGCCCTCAGACATAAGAGAGAATGAAATTGAAGATTTGTTCTACAAGGTATATATTTTTAATCGTAGCATTTTTTTATTTTTTATCACGGTGTCTATGAGAAAATTGTTATTTTCTCTTTTCATATTTTTAATTTTGAATGCTATTCTTAATTATTTTATTTTTCTTAGTGGGATGTACATTACAATGGTGATTTACGGTCACTCAATCCTATTTTGATTTTTGGTTCAGAAAGAAAATCAATTAGATGTATTTTGTGGCTCATGCATATCTAAGGTTTAATTTTTGTGATATGGAGGCTACATGATTGATAGTTCCTTTGGCAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGGTATTGCTTTTGTTCTTTAGTTTGTATCTACTTTTAGCTGCATTTGTCAAACTATTTTCATGATATTATGTGCTTTCTGTTGTTAGTTTGAGAATGTTAGGGATGCAGAAGATGCCATTCGAGGTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTATCAACTACGTCTTCCTTTTGCTTTACTTCCTGGTCCTATTTTTATTTTATTTTATTAATATTTTCAGTTCTTTAATAGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCATCGTAGCAATTATGGTGGCAGTGGTGGTGGTGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGGTGTGGGGGTATATATGATGCATCCTTATAAGGAAGCGTGATACCGACAATTTCCCACGTGTAATATCCATTAGATTCATATTAATTTCAATGGTCTAATGAATGTTTCATTTCCCTCACAGTTATTGTACGGGGACTCCCATCTTCTGCCTCTTGGCAGGATTTGAAGGTGCTAGAGTCTTTATTGTTTAATGAAAGATGAAGTGTTTCTTTTATTGGACCATGTTGGTGACTTTACTGGTGTAATGCTTTCAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCATGACAGCGAAGGTTTAATCCTTATCTTTGATATTGTAATAATAACTGCTATTGTTTTTTTCTTTTTCTCTCTTTACAAGTTTCAACAAACTTCAGAACCTGAAATTTCTTCGCATTGATTTGATAATTAGATAAATATTTACCATTTGAAGTAAATGTGTCCAGGGACATTTGGGACTGTTGATTATACAAACTATGACGACATGAAGTATGCTGTAAGTTTTTCTGTAAGCGTGTTTCATCAGAAGTCCTGTATTATTTCAATTTGACTACTAATGTGTTTTTGTTATTTAGATTCGAAAACTTGACGATACAGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTACCTTAACCTTTTTTCTCTTGCCATAGTTAATTATTTTCAATTAACCTACTATTGTGCTGTTTTCATTTACAGCCTAGCCTCTTTCAGTGAGCATTTTAAGGAACTGGATTTGGTTTTTTTATGTCACTTGTGTTTGTGGATTACATTTGGTTGCAGGTGAAAAAGTACGAAGGCAGTCCCACTAGGGGTCGGAGCAGAAACAGAAGCAGAAGCAGAAGCCATAGTAGGAGCCGGAGCCGGAGCCGGAGCCGAAGTGCGAGGCGAAATAGGAGGTACCAGCTTTTTCTGTTTTACTGTTATCACTCTCACGCCCTCATTATTCTTTATAATGTTTTCTTGTACCATGCAGCAAATCAGCCGAACAATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCTATCCCCTGTTAAATCTTCAAGGTACCTGTGGCCTCTGCGTGTGTGTGTGTGTGTGTTTTCCTGTGTGTGGATTTTCTCAAGAAATTAAGAAATAATGTTTGACATACATTTTCTACTAAATATGCAGACGACGTTCAAAATCAAGATCTGGATCACCACGTGAGGTATGCAACGTCCAGTTTTAATGCTTCAAAAGCTGTAGACTTCATATTAATCTATTTATACTCATGGTATATAGAGCTATCTAATTGAATGATATGCGTCAATGGGTAGTGGTATTAAGAAAGAACAACCTTTGGATGAAGGTGTAGAATGAGCATGTTTGTTTTATGGTGTAGGTCATTGTTAGTTTTGTTGTTATTGGTGTCTGGGGTAGTTGCCAATGGGAACGGTAGAACCCATGATGGCGTTTTGTTCCGAATGAATCTCAATATTAGCCTTTATATTATGAACCATGGGTATGTCACTCTAGTTCGAGCATCTCGTGATGGTTCTAGATAACTAAATGTGATAATGTCATGGTACACTTAAGTTTTTTGGACACCTAAGTTACTAAAAATTTCGCCTGTCATTTCCATCCTTAGATTAAAGCTCACTAGATAGTTCGAATTTAGTGAAAGTAATGGAAATACGTGGTGTAAGTATTTGTGGTTCATTATGCTGCGGAATGAGATTAGCCCTAGTCTCTTTCCTGATTTCAAAACAATTCCTTAGGTACGATGAGTGAGTTAACTTAAGTATAGTTCAACTTATTAGTAGAATTGTCTTTGTACTAGACTCAAACGATGATTTGATTAGATTAGGGTCATACAACTGCACTAACCGAAGCTGAAATCTCTTTTTCAGGCACGAGAAGGTAGCGGATGATAATACGAAGCTATAATGATAGGAACGGTTGTTATAATATCGAGAATGCAACATTCTGTTGGATTTCATGTTGGTTTAGGACCTATTATATTATGCTCGACTGGTTATGAGGAGTTGAGTTATCTGAAGAATATGGGTTGAGTTGTATGGATATCTTTCAAATCCTTCTCATGTATTTGACCTGACCTACCATCATTTTGTTTGGAGACATCTTTAGGTATTTGCATGTCTTAAGTTTATTGCTCACTGGTTTTGGAATTTTTTTTTTTTT

