Csa5G138510 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G138510
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Arginine/serine-rich splicing factor, putative; contains IPR012677 (Nucleotide-binding, alpha-beta plait)
Location	Chr5 : 3346962 .. 3355661 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGGTAGATTTCCTTGGTCTTAGCTAATTCTTTTCATGGTGTCTGTGCAAATTGTTATTTTCTCTGTTCATATTTTAGATGTGAAAGCTCCTTGCATTGGTGATCTACAGCTGTTCAAATTTATTTTTGTTTTAGTTCTGAAAAAATCTACTACATGTATTTCCTGGTTTCAGCAGATTTAAGGTTTAATTTGTTTGAACTTACAATTTTTATGTCTACATGATTGATATTTTCTTGGCAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGGTATCATGTTTTTTTTAATCTTTAGTTTGTACATACTTTTAGCTGTATTTTCAAAGTTCATGATATTATGTGCTTTCTGTTGTTAGTTTGAGAGTGTTAGGGATGCAGAAGATGCAATCAGAGCTCGTGATGGATATAATTTTGATGGTTGTCGTCTAAGGGTATCAACTAAGTTTTCTTTTGCCTTCATTTCCTGATTCCTGTCATTTTTGTTGTATTCATATGTTCAGTTTTTCAAATAGGTTGAGCTTGCACATGGTGGTAGGGGCCCTTCATCTAGTGATCGTCGTAGTAGTTATGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGGGAGGAGGGGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGGTGTGAGAATATGTTCAGTGCTGCTATAAGGAACCACGATGCTGGAAAATTTTCCCATGCATTGTATTTCATTAGGTCCATATGAATTCATTGCGCTAATGGATGTTTAATTTTTCTCAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTGAAGGTGTTGAAATCTTTATTGTTCAATGAAAGATCAAGGTTTTCTTTTATTGGATTATGTTGATATGATGAATTTACTGGAATAATGCTTTCAGGATCATATGCGCAAGGCGGGGGATGTGTGTTTTGCTGAAGTTTCACGTGATAGCGAAGGTTAAATACACCTTTTTCAGCTATTGTTTTTTTTTTCCAGTTTGTGCCCAACGGTTTTTCCGTGTAGGAATTACTTAGCAAGCAAATGTTGCCTATTTTTTCTTTTTTACAAATTTAACTCATTTAATAACTGATATGGGTTAAAATGTAAGCCTGTGTGTCATCCATAATTCTTACTGCACATATTTAATTAAGCATTTGTTCCTTGCCTGGCTTCAGAACATAATGTGATGGAGGGGTCTTTATAGTTGTATTTATCTCTAAAAAGTGGTTTACTTTCTATTTGGGGTCTATGAATCAAGCTTATGAAAGTTTGGCATATCTCTGTTAGAGAAATGCAAGTCAAACAATCTTTGATAATTCTTATCTTTTGGACAACAAGGTGTTCGGATAGAGAAATGCAAGTCAAACAATCTTTGATAATTCTTATCTTTTGGACAACAAGGTGTTCGGATAGAGAAATGCAAGTCAAACAATCTTTGATAATTCTTATCTTTTGGACAACAAGGTGTTTGGATAGCTGAACTTTTCTTGAAAGTTCCCCTTGTGTTTCCACCAAAAGAGGAGGCTAACCGCAAAAAGGGCCTCTAATCCAGATTCCCAGAAAAATGAGTTCTAATGGGTAGTTACAAAAAGGTTTTGCCACCTAAGCTCACAAGGAAAAAGGAAATGTGACAAGAGATCAAAGATAGTTTAAGAATGCTCAAGCCCTATAAAAATTCTATTGTTCCTCTTCTAATAGATTCCAAATAATAGCACTTTGGCTTGCCACAAAAAAATTTATTTCTTGCAGAAGGGGATGGAGAAAGTACTTCTTGATCATTCCCTGTAGCCCTTGTCTAACCTAGTGAAGATCAAACTGCTCAAAAAGTTGATTCAAAACTACATAAGCTATATAGCACAAGTCCAATGAATTTGATAATTGATTGCTGGTTGAAATTCTGAAATTTGTTCTATGGATGGATTTCTTGCAATTTCTTGCATCCTTGAATTTGATTGTTGGCCATCATTTTCACTTCCAACATTAACTTCTCAATAGCTTGTTGGAGCATGACCGTTGAGGTTTGCCTCATAAACCAGCCACTAAAGTTTTCAAATTGCCAAGGTTTGTGAGGAAGTAGAGGGATGCTTCTGCATCATGAGATTGGATTTCAGGAAGCTTGTTGGTGTTCTTGATCATCAATTCACCATCAGGCCTGTTCATGAAGGCTCTGATATCAATTTGATGTAGATTAAGAATTTTGGAGAATTCTTGAAGGAAATGTATTATTCATTTTGTTCAGAAGACTCTTATTTATAGAGTTGTAATACACGTTAGCTTGGGGTAAGGAGGTTAACTAAACTATTTAACCCTATTATCCAGTTAACCCTATTCTTCTTACCCCAATTTTCACCTTCTACATCGAGGTAAGGTTAGAGACCAGAGCGAGAAAGGTTTGACCAAATAGAGAAAAAAATGATTGACATGAAAAATTGACAAACTTGGAATCTAAATATGAACACCCCTTCTTTTTTAGGGTATAGCAAAACTCTCAAGCAAATGGAGAAGATCGATAATGTATTTGTTTCCCTTTCAGACAAAAGACAACAGCCCTTTGGCTTGCCTTTTAATGAGCTTATTTCTGGATGTTATGAGGCAAGAGCAATAATCTTTTTTTTTTACTCTTCTAGTTTTGATCATTTTGTGGATTTGGTTTTTTCTACTGCTTTGAATTGGTGCAAATCAAAGGATACCCTTCTTTAAGTAACATTATTTATTAATTTACCTCACACATGAATGTATAGGCAAATTTGTAATAAAAAATAAACTTGGGAGAGAGTACGGAAGATGGAAGATGAAGAACACCACTTTCATCCACAAAGATGAAAAACAACACTTTCAAACACAAATCCTTCAAAATCCCATAGTTCAGTACAAATATTCCAACAGAAAAAAATTGCTAAAATATCTTGAACATGCTTTGAAAAATGTTAAAAATCTCCAAAACTCCAATTTGACATAAGTTACACCGAAACTTAATGGATATTCAAGAACATAAAATAAAACCCAAAAACTTGCTCAAAATTAAGATTTTGAAAATGACAATGCTAGTGATAGTGATCTCAAGGTATGACATCAAAGGTGTCAGAAGATTTCGTGGTGGTAGCTGGAATCGACATCCAGAATCGGTTGGAGAGAGCAAATAACTCCCCAAATAAAATCTCACTGACGGTCCACGACGGTAGATTGCACGACTAGAGTGGGGGCAACAGTCAAGGGAGGTGACAGGGACAGAAGTGGCGAGTTTAGAGGTGTTGCTTATTGAAGGAAGAGGGGGAGATGCTGCAAGTGTGCTTCTTCAGCTTCTCCAAGTTTCATTTTTTATTACAAATTTACCCCTCTCCTCTCTTCATGTGTGAGTAGGATTAATAAACAATATTTAATTTAAAAAGGGATTGATTGCAACCATTTAAAAACTATAAGGGTACAAATTGAAAATTAATGGGTGTGATTGTTACCAACTCCATAGTAAGGGATGGTTTGTGCAATTTTCCAAAAAAAAAAAAAAAAAAAAACTCTGATAGAACACCAAGTAATTGTGTTCTAGTTTGATTGAAAATACTTCAAAGATTACAAAGAAGAATTTTTGAACAAACAATTGTGATTTCAAACATATAGAAAACTAAGAACACCAAAAGTATAAAAAAACATAACCTTCTTTGTCTATCCTGTCTCTCAAGGAAGAGTGCAGAAACCAAAAACTACCCAAAAACTGAACAACCCTCTCTTTCCCACTCCCCTCGTATTTAACTGCTCCTATCTTTTAACAGACTGTAACTTCCCCCTTACTAATGCTTAATGTGCCCTCACCCTCAATAACTTGGGACAATCTCGGGGTGGAATGATGTACTTGCTTGGGACAATCTCGGGGTGAACTAATGTGCCCTCACCCTCAATAACTCTTGCATTTTCTTGCTTCTTTCTTCTGCTATATTGAAGCACAATTTGGGGTCTAAAATACTCCCATCCCTTTTGAAATAAACACAATAGGATGTGGGGATTGGATGAATCATGTGTTGATATGTTCTACTTTCCTGGGGAGGAGAGATCTGAGGCTCATTTTATGTTATTGATGTCTTGATCCCTCTAGTGGTGTCTCAACTAAGTTTACCTTTTTTTTTTTTATTGAAACAGAAGCAAACATTTCGTTGGTATAATGAAAAGAGCTATTACTCATAGTACAATGAAACAAGAATCATAAAAGCCACTAAGGCTAGAACTAGGGATCGAGAGGAATACTAAGGCTAGACCTCAACTAAGTCTACCACCTTCTTAAGGTGGTTTTGTTGCTTTTGAGCTTAAATACTCACGATAAGCTCCAAAGGTCCAACTTATTCAATATTTTTGAGGGTGAGCTATATGCTTAAGAAGGTTATGATTGGCTGCTTGAAGGGCTTTTATTGGTTATGGTTCACTAGCAGTGATAAAATCTAGTGGGGATCTGGTACTCACTATCTTCTCTAGATTCTATGGAGAGAAGAAAATAGTTTGTTAGTCGAAGATGAGTATATTTTAATAAATTATTTTTGGGCTTTTGTTTAGCATACATCTTCTTGATGGTGCACAAATTACAGCCTTTTGATGATTATTAACAATTGAAAGGTGCTCCTCCATTAGCTCTTTTGGAAGGAGTCCTGTCAACCCCTGTCCTTTGGTTGCTTATTTCCGTTCAATTTGAACATATACCATTTTCTTCAGGAAAAAAACCATAACACCTTCTCTTGCAACTTCATATCATCATTATATTTTGTTGTATGATAATGGTGTTTTGGTGTTAACATTGTGTTATGTTGGCTTTTTTGATATTTGAAGAGGCAATGTTTTTTATTAGTTTATAATCCAGGGGTGTATTATCAGTAAAATTTACTTTTATAATGTTTCTTTTTGACACGTAACATAACACACTTGACATTCATTTACACTAACAACTAGGAGTTGTCGATTTTATTCTCCTTTTAAAAATTCCATCAAGCTTAGAAACTGAAATTACTTTGAATTGATTTGGTAATTAGATTAGATATTTACTATTTGAAGTCAACATGTCCAGGGACGTTTGGGATCGTTGATTATACTAACTACGACGACATGAAATATGCTGTAAGTTTTTCTAAAAAGCACATTTTTTCAGAAGTTCTGCATTACTTTATTTTGATAGTTGATGTTTTTCTATTATTTAGATACGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTACCTTAACCTTTATTCGCATGCCATTTTGGTTATTTCGAAATAGCCTAATGCTGTGATATTTTTCATAATCAGCACACCCTCTTTCTTCAGCACTTAAGAAACTGGATTCAGTTGTCTGTGCCCCTTGTTTGTGGATAACATATCATATATGGTTGCAGGTGAAGAAGTACGATGGAAGTCCCACTAGGAGCAGGAGCAGGAGCAGGAGTAGAAGCCGTAGCCGTAGCCGTAGCCGTAGCCGAAGCCGAAGCCGGACTGCTAGACGAAATAGGAGGTTCCACTCTTTTACTGTTGGTTTGTATCACCCTCATGGCCTCTTTTGCGTTGTTGTTGTAATGTTTTCTTGTATGCTGCAGCAAATCAGCAGAACGACGATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCCATCTCCTATTAAATCTTCAAGGTACTTTGGCCTATGCGTGCTTTTTCCCAAAAGTTTGGATTTGCTTGACAAACATTTTTCTGCAAAAATATGCAGGCCACGGTCAAAATCAAGATCTGGATCACCACGTCAGGTATGCAACATTTGGTTTTAATGCTTCAAAAACTGTAAACTTTATAGCATCTATTTACACTCATGATAAATAATGTTATCTGAGCTGTATAAATTGGTAGTGATGTTTAAAAAGAACCTTTGGATAAAGGTTTAGAAGGGGTGTTTTTTTTATGGGGGAGGGAATGGGTACGATGGTTATCTTGTGGTCATCATTTTGTTTTTGGTAGCATGAGTATCTATCTTGTTGCCAATGGAAGTGATCAGAAGCTGAGAAGCATGGGATATGTATTCGATAATTATGGCACGTCATTTTTAAAAATATAGGACAACACGATATGGAATCATTCATTAAAACATACCCTTATTAGAAACACATAATTTTTTTATACAAGAAAGACATTTAAAGTTGATGATTTTATGCATTTATATGCTTAAAAACTAGTTGGTTGTATTTTGGATTCAAATTTTACTTTTATTATATATTTCTAATTAGTACGTGCAATAAGCATGTTGATCGTTTATATGCTTAACAATTGGAATATTGTTAAGGGGGATTTGGAAGGTGTGTTTAAAGAGTTCTTCAAAAGAGCTATCTTAAATCGATCCCTGGTTGAGACTTATGTGTGTCTAATAGAGTTGAGGATTTTAGGCCTATTAGTCTAATCACCTGTATTTATAAGATTTTGGATAAGGTCCTTGCTAATCGGTTAAGGAAAGTGATGCATTCTACAATTTTCGAGGCGCAAGGAGCTTTTTTAGCAGGTAGAGAGATCTTAGATCAATTCCTTATAGTCAATGAGGCAATTGAGGATGTTCATCAGAGGAAAAAGGAGGGAATCGTACTTAAGCTTGATTTTGAAAAGACCTATGATCATGTTGATTGGGATTTTTTGGTAAGGTGATAATGAAGAAAGGCTTTGCCTTTAGATGAAGGATGTAGATGTGGGGATGTGTTAGGAATGTTCAGTACTCTATCCTTGTCAATGGAACTCCTAAAGGTTCGATCTAAGCCTCTAGAGGTTTAAGGAAGCCAGAGTGTGCAGTACTCAAACCAAGCTTCTTGATGTCCTCAATCGTCTCATCCTTAAAGGAGTAGATGGAAACATTATTGAATCCCTTAGGATTGGCTCAAATGAGGTGGCTTATCCTACCTCCTGTTTGCTGTAACACTATCCTGTTTTGTTAGGGTAAAGAGGAGTCTTTTATGATCCTTAATCATATGGTGGAGTTTTTCGAGGATGTGTCTGGTCTTGAAATCAATAGGAGTAAATGTTAAATTCTAGGGATTATCCGTGACCAAAGGAAGATCGGAAGATGGGCGGAGTTGTTTGGATGTGAGATTGGATCTTTTCCCTCTTCCTACCTTGGTCTCTCTTTCGGTGGTAACTCGGAAGTTACATCGTGTTTGGACCATATTTCTGAGAAGGTTAAGGAAAGGCTTCTCAATTGGAAGAAAAGTTTCTTTTCCAAGGCAAGCTAGTTAACTTTGATTAGATCGTTTCTTAGTTGTATCTCAGTTTATCACTGTCCCCTTTTTTGTGTCCCTAGTTCAGTTTGTAAGTGTTGAAAAATCCATGAGGACTTTCTTTGGGAGCAGGTGGATGAAGGGAAGGGCTTTCATTTGGTCAACTGGTAGATGGTTGGAAGACCTATTAGTAAGGGAGGGTTTAGAGATTGGCAATTTAAGGTCTCACAATAGAGCTCTCTTGGCTAAGTGGCTTTGGGCTTTGCAATTAAACCCAAAGCCTAGTGGTTGGGAGACTTGTTATTTGTGAGCAAGTATGACAATCGCCTGTACGATTGAGTGGTGAAAGGGTTAAAGGCACACATTGAAATCCGTAAAAAGATATCTCGTTTGAACTTTCTACCTTTTCTCATTTTGTGAAGTGTGTGGTGGGAATGGAAAGGACATTTTTTTGGGAGGATCAGTGGGTGGGGGAGGGCGCTCTTTGTTCTGTCTTTCCTCATATTTGTCACCTTTCTTCCTTTAAAAATTGCACGAGTTCTGACTTCTTGATTTGGTCCGGTCTTTTTCCTTTGGGTTTTTTTGTAATCTGTCCAATAGGGAAACAATGGAGGTTGCCTTTCTGCTTTCTTTACTGGAGGAGGGGTCCTCTTTTAGTGAAGGATTAAGATTTCCAAGAAAGGTTTTGTATCCGGCAAGTCTTGTTTGGTCGTGTTAACACTTTTAATAGACTTGCTAGAAGGAAAACTTCACTTCTGGGGCCTTTTTGTTGCATTTTGTGCCGTAAGGCAGAGGAAGATCTGGACCATCTCTTGTGGGGCTGCCAGTATGTGAGATCTGTATGGAGCTTATCCTTGCAGGAGTTCGATGTCAGCATTGCTGGTTAGAGAGATGTGCATGGGAAGAAAGGCCACTTGTTATGGCTTGCTGGGGTGTGTGCACTTATGTGGGATATTTGGGGGGAGAGAAATGATATAGTTTTTATAGGGAAGAATAGAGACTCCAGTGAGATTCGGTCTTTAGTGAGATTTCACGTGTCCTTTTAGGCTTCGGTTTCATAGCTTTTTTTGTCACTATTTGCTTGGAAACATTAATCTTAGTTGGATCCCCTTCCTTTAGTGGGGTTTTTTTTTTTTTGTTGAGCTTTTCTTTTTTGTATGCCCTTATATTCTTTAATGAAATTTGTTTATGTAAAAAAAATCCAATGCATTTGGTCTTATTTTGACTTTGTACAACGTCTAATAAACACATCTATTGCACTAAATACTTTGAATAAGTAAGATAATGGAAATTCCTTTTTCAGGCACGAGAAGGAAGCGAGTGA