mRNA sequence

TCCTTCAGTCTCGCGCCTGTGGCTGTGGCATGTTATCCTCTGCCACGACCTAACCCTAAACCCTTCGTCATCAATTCCGGTCGCTGCAGGCGGATCTCCAGCACGGAAGGCAAGCGCCAGTTCTTCTTTGAGTCCTTGCTGATCCGCGGTTCCAGGTTTTGGTGCAGTCTAGTTCGTCAGTTTCCCAGTCTTTGGTATGTTGTTTTCGTTAGTCGTTACTGCTTTTAATTACCGTATAATCAAACGGCGCTCATATGCGTGCTGTGGAGGAATATGATTAGTCAGACTTGTCCAATCTTGGTGGGTAGAACGTTCGCAATCTTGGATTTGCTTTTTTCTCTTTTTGTGTTCTTCATCTGGACTAGGGTGCGGCATTAGTGGATAAGTTTTGTTGAATTTAGTATTATGTGCTTGATTACTTTTATGTTTGCGTTCTCTCGGCGTGTTAAATGGACAACACCTCGTGCTGAATTATTTCACACACTGAAGCAGCTGAGTCGGTGGTTGAAATTTGATTTCTGCTTTCCTCCTAGTTTACTTCCATTGGGCTGTTGTCGTTGTTATTAATACAACACTGTAGTGGTTGGTGAACTTTAATCTAGATGCCTTTACTTAGACCTTTGGAACTGAGAAAATAGTCTACTGTGTTAGCACCTTTATTACGTTTTAAACTCGTTCCTCTTATTTCTGTAAATATGTTGATTCAAGATTGAATACACTTATCAATAACAGTATTAACCAACGTTTTGTTACCACCCAATATTAATAAATTGGCACGGAAGTCTGAATTTTTCTGTTCTTAATATCACTTCTGTGCATTCCCTGTACTGAATTGGTGTTACAATTTTCTTCAATTCATGTCCTGTCAGTTGGGATTTATTTACGTGAAGTAAAAGGGACCCGGCTTGTTAAATTCTGTTTCCATTTTGTTAATTGATATAACATTATGGTATTTCTATTTTGTTTTTTATGTGGAGTTCTCCCACTGACGACCTTAGATAATGATGTTGCACCAAGAGTATTAACACTAATGTTTTATATGACCACGTTCTTAAATATGTTGATAAGAAAGGCAGTAAACTTTTGCACCGTTCCTCTTTGGAATCGGATGCAACATAATTGAGGATTTCACCGATCATCTAAAGTTAATCCACAGAGGACATCCTGCATATTTTTTCAGGGTTGCTTTCTCAATGATGTTAAGAGAGATGAGTAAGGTAAAATTAATCATGTATGTCACTCTTGCCTCATCTCATGACACACATGCTTTCTTTATGATAGATGACAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGGGATATAGAAAGGGAATGGGAGAATCCTTGTGGAGTTATGGGTATTTTTTTTAAAAAGGAGATGCTTGATCACTCTCAGAAAAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATGGAGGATTGCTCTCTTGGAATAATATTTCAAACGCTCGGACTAATTTGTTGCCTTGAAGATGAGTAGTCGTTTTTCCCGCACGATATATGTTGGAAACTTGCCCTCAGACATAAGAGAGAATGAAATTGAAGATTTGTTCTACAAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCCATTCGAGGTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCATCGTAGCAATTATGGTGGCAGTGGTGGTGGTGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGGGGACTCCCATCTTCTGCCTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCATGACAGCGAAGGGACATTTGGGACTGTTGATTATACAAACTATGACGACATGAAGTATGCTATTCGAAAACTTGACGATACAGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTGAAAAAGTACGAAGGCAGTCCCACTAGGGGTCGGAGCAGAAACAGAAGCAGAAGCAGAAGCCATAGTAGGAGCCGGAGCCGGAGCCGGAGCCGAAGTGCGAGGCGAAATAGGAGCAAATCAGCCGAACAATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCTATCCCCTGTTAAATCTTCAAGACGACGTTCAAAATCAAGATCTGGATCACCACGTGAGGCACGAGAAGGTAGCGGATGATAATACGAAGCTATAATGATAGGAACGGTTGTTATAATATCGAGAATGCAACATTCTGTTGGATTTCATGTTGGTTTAGGACCTATTATATTATGCTCGACTGGTTATGAGGAGTTGAGTTATCTGAAGAATATGGGTTGAGTTGTATGGATATCTTTCAAATCCTTCTCATGTATTTGACCTGACCTACCATCATTTTGTTTGGAGACATCTTTAGGTATTTGCATGTCTTAAGTTTATTGCTCACTGGTTTTGGAATTTTTTTTTTTTT

Coding sequence (CDS)

ATGAGTAGTCGTTTTTCCCGCACGATATATGTTGGAAACTTGCCCTCAGACATAAGAGAGAATGAAATTGAAGATTTGTTCTACAAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCCATTCGAGGTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCATCGTAGCAATTATGGTGGCAGTGGTGGTGGTGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGGGGACTCCCATCTTCTGCCTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCATGACAGCGAAGGGACATTTGGGACTGTTGATTATACAAACTATGACGACATGAAGTATGCTATTCGAAAACTTGACGATACAGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTGAAAAAGTACGAAGGCAGTCCCACTAGGGGTCGGAGCAGAAACAGAAGCAGAAGCAGAAGCCATAGTAGGAGCCGGAGCCGGAGCCGGAGCCGAAGTGCGAGGCGAAATAGGAGCAAATCAGCCGAACAATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCTATCCCCTGTTAAATCTTCAAGACGACGTTCAAAATCAAGATCTGGATCACCACGTGAGGCACGAGAAGGTAGCGGATGA

Protein sequence

MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGSG
Homology
[Close]
BLAST of Carg13991 vs. NCBI nr
Match: XP_022958290.1 (serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958291.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958292.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958294.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958295.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata])

HSP 1 Score: 398.3 bits (1022), Expect = 2.1e-107
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGXXXXXXXRFGVSKRSEYRVIVRGL 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGXXXXXXXRFGVSKRSEYRVIVRGL
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGXXXXXXXRFGVSKRSEYRVIVRGL 120

Query: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180
           PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA
Sbjct: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180

Query: 181 RAYIRVKKYEGSPTRG 197
           RAYIRVKKYEGSPTRG
Sbjct: 181 RAYIRVKKYEGSPTRG 196

[Close]
BLAST of Carg13991 vs. NCBI nr
Match: XP_022996414.1 (serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996415.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996416.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996417.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima])

HSP 1 Score: 398.3 bits (1022), Expect = 2.1e-107
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGXXXXXXXRFGVSKRSEYRVIVRGL 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGXXXXXXXRFGVSKRSEYRVIVRGL
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGXXXXXXXRFGVSKRSEYRVIVRGL 120