mRNA sequence

ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAGTGTTAGGGATGCAGAAGATGCAATCAGAGCTCGTGATGGATATAATTTTGATGGTTGTCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGGGGCCCTTCATCTAGTGATCGTCGTAGTAGTTATGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGGGAGGAGGGGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCGGGGGATGTGTGTTTTGCTGAAGTTTCACGTGATAGCGAAGGGACGTTTGGGATCGTTGATTATACTAACTACGACGACATGAAATATGCTATACGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTACGATGGAAGTCCCACTAGGAGCAGGAGCAGGAGCAGGAGTAGAAGCCGTAGCCGTAGCCGTAGCCGTAGCCGAAGCCGAAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCAGAACGACGATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCCATCTCCTATTAAATCTTCAAGGCCACGGTCAAAATCAAGATCTGGATCACCACGTCAGGCACGAGAAGGAAGCGAGTGA

Coding sequence (CDS)

ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAGTGTTAGGGATGCAGAAGATGCAATCAGAGCTCGTGATGGATATAATTTTGATGGTTGTCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGGGGCCCTTCATCTAGTGATCGTCGTAGTAGTTATGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGGGAGGAGGGGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCGGGGGATGTGTGTTTTGCTGAAGTTTCACGTGATAGCGAAGGGACGTTTGGGATCGTTGATTATACTAACTACGACGACATGAAATATGCTATACGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTACGATGGAAGTCCCACTAGGAGCAGGAGCAGGAGCAGGAGTAGAAGCCGTAGCCGTAGCCGTAGCCGTAGCCGAAGCCGAAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCAGAACGACGATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCCATCTCCTATTAAATCTTCAAGGCCACGGTCAAAATCAAGATCTGGATCACCACGTCAGGCACGAGAAGGAAGCGAGTGA

Protein sequence

MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGSE*

Homology

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BLAST of Csa5G138510 vs. Swiss-Prot
Match: SR34A_ARATH (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana GN=SR34A PE=2 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 1.2e-120
Identity = 221/305 (72.46%), Postives = 243/305 (79.67%), Query Frame = 1


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR      GG GGGG G GGGGGGGG  RF
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR------GGYGGGGSGYGGGGGGGGSARF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKY
Sbjct: 121 GVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSK 240
           AIRKLDDTEFRNPWAR +IRVKKY+ S +RSRS SRSRSRSRSRSRSR R R+  R+RS 
Sbjct: 181 AIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSL 240

Query: 241 S-----------AERRSVSRSVSRSRSPSPIKS-------------SRPRSKSRSGSPRQ 282
           S           + RRS+SRS+S+SRSPSP K              SR RS+S S SP +
Sbjct: 241 SRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSPPK 299

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BLAST of Csa5G138510 vs. Swiss-Prot
Match: SR34_ARATH (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.0e-92
Identity = 180/286 (62.94%), Postives = 214/286 (74.83%), Query Frame = 1


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG GGG G G GG          
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSR-------- 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           G S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT Y+DMKY
Sbjct: 121 GPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRSRSRSRSRTAR 240
           A++KLDDTEFRN ++  Y+RV++YD      SP+R RS S+SRSRSR RS SRSRSR+  
Sbjct: 181 ALKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRS-- 240

Query: 241 RNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGS 282
           R+RS+S + +S  RS ++S S SP     PRSKSRS SPR++R  S
Sbjct: 241 RSRSRSPKAKSSRRSPAKSTSRSP----GPRSKSRSPSPRRSRSRS 271

HSP 2 Score: 159.8 bits (403), Expect = 4.3e-38
Identity = 115/305 (37.70%), Postives = 148/305 (48.52%), Query Frame = 1


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGG------------------ 120
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG GG                  
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGRR-SSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 --------GGGGGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDV 180
                                 GG    S+         G+     ++D+K  ++K  D 
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 CFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRN-PWARAYIRVKKYDGSPTRS-- 240
            F      S G   + +Y +  D +   R    ++ R+    R+  R +    S +RS  
Sbjct: 181 EFRNAF--SNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPK 240

Query: 241 ------------------RSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSR 259
                             RS+SRS S  RSRSRSRS   + ++  SKS  + S ++S   
Sbjct: 241 AKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSPIH 300

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BLAST of Csa5G138510 vs. Swiss-Prot
Match: SRSF1_XENTR (Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis GN=srsf1 PE=2 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.6e-75
Identity = 159/256 (62.11%), Postives = 185/256 (72.27%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           IYVGNLP DI+  +IED+FYKYG I DI+LK     P + FVEFE  RDAEDA+  RDGY
Sbjct: 18  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77

Query: 69  NFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGG----GRFG-VS 128
           ++DG RLRVE    GRG  +  R    GGGGGGGGGGGGGGGGGGGGGG    GR+G  S
Sbjct: 78  DYDGYRLRVEFPRSGRG--AGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPS 137

Query: 129 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIR 188
           +RSEYRV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT G+V++   +DM YA+R
Sbjct: 138 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVR 197

Query: 189 KLDDTEFR-NPWARAYIRVKKYDG--SPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSK 248
           KLD+T+FR +    AYIRV K DG  SP+  RSRSRSRSRSRSRSRS SRSR+    RS+
Sbjct: 198 KLDNTKFRSHEGETAYIRV-KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSR 257

Query: 249 SAERRSVSRSVSRSRS 257
            + R S   S SRSR+
Sbjct: 258 GSPRYSPRHSRSRSRT 267

[Close]

BLAST of Csa5G138510 vs. Swiss-Prot
Match: SRS1A_DANRE (Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a PE=2 SV=2)

HSP 1 Score: 274.2 bits (700), Expect = 1.5e-72
Identity = 154/252 (61.11%), Postives = 180/252 (71.43%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           IYVGNLP DI+  ++ED+FYKYG I DI+LK     P + FVEFE  RDAEDA+ ARDGY
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76