Query: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180
           PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA
Sbjct: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180

Query: 181 RAYIRVKKYEGSPTRG 197
           RAYIRVKKYEGSPTRG
Sbjct: 181 RAYIRVKKYEGSPTRG 196

[Close]
BLAST of Carg13991 vs. NCBI nr
Match: XP_023533518.1 (serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 373.6 bits (958), Expect = 5.5e-100
Identity = 189/201 (94.03%), Postives = 189/201 (94.03%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSD-----HRSNYGXXXXXXXRFGVSKRSEYRV 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSD           XXXXXXX FGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDXXXXXXXXXXXXXXXXXXXFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRG 197
           KNPWARAYIRVKKYEGSPTRG
Sbjct: 181 KNPWARAYIRVKKYEGSPTRG 201

[Close]
BLAST of Carg13991 vs. NCBI nr
Match: XP_023533513.1 (serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533515.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533516.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533517.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.9 bits (943), Expect = 3.0e-98
Identity = 189/205 (92.20%), Postives = 189/205 (92.20%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYK----YGRILDIELKIPPRPPCYCFVEFENVR 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYK    YGRILDIELKIPPRPPCYCFVEFENVR
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKFLWQYGRILDIELKIPPRPPCYCFVEFENVR 60

Query: 61  DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSD-----HRSNYGXXXXXXXRFGVSKRS 120
           DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSD           XXXXXXX FGVSKRS
Sbjct: 61  DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDXXXXXXXXXXXXXXXXXXXFGVSKRS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD
Sbjct: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEGSPTRG 197
           DTEFKNPWARAYIRVKKYEGSPTRG
Sbjct: 181 DTEFKNPWARAYIRVKKYEGSPTRG 205

[Close]
BLAST of Carg13991 vs. NCBI nr
Match: XP_016670840.1 (PREDICTED: serine/arginine-rich splicing factor SR34A-like isoform X2 [Gossypium hirsutum])

HSP 1 Score: 353.2 bits (905), Expect = 7.7e-94
Identity = 167/194 (86.08%), Postives = 176/194 (90.72%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRTIYVGNLPSDIRE E+EDLFYKYGRILDIELKIPPRPPCYCFVEF+N RDAED
Sbjct: 1   MSGRFSRTIYVGNLPSDIREWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFDNSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGXXXXXXXRFGVSKRSEYRVIVRGL 120
           AIRGRDGYNFDGCRLRVELAHGGRG SSSD R  YG       +FGVS+ SEYRVIVRGL
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGQSSSDRRGGYG---GGAAKFGVSRHSEYRVIVRGL 120

Query: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180
           PSSASWQDLKDHMRKAGDVCFAE+S DS+GTFG VDYTNYDDMKYAIRKLDDTEF+NPWA
Sbjct: 121 PSSASWQDLKDHMRKAGDVCFAEISRDSDGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWA 180

Query: 181 RAYIRVKKYEGSPT 195
           RAYIRVK+YE SP+
Sbjct: 181 RAYIRVKRYESSPS 191

[Close]
BLAST of Carg13991 vs. TAIR10
Match: AT3G49430.1 (SER/ARG-rich protein 34A)

HSP 1 Score: 315.8 bits (808), Expect = 2.5e-86
Identity = 157/199 (78.89%), Postives = 171/199 (85.93%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRG---------PSSSDHRSNYGXXXXXXXRFGVSKRS 120
           AI+GRDGYN DGCRLRVELAHGGRG                    XXXXXXXRFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVSRHS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+ DS+GT+G VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYE 191
           DTEF+NPWAR +IRVKKYE
Sbjct: 181 DTEFRNPWARGFIRVKKYE 199

[Close]
BLAST of Carg13991 vs. TAIR10
Match: AT1G09140.1 (SERINE-ARGININE PROTEIN 30)

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-72
Identity = 132/192 (68.75%), Postives = 155/192 (80.73%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR++RTIYVGNLP DIR+ E+EDLFYKYG I+DI+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGR--GPSSSDHRSNYGXXXXXXXRFGVSKRSEYRVIVR 120
           AI GRDGY+FDGCRLRVE+AHGGR   PS   + S+Y            S+RS+YRV+V 
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASR------APSRRSDYRVLVT 120