Query: 69  NFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRFG-VSKRSE 128
           ++DG RLRVE    GRG          GG GGGGGGGGGGGGGGGG   GR+G  S+RSE
Sbjct: 77  DYDGYRLRVEFPRSGRG-------MGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSE 136

Query: 129 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDD 188
           YRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT G+V++   +DM YA+RKLD+
Sbjct: 137 YRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDN 196

Query: 189 TEFR-NPWARAYIRVKKYDG--SPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAER 248
           T+FR +    AYIRV K DG  SP+  RSRSRSRSRSRSRSRS +RSR+    RS+ + +
Sbjct: 197 TKFRSHEGETAYIRV-KVDGPRSPSYGRSRSRSRSRSRSRSRSNNRSRSYSPRRSRGSPQ 256

Query: 249 RSVSRSVSRSRS 257
            S   S SRSRS
Sbjct: 257 YSPRHSRSRSRS 257

[Close]

BLAST of Csa5G138510 vs. Swiss-Prot
Match: SRR55_DROME (Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1 SV=4)

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-43
Identity = 121/272 (44.49%), Postives = 151/272 (55.51%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           +YVG LP  ++E ++E  F  YGR  DI +K       Y FVEFE  RDA+DA+   +G 
Sbjct: 6   VYVGGLPYGVRERDLERFFKGYGRTRDILIKNG-----YGFVEFEDYRDADDAVYELNGK 65

Query: 69  NFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRFGVSKRSEY 128
              G R+ VE A G    S+ DR     GG  GGGGG             R+G   R+EY
Sbjct: 66  ELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEY 125

Query: 129 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDT 188
           R+IV  L S  SWQDLKD+MR+AG+V +A+  +      G+V++ +  DMK AI KLDDT
Sbjct: 126 RLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNE-GVVEFASLSDMKTAIEKLDDT 185

Query: 189 EFRNPWARAYI----RVKKYDGSPTRSRSRSR-SRSRSRSRSRSRSRSRTARRNRSKSAE 248
           E      R ++    R  +  G     R RSR S SRSRSRSR RSRSR +  +RSKS  
Sbjct: 186 ELNG--RRIHLVEDRRGGRSGGGGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKS-R 245

Query: 249 RRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPR 276
            RS SR   RS+S SP+K SR RS+SRS   R
Sbjct: 246 SRSKSRG-GRSKSKSPVK-SRSRSRSRSNKSR 266

HSP 2 Score: 177.6 bits (449), Expect = 2.0e-43
Identity = 125/309 (40.45%), Postives = 162/309 (52.43%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           +YVG LP  ++E ++E  F  YGR  DI +K       Y FVEFE  RDA+DA+   +G 
Sbjct: 6   VYVGGLPYGVRERDLERFFKGYGRTRDILIKNG-----YGFVEFEDYRDADDAVYELNGK 65

Query: 69  NFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRFGVSKRSEY 128
              G R+ VE A G    S+ DR     GG  GGGGG             R+G   R+EY
Sbjct: 66  ELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEY 125

Query: 129 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDT 188
           R+IV  L S  SWQDLKD+MR+AG+V +A+  +      G+V++ +  DMK AI KLDDT
Sbjct: 126 RLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNE-GVVEFASLSDMKTAIEKLDDT 185

Query: 189 EFRNPWARAYIRVKKYDG---------------SPTRSRSRSRSRSR------SRSRSRS 248
           E      R ++   +  G               S +RSRSRSR RSR      SRS+SRS
Sbjct: 186 ELNG--RRIHLVEDRRGGRSGGGGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRS 245

Query: 249 RSRSRTAR-----------RNRSKSAERRSVSRSV----SRSRSPSPIKSSRPRSKSRSG 282
           RS+SR  R           R+RS+S + R VS+S     SR+RS SP +    RS+SRS 
Sbjct: 246 RSKSRGGRSKSKSPVKSRSRSRSRSNKSRDVSKSKSKSHSRTRSRSPKRERDSRSRSRSV 305

HSP 3 Score: 63.2 bits (152), Expect = 5.4e-09
Identity = 83/284 (29.23%), Postives = 111/284 (39.08%), Query Frame = 1


Query: 2   SSRFS---RTIY---VGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESV 61
           SSR+    RT Y   V NL S +   +++D   + G +   +     R      VEF S+
Sbjct: 109 SSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGV--VEFASL 168

Query: 62  RDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGG 121
            D + AI   D    +G R+ +            DRR           GG  GGGGG G 
Sbjct: 169 SDMKTAIEKLDDTELNGRRIHLV----------EDRR-----------GGRSGGGGGSGR 228

Query: 122 GGGRFGVSK-RSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTN 181
           G  R   S+ RS  R   R   SS S    +   +  G    ++    S          +
Sbjct: 229 GRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSRSRSRSRSNKS 288

Query: 182 YDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRS---RSRS 241
            D  K   +    T  R+P        K+   S +RSRS S+  SRSRSRS+S    SRS
Sbjct: 289 RDVSKSKSKSHSRTRSRSP--------KRERDSRSRSRSVSKRESRSRSRSKSIHRDSRS 348

Query: 242 RTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPR 276
           R    +   S  + +        RS S    SR RS+SRS SP+
Sbjct: 349 RPPTVSFKSSFYKFTTMPFFCSDRSASAENKSRSRSRSRSASPK 361

[Close]

BLAST of Csa5G138510 vs. TrEMBL
Match: A0A0P5QR27_9CRUS (Putative Serine/arginine-rich splicing factor OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.8e-44
Identity = 123/286 (43.01%), Postives = 160/286 (55.94%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           +Y+G LP  +KE +IE  F  YG++ ++ +K       Y FVEFE  RDA+DA+   +G 
Sbjct: 5   VYIGGLPYRVKERDIERFFRGYGKLREVLIKNG-----YGFVEFEDYRDADDAVYELNGK 64

Query: 69  NFDGCRLRVELAHG-----GRGPS--SSDRRSSYGGGGGGGGG------GGGGGGGGGGG 128
              G R+ VE A G     GRG S  S   RS   G   G  G         GG GGG  
Sbjct: 65  ELCGERVTVERAKGSPRARGRGSSGGSDSGRSPRNGRDHGRSGFRNSSNSRSGGKGGGDN 124