Query: 121 GLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNP 180
           GLP SASWQDLKDHMRKAGDVCF+EV  D +G  G VDY+NYDDMKYAIRKLD TEF+N 
Sbjct: 121 GLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNA 180

Query: 181 WARAYIRVKKYE 191
           ++ AYIRV++YE
Sbjct: 181 FSSAYIRVREYE 186

[Close]
BLAST of Carg13991 vs. TAIR10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 252.7 bits (644), Expect = 2.6e-67
Identity = 129/197 (65.48%), Postives = 155/197 (78.68%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DIRE E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY-------GXXXXXXXRFGVSKRSEY 120
           AI GRDGY+FDG RLRVELAHGGR  SS D R ++        XXXXXXX       SE+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFXXXXXXXXXXXXXXXXXXXXXXSEF 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK GDVCF++V  D+ GT G VDYT Y+DMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFKNPWARAYIRVKKYE 191
           EF+N ++  Y+RV++Y+
Sbjct: 181 EFRNAFSNGYVRVREYD 196

[Close]
BLAST of Carg13991 vs. TAIR10
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 249.2 bits (635), Expect = 2.8e-66
Identity = 132/198 (66.67%), Postives = 154/198 (77.78%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRTIYVGNLP DIRE E+EDLF KYG ++ I+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYG--------XXXXXXXRFGVSKRSE 120
           AI GRDGY+FDG  LRVELAHGGR  SS D R +Y         XXXXXXX    S+RSE
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSYSGRXXXXXXXXXXXXXXXXXSRRSE 120

Query: 121 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDD 180
           YRV+V GLPSSASWQDLKDHMRK G+VCF++V  D  GT G VDYT+Y+DMKYA   LDD
Sbjct: 121 YRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDD 180

Query: 181 TEFKNPWARAYIRVKKYE 191
           TEF+N ++  Y+RV++Y+
Sbjct: 181 TEFRNAFSHEYVRVREYD 194

[Close]
BLAST of Carg13991 vs. TAIR10
Match: AT2G37340.1 (arginine/serine-rich zinc knuckle-containing protein 33)

HSP 1 Score: 68.6 bits (166), Expect = 6.8e-12
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 0 

Query: 4  RFSRT-IYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAI 63
          R+  T +YVG L S  R  ++E LF +YGR+ D+++K       Y FVEF + RDA+DA 
Sbjct: 7  RYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD-----YAFVEFGDPRDADDAR 66

Query: 64 RGRDGYNFDGCRLRVELAHGG-RGPSSSDHR 93
             DG +FDG R+ VE + G  RG    D R
Sbjct: 67 HYLDGRDFDGSRITVEFSRGAPRGSRDFDSR 92

[Close]
BLAST of Carg13991 vs. Swiss-Prot
Match: sp|A2RVS6|SR34A_ARATH (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 4.4e-85
Identity = 157/199 (78.89%), Postives = 171/199 (85.93%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRG---------PSSSDHRSNYGXXXXXXXRFGVSKRS 120
           AI+GRDGYN DGCRLRVELAHGGRG                    XXXXXXXRFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQXXXXXXXXXXXXXXXXXXXXXXXXXXRFGVSRHS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+ DS+GT+G VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYE 191
           DTEF+NPWAR +IRVKKYE
Sbjct: 181 DTEFRNPWARGFIRVKKYE 199

[Close]
BLAST of Carg13991 vs. Swiss-Prot
Match: sp|Q9XFR5|SR30_ARATH (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.1e-71
Identity = 132/192 (68.75%), Postives = 155/192 (80.73%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR++RTIYVGNLP DIR+ E+EDLFYKYG I+DI+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGR--GPSSSDHRSNYGXXXXXXXRFGVSKRSEYRVIVR 120
           AI GRDGY+FDGCRLRVE+AHGGR   PS   + S+Y            S+RS+YRV+V 
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASR------APSRRSDYRVLVT 120

Query: 121 GLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNP 180
           GLP SASWQDLKDHMRKAGDVCF+EV  D +G  G VDY+NYDDMKYAIRKLD TEF+N 
Sbjct: 121 GLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNA 180

Query: 181 WARAYIRVKKYE 191
           ++ AYIRV++YE
Sbjct: 181 FSSAYIRVREYE 186

[Close]
BLAST of Carg13991 vs. Swiss-Prot
Match: sp|O22315|SR34_ARATH (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 4.6e-66
Identity = 129/197 (65.48%), Postives = 155/197 (78.68%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DIRE E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY-------GXXXXXXXRFGVSKRSEY 120
           AI GRDGY+FDG RLRVELAHGGR  SS D R ++        XXXXXXX       SE+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFXXXXXXXXXXXXXXXXXXXXXXSEF 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK GDVCF++V  D+ GT G VDYT Y+DMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFKNPWARAYIRVKKYE 191
           EF+N ++  Y+RV++Y+
Sbjct: 181 EFRNAFSNGYVRVREYD 196

[Close]
BLAST of Carg13991 vs. Swiss-Prot
Match: sp|F4JHI7|SR34B_ARATH (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 5.1e-65
Identity = 132/198 (66.67%), Postives = 154/198 (77.78%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRTIYVGNLP DIRE E+EDLF KYG ++ I+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYG--------XXXXXXXRFGVSKRSE 120
           AI GRDGY+FDG  LRVELAHGGR  SS D R +Y         XXXXXXX    S+RSE
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSYSGRXXXXXXXXXXXXXXXXXSRRSE 120

Query: 121 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDD 180
           YRV+V GLPSSASWQDLKDHMRK G+VCF++V  D  GT G VDYT+Y+DMKYA   LDD
Sbjct: 121 YRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDD 180

Query: 181 TEFKNPWARAYIRVKKYE 191
           TEF+N ++  Y+RV++Y+
Sbjct: 181 TEFRNAFSHEYVRVREYD 194

[Close]
BLAST of Carg13991 vs. Swiss-Prot
Match: sp|Q9NEW6|RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans OX=6239 GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 186.0 bits (471), Expect = 5.3e-46
Identity = 107/194 (55.15%), Postives = 135/194 (69.59%), Query Frame = 0 

Query: 9   IYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRGRDGY 68
           +YVGNLP D+RE E+ED+F+KYGRI  +++K   R P + FVEFE+ RDAEDA+R RDGY
Sbjct: 11  VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGY 70

Query: 69  NFDGCRLRVELAH--GGRGP------SSSDH-RSNYGXXXXXXXRFGVSKRSEYRVIVRG 128
            FDG R+RVE     G RGP         DH      XXXXXXX     +R+ YRVIV G
Sbjct: 71  EFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHXXXXXXXXXXXXXXXXXQRRTGYRVIVEG 130

Query: 129 LPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFK-NP 188
           LP + SWQDLKDHMR AGDVC+A+V+ D  GT G V++T Y+D+KYA+RKLDDT+F+ + 
Sbjct: 131 LPPTGSWQDLKDHMRDAGDVCYADVARD--GT-GVVEFTRYEDVKYAVRKLDDTKFRSHE 190

Query: 189 WARAYIRVKKYEGS 193
              AYIRV++   S
Sbjct: 191 GETAYIRVREDNSS 200

[Close]
BLAST of Carg13991 vs. TrEMBL
Match: tr|A0A1U8HXW4|A0A1U8HXW4_GOSHI (serine/arginine-rich splicing factor SR34A-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107890791 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 5.1e-94
Identity = 167/194 (86.08%), Postives = 176/194 (90.72%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRTIYVGNLPSDIRE E+EDLFYKYGRILDIELKIPPRPPCYCFVEF+N RDAED
Sbjct: 1   MSGRFSRTIYVGNLPSDIREWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFDNSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGXXXXXXXRFGVSKRSEYRVIVRGL 120
           AIRGRDGYNFDGCRLRVELAHGGRG SSSD R  YG       +FGVS+ SEYRVIVRGL
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGQSSSDRRGGYG---GGAAKFGVSRHSEYRVIVRGL 120

Query: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180
           PSSASWQDLKDHMRKAGDVCFAE+S DS+GTFG VDYTNYDDMKYAIRKLDDTEF+NPWA
Sbjct: 121 PSSASWQDLKDHMRKAGDVCFAEISRDSDGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWA 180