Query: 129 GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNY 188
              R+G   R++YR++V  L S  SWQDLKD+MR+AG+V +A+  +      G+V++ +Y
Sbjct: 125 APPRYGPPTRTDYRLVVENLSSRVSWQDLKDYMRQAGEVTYADAHKQHRNE-GVVEFASY 184

Query: 189 DDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTAR 248
            D+K AI KLD T+      R    V+  D     SR RSRSRS SRSRSRSRSR R+  
Sbjct: 185 SDLKTAIEKLDGTDLN---GRRIKLVEDKDSGRRGSRRRSRSRSSSRSRSRSRSRRRSRS 244

Query: 249 RNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGS 282
           R+RSKS  R   S S SRSRS S     R +SKS+S SPR++R  S
Sbjct: 245 RSRSKSRSRSKRSGSKSRSRSKS---RGRSKSKSKSRSPRKSRSKS 278

[Close]

BLAST of Csa5G138510 vs. TrEMBL
Match: A0A0P5QR27_9CRUS (Putative Serine/arginine-rich splicing factor OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.7e-06
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1


Query: 195 ARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAER---RSVSRSV 254
           +R   + K    SP +SRS+SRSR +S  RS+S+S S + R++RSKS  R       RSV
Sbjct: 258 SRGRSKSKSKSRSPRKSRSKSRSRDKSVDRSKSKSLSHSPRKSRSKSRSRDKSMERDRSV 317

Query: 255 SRSRSPSPIKSSRPRSKSRSGSPRQAREGS 282
           SR +S     S + RSKSR  S  ++R  S
Sbjct: 318 SRDKSVDRAGSKQSRSKSRERSHSRSRSRS 347

HSP 2 Score: 41.6 bits (96), Expect = 1.9e+00
Identity = 63/246 (25.61%), Postives = 91/246 (36.99%), Query Frame = 1


Query: 3   SRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAI 62
           +R    + V NL S +   +++D   + G +   +     R      VEF S  D + AI
Sbjct: 128 TRTDYRLVVENLSSRVSWQDLKDYMRQAGEVTYADAHKQHRNEGV--VEFASYSDLKTAI 187

Query: 63  RARDGYNFDGCRLR-VELAHGGRGPSSSDRRSSYGGGGGGGGGGG----GGGGGGGGGGG 122
              DG + +G R++ VE    GR  S    RS                            
Sbjct: 188 EKLDGTDLNGRRIKLVEDKDSGRRGSRRRSRSRSSSRSRSRSRSRRRSRSRSRSKSRSRS 247

Query: 123 GRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDD 182
            R G   RS  +   R    S S    K   +          SRD       VD +    
Sbjct: 248 KRSGSKSRSRSKSRGRSKSKSKSRSPRKSRSKSR--------SRDKS-----VDRSKSKS 307

Query: 183 MKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRN 242
           + ++ RK          +    R    D S  R+ S+ +SRS+SR RS SRSRSR+  R+
Sbjct: 308 LSHSPRKSRSKSRSRDKSMERDRSVSRDKSVDRAGSK-QSRSKSRERSHSRSRSRSVSRS 357

Query: 243 RSKSAE 244
           RS + E
Sbjct: 368 RSINTE 357

HSP 3 Score: 187.2 bits (474), Expect = 2.8e-44
Identity = 123/286 (43.01%), Postives = 160/286 (55.94%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           +Y+G LP  +KE +IE  F  YG++ ++ +K       Y FVEFE  RDA+DA+   +G 
Sbjct: 5   VYIGGLPYRVKERDIERFFRGYGKLREVLIKNG-----YGFVEFEDYRDADDAVYELNGK 64

Query: 69  NFDGCRLRVELAHG-----GRGPS--SSDRRSSYGGGGGGGGG------GGGGGGGGGGG 128
              G R+ VE A G     GRG S  S   RS   G   G  G         GG GGG  
Sbjct: 65  ELCGERVTVERAKGSPRARGRGSSGGSDSGRSPRNGRDHGRSGFRNSSNSRSGGKGGGDN 124

Query: 129 GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNY 188
              R+G   R++YR++V  L S  SWQDLKD+MR+AG+V +A+  +      G+V++ +Y
Sbjct: 125 APPRYGPPTRTDYRLVVENLSSRVSWQDLKDYMRQAGEVTYADAHKQHRNE-GVVEFASY 184

Query: 189 DDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTAR 248
            D+K AI KLD T+      R    V+  D     SR RSRSRS SRSRSRSRSR R+  
Sbjct: 185 SDLKTAIEKLDGTDLN---GRRIKLVEDKDSGRRGSRRRSRSRSSSRSRSRSRSRRRSRS 244

Query: 249 RNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGS 282
           R+RSKS  R   S S SRSRS S     R +SKS+S SPR++R  S
Sbjct: 245 RSRSKSRSRSKRSGSKSRSRSKS---RGRSKSKSKSRSPRKSRSKS 278

[Close]

BLAST of Csa5G138510 vs. TrEMBL
Match: A0A0P5FPD2_9CRUS (Putative Serine/arginine-rich splicing factor (Fragment) OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.7e-06
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1


Query: 195 ARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAER---RSVSRSV 254
           +R   + K    SP +SRS+SRSR +S  RS+S+S S + R++RSKS  R       RSV
Sbjct: 258 SRGRSKSKSKSRSPRKSRSKSRSRDKSVDRSKSKSLSHSPRKSRSKSRSRDKSMERDRSV 317

Query: 255 SRSRSPSPIKSSRPRSKSRSGSPRQAREGS 282
           SR +S     S + RSKSR  S  ++R  S
Sbjct: 318 SRDKSVDRAGSKQSRSKSRERSHSRSRSRS 347

HSP 2 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 202 KKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIK 261
           K    SP +SRS+SRSR +S  R RS SR ++  R  SK +  +S  RS SRSRS     
Sbjct: 291 KSLSHSPRKSRSKSRSRDKSMERDRSVSRDKSVDRAGSKQSRSKSRERSHSRSRS----- 350