Query: 181 RAYIRVKKYEGSPT 195
           RAYIRVK+YE SP+
Sbjct: 181 RAYIRVKRYESSPS 191

[Close]
BLAST of Carg13991 vs. TrEMBL
Match: tr|A0A1U8I3R0|A0A1U8I3R0_GOSHI (serine/arginine-rich splicing factor SR34A-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107890791 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 6.6e-94
Identity = 167/193 (86.53%), Postives = 175/193 (90.67%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRTIYVGNLPSDIRE E+EDLFYKYGRILDIELKIPPRPPCYCFVEF+N RDAED
Sbjct: 1   MSGRFSRTIYVGNLPSDIREWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFDNSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGXXXXXXXRFGVSKRSEYRVIVRGL 120
           AIRGRDGYNFDGCRLRVELAHGGRG SSSD R  YG       +FGVS+ SEYRVIVRGL
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGQSSSDRRGGYG---GGAAKFGVSRHSEYRVIVRGL 120

Query: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180
           PSSASWQDLKDHMRKAGDVCFAE+S DS+GTFG VDYTNYDDMKYAIRKLDDTEF+NPWA
Sbjct: 121 PSSASWQDLKDHMRKAGDVCFAEISRDSDGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWA 180

Query: 181 RAYIRVKKYEGSP 194
           RAYIRVK+YE SP
Sbjct: 181 RAYIRVKRYESSP 190

[Close]
BLAST of Carg13991 vs. TrEMBL
Match: tr|A0A1U8LV95|A0A1U8LV95_GOSHI (serine/arginine-rich splicing factor SR34A-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107930254 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 6.6e-94
Identity = 167/193 (86.53%), Postives = 175/193 (90.67%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRTIYVGNLPSDIRE E+EDLFYKYGRILDIELKIPPRPPCYCFVEF+N RDAED
Sbjct: 1   MSGRFSRTIYVGNLPSDIREWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFDNSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGXXXXXXXRFGVSKRSEYRVIVRGL 120
           AIRGRDGYNFDGCRLRVELAHGGRG SSSD R  YG       +FGVS+ SEYRVIVRGL
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGQSSSDRRGGYG---GGAAKFGVSRHSEYRVIVRGL 120

Query: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180
           PSSASWQDLKDHMRKAGDVCFAE+S DS+GTFG VDYTNYDDMKYAIRKLDDTEF+NPWA
Sbjct: 121 PSSASWQDLKDHMRKAGDVCFAEISRDSDGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWA 180

Query: 181 RAYIRVKKYEGSP 194
           RAYIRVK+YE SP
Sbjct: 181 RAYIRVKRYESSP 190

[Close]
BLAST of Carg13991 vs. TrEMBL
Match: tr|A0A2P2LQG4|A0A2P2LQG4_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.9e-93
Identity = 166/195 (85.13%), Postives = 175/195 (89.74%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRTIYVGNLPSDIRE E+EDLFYKYGRILDIELKIPP PPCYCFVEFEN RDAED
Sbjct: 1   MSGRFSRTIYVGNLPSDIREWEVEDLFYKYGRILDIELKIPPHPPCYCFVEFENARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGXXXXXXXRFGVSKRSEYRVIVRGL 120
           AIRGRDGYNFDGCRLRVELAHGGRG SS D R+ YG       R+G+S  SEYRVIVRGL
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGQSSIDRRTGYG--GSGGGRYGISHHSEYRVIVRGL 120

Query: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180
           PSSASWQDLKDHMRKAGDVCFAEVS DS+GT+G VDYTNYDDMKYAIRKLDDTEF+NPWA
Sbjct: 121 PSSASWQDLKDHMRKAGDVCFAEVSRDSDGTYGIVDYTNYDDMKYAIRKLDDTEFRNPWA 180

Query: 181 RAYIRVKKYEGSPTR 196
           RAYIRVK+YEG P+R
Sbjct: 181 RAYIRVKRYEGPPSR 193

[Close]
BLAST of Carg13991 vs. TrEMBL
Match: tr|A0A2P2LQH2|A0A2P2LQH2_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.9e-93
Identity = 166/195 (85.13%), Postives = 175/195 (89.74%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRTIYVGNLPSDIRE E+EDLFYKYGRILDIELKIPP PPCYCFVEFEN RDAED
Sbjct: 18  MSGRFSRTIYVGNLPSDIREWEVEDLFYKYGRILDIELKIPPHPPCYCFVEFENARDAED 77

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGXXXXXXXRFGVSKRSEYRVIVRGL 120
           AIRGRDGYNFDGCRLRVELAHGGRG SS D R+ YG       R+G+S  SEYRVIVRGL
Sbjct: 78  AIRGRDGYNFDGCRLRVELAHGGRGQSSIDRRTGYG--GSGGGRYGISHHSEYRVIVRGL 137

Query: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180
           PSSASWQDLKDHMRKAGDVCFAEVS DS+GT+G VDYTNYDDMKYAIRKLDDTEF+NPWA
Sbjct: 138 PSSASWQDLKDHMRKAGDVCFAEVSRDSDGTYGIVDYTNYDDMKYAIRKLDDTEFRNPWA 197

Query: 181 RAYIRVKKYEGSPTR 196
           RAYIRVK+YEG P+R
Sbjct: 198 RAYIRVKRYEGPPSR 210

The following BLAST results are available for this feature:
BLAST of Carg13991 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958290.12.1e-107100.00serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_0229582... [more]
XP_022996414.12.1e-107100.00serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996415... [more]
XP_023533518.15.5e-10094.03serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp... [more]
XP_023533513.13.0e-9892.20serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp... [more]
XP_016670840.17.7e-9486.08PREDICTED: serine/arginine-rich splicing factor SR34A-like isoform X2 [Gossypium... [more]
BLAST of Carg13991 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49430.12.5e-8678.89SER/ARG-rich protein 34A[more]
AT1G09140.11.2e-7268.75SERINE-ARGININE PROTEIN 30[more]
AT1G02840.12.6e-6765.48RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G02430.22.8e-6666.67RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G37340.16.8e-1242.86arginine/serine-rich zinc knuckle-containing protein 33[more]
BLAST of Carg13991 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A2RVS6|SR34A_ARATH4.4e-8578.89Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
sp|Q9XFR5|SR30_ARATH2.1e-7168.75Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3... [more]
sp|O22315|SR34_ARATH4.6e-6665.48Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3... [more]
sp|F4JHI7|SR34B_ARATH5.1e-6566.67Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
sp|Q9NEW6|RSP3_CAEEL5.3e-4655.15Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans OX=62... [more]
BLAST of Carg13991 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1U8HXW4|A0A1U8HXW4_GOSHI5.1e-9486.08serine/arginine-rich splicing factor SR34A-like isoform X2 OS=Gossypium hirsutum... [more]
tr|A0A1U8I3R0|A0A1U8I3R0_GOSHI6.6e-9486.53serine/arginine-rich splicing factor SR34A-like isoform X1 OS=Gossypium hirsutum... [more]
tr|A0A1U8LV95|A0A1U8LV95_GOSHI6.6e-9486.53serine/arginine-rich splicing factor SR34A-like isoform X2 OS=Gossypium hirsutum... [more]
tr|A0A2P2LQG4|A0A2P2LQG4_RHIMU1.9e-9385.13Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A2P2LQH2|A0A2P2LQH2_RHIMU1.9e-9385.13Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13991-RACarg13991-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 114..183
e-value: 5.1E-7
score: 39.3
coord: 8..78
e-value: 3.1E-22
score: 89.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 115..177
e-value: 1.3E-11
score: 44.0
coord: 9..76
e-value: 7.2E-19
score: 67.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 113..191
score: 9.849
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..82
score: 16.79
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 2..91
e-value: 4.7E-25
score: 89.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 112..190
e-value: 1.9E-23
score: 84.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..266
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..242
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..220
NoneNo IPR availablePANTHERPTHR43933FAMILY NOT NAMEDcoord: 1..259
NoneNo IPR availablePANTHERPTHR43933:SF5SERINE/ARGININE-RICH SPLICING FACTOR SR34Acoord: 1..259
NoneNo IPR availableCDDcd12599RRM1_SF2_plant_likecoord: 8..79
e-value: 1.93372E-43
score: 143.369
NoneNo IPR availableCDDcd12602RRM2_SF2_plant_likecoord: 113..188
e-value: 1.71009E-41
score: 138.408
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 6..184