Query: 262 SSRPRSKSRSGSPRQ 277
            S  RS+S SGSPR+
Sbjct: 351 RSVSRSRSASGSPRR 360

HSP 3 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 191 RNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAER--RSVS 250
           R   +++  R K  D S ++S S S  +SRS+SRSR +S  R    +R KS +R     S
Sbjct: 272 RKSRSKSRSRDKSVDRSKSKSLSHSPRKSRSKSRSRDKSMERDRSVSRDKSVDRAGSKQS 331

Query: 251 RSVSRSRSPSPIKS-SRPRSKSRSGSPRQ 277
           RS SR RS S  +S S  RS+S SGSPR+
Sbjct: 332 RSKSRERSHSRSRSRSVSRSRSASGSPRR 360

HSP 4 Score: 43.1 bits (100), Expect = 6.5e-01
Identity = 65/252 (25.79%), Postives = 92/252 (36.51%), Query Frame = 1


Query: 3   SRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAI 62
           +R    + V NL S +   +++D   + G +   +     R      VEF S  D + AI
Sbjct: 128 TRTDYRLVVENLSSRVSWQDLKDYMRQAGEVTYADAHKQHRNEGV--VEFASYSDLKTAI 187

Query: 63  RARDGYNFDGCRLR-VELAHGGRGPSSSDRRSSYGGGGGGGGGGG----GGGGGGGGGGG 122
              DG + +G R++ VE    GR  S    RS                            
Sbjct: 188 EKLDGTDLNGRRIKLVEDKDSGRRGSRRRSRSRSSSRSRSRSRSRRRSRSRSRSKSRSRS 247

Query: 123 GRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDD 182
            R G   RS  +   R    S S    K   +          SRD       VD +    
Sbjct: 248 KRSGSKSRSRSKSRGRSKSKSKSRSPRKSRSKSR--------SRDKS-----VDRSKSKS 307

Query: 183 MKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRN 242
           + ++ RK          +    R    D S  R+ S+ +SRS+SR RS SRSRSR+  R+
Sbjct: 308 LSHSPRKSRSKSRSRDKSMERDRSVSRDKSVDRAGSK-QSRSKSRERSHSRSRSRSVSRS 363

Query: 243 RSKSAERRSVSR 250
           RS S   R   R
Sbjct: 368 RSASGSPRRDER 363

HSP 5 Score: 187.2 bits (474), Expect = 2.8e-44
Identity = 123/286 (43.01%), Postives = 160/286 (55.94%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           +Y+G LP  +KE +IE  F  YG++ ++ +K       Y FVEFE  RDA+DA+   +G 
Sbjct: 5   VYIGGLPYRVKERDIERFFRGYGKLREVLIKNG-----YGFVEFEDYRDADDAVYELNGK 64

Query: 69  NFDGCRLRVELAHG-----GRGPS--SSDRRSSYGGGGGGGGG------GGGGGGGGGGG 128
              G R+ VE A G     GRG S  S   RS   G   G  G         GG GGG  
Sbjct: 65  ELCGERVTVERAKGSPRARGRGSSGGSDSGRSPRNGRDHGRSGFRNSSNSRSGGKGGGDN 124

Query: 129 GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNY 188
              R+G   R++YR++V  L S  SWQDLKD+MR+AG+V +A+  +      G+V++ +Y
Sbjct: 125 APPRYGPPTRTDYRLVVENLSSRVSWQDLKDYMRQAGEVTYADAHKQHRNE-GVVEFASY 184

Query: 189 DDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTAR 248
            D+K AI KLD T+      R    V+  D     SR RSRSRS SRSRSRSRSR R+  
Sbjct: 185 SDLKTAIEKLDGTDLN---GRRIKLVEDKDSGRRGSRRRSRSRSSSRSRSRSRSRRRSRS 244

Query: 249 RNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGS 282
           R+RSKS  R   S S SRSRS S     R +SKS+S SPR++R  S
Sbjct: 245 RSRSKSRSRSKRSGSKSRSRSKS---RGRSKSKSKSRSPRKSRSKS 278

[Close]

BLAST of Csa5G138510 vs. TrEMBL
Match: A0A0P5VVJ2_9CRUS (Putative Serine/arginine-rich splicing factor OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.7e-06
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1


Query: 195 ARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAER---RSVSRSV 254
           +R   + K    SP +SRS+SRSR +S  RS+S+S S + R++RSKS  R       RSV
Sbjct: 258 SRGRSKSKSKSRSPRKSRSKSRSRDKSVDRSKSKSLSHSPRKSRSKSRSRDKSMERDRSV 317

Query: 255 SRSRSPSPIKSSRPRSKSRSGSPRQAREGS 282
           SR +S     S + RSKSR  S  ++R  S
Sbjct: 318 SRDKSVDRAGSKQSRSKSRERSHSRSRSRS 347

HSP 2 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 202 KKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIK 261
           K    SP +SRS+SRSR +S  R RS SR ++  R  SK +  +S  RS SRSRS     
Sbjct: 291 KSLSHSPRKSRSKSRSRDKSMERDRSVSRDKSVDRAGSKQSRSKSRERSHSRSRS----- 350

Query: 262 SSRPRSKSRSGSPRQ 277
            S  RS+S SGSPR+
Sbjct: 351 RSVSRSRSASGSPRR 360

HSP 3 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 191 RNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAER--RSVS 250
           R   +++  R K  D S ++S S S  +SRS+SRSR +S  R    +R KS +R     S
Sbjct: 272 RKSRSKSRSRDKSVDRSKSKSLSHSPRKSRSKSRSRDKSMERDRSVSRDKSVDRAGSKQS 331

Query: 251 RSVSRSRSPSPIKS-SRPRSKSRSGSPRQ 277
           RS SR RS S  +S S  RS+S SGSPR+
Sbjct: 332 RSKSRERSHSRSRSRSVSRSRSASGSPRR 360

HSP 4 Score: 43.1 bits (100), Expect = 6.5e-01
Identity = 65/252 (25.79%), Postives = 92/252 (36.51%), Query Frame = 1


Query: 3   SRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAI 62
           +R    + V NL S +   +++D   + G +   +     R      VEF S  D + AI
Sbjct: 128 TRTDYRLVVENLSSRVSWQDLKDYMRQAGEVTYADAHKQHRNEGV--VEFASYSDLKTAI 187

Query: 63  RARDGYNFDGCRLR-VELAHGGRGPSSSDRRSSYGGGGGGGGGGG----GGGGGGGGGGG 122
              DG + +G R++ VE    GR  S    RS                            
Sbjct: 188 EKLDGTDLNGRRIKLVEDKDSGRRGSRRRSRSRSSSRSRSRSRSRRRSRSRSRSKSRSRS 247

Query: 123 GRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDD 182
            R G   RS  +   R    S S    K   +          SRD       VD +    
Sbjct: 248 KRSGSKSRSRSKSRGRSKSKSKSRSPRKSRSKSR--------SRDKS-----VDRSKSKS 307

Query: 183 MKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRN 242
           + ++ RK          +    R    D S  R+ S+ +SRS+SR RS SRSRSR+  R+
Sbjct: 308 LSHSPRKSRSKSRSRDKSMERDRSVSRDKSVDRAGSK-QSRSKSRERSHSRSRSRSVSRS 363

Query: 243 RSKSAERRSVSR 250
           RS S   R   R
Sbjct: 368 RSASGSPRRDER 363

HSP 5 Score: 27.7 bits (60), Expect = 2.8e+04
Identity = 17/38 (44.74%), Postives = 20/38 (52.63%), Query Frame = 1


Query: 209 TRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRS 247
           + SRSRSRS SRSRS S S  R       +  +  R S
Sbjct: 339 SHSRSRSRSVSRSRSASGSPRRDERDDDEKMDNGHRSS 376

HSP 6 Score: 187.2 bits (474), Expect = 2.8e-44
Identity = 123/286 (43.01%), Postives = 160/286 (55.94%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           +Y+G LP  +KE +IE  F  YG++ ++ +K       Y FVEFE  RDA+DA+   +G 
Sbjct: 28  VYIGGLPYRVKERDIERFFRGYGKLREVLIKNG-----YGFVEFEDYRDADDAVYELNGK 87

Query: 69  NFDGCRLRVELAHG-----GRGPS--SSDRRSSYGGGGGGGGG------GGGGGGGGGGG 128
              G R+ VE A G     GRG S  S   RS   G   G  G         GG GGG  
Sbjct: 88  ELCGERVTVERAKGSPRARGRGSSGGSDSGRSPRNGRDHGRSGFRNSSNSRSGGKGGGDN 147

Query: 129 GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNY 188
              R+G   R++YR++V  L S  SWQDLKD+MR+AG+V +A+  +      G+V++ +Y
Sbjct: 148 APPRYGPPTRTDYRLVVENLSSRVSWQDLKDYMRQAGEVTYADAHKQHRNE-GVVEFASY 207

Query: 189 DDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTAR 248
            D+K AI KLD T+      R    V+  D     SR RSRSRS SRSRSRSRSR R+  
Sbjct: 208 SDLKTAIEKLDGTDLN---GRRIKLVEDKDSGRRGSRRRSRSRSSSRSRSRSRSRRRSRS 267

Query: 249 RNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGS 282
           R+RSKS  R   S S SRSRS S     R +SKS+S SPR++R  S
Sbjct: 268 RSRSKSRSRSKRSGSKSRSRSKS---RGRSKSKSKSRSPRKSRSKS 301

[Close]

BLAST of Csa5G138510 vs. TrEMBL
Match: A0A0P4YG17_9CRUS (Putative Serine/arginine-rich splicing factor OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.7e-06
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1


Query: 195 ARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAER---RSVSRSV 254
           +R   + K    SP +SRS+SRSR +S  RS+S+S S + R++RSKS  R       RSV
Sbjct: 281 SRGRSKSKSKSRSPRKSRSKSRSRDKSVDRSKSKSLSHSPRKSRSKSRSRDKSMERDRSV 340

Query: 255 SRSRSPSPIKSSRPRSKSRSGSPRQAREGS 282
           SR +S     S + RSKSR  S  ++R  S
Sbjct: 341 SRDKSVDRAGSKQSRSKSRERSHSRSRSRS 370

HSP 2 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 202 KKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIK 261
           K    SP +SRS+SRSR +S  R RS SR ++  R  SK +  +S  RS SRSRS     
Sbjct: 314 KSLSHSPRKSRSKSRSRDKSMERDRSVSRDKSVDRAGSKQSRSKSRERSHSRSRS----- 373

Query: 262 SSRPRSKSRSGSPRQ 277
            S  RS+S SGSPR+
Sbjct: 374 RSVSRSRSASGSPRR 383

HSP 3 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 191 RNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAER--RSVS 250
           R   +++  R K  D S ++S S S  +SRS+SRSR +S  R    +R KS +R     S
Sbjct: 295 RKSRSKSRSRDKSVDRSKSKSLSHSPRKSRSKSRSRDKSMERDRSVSRDKSVDRAGSKQS 354

Query: 251 RSVSRSRSPSPIKS-SRPRSKSRSGSPRQ 277
           RS SR RS S  +S S  RS+S SGSPR+
Sbjct: 355 RSKSRERSHSRSRSRSVSRSRSASGSPRR 383

HSP 4 Score: 43.1 bits (100), Expect = 6.5e-01
Identity = 65/252 (25.79%), Postives = 92/252 (36.51%), Query Frame = 1


Query: 3   SRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAI 62
           +R    + V NL S +   +++D   + G +   +     R      VEF S  D + AI
Sbjct: 151 TRTDYRLVVENLSSRVSWQDLKDYMRQAGEVTYADAHKQHRNEGV--VEFASYSDLKTAI 210

Query: 63  RARDGYNFDGCRLR-VELAHGGRGPSSSDRRSSYGGGGGGGGGGG----GGGGGGGGGGG 122
              DG + +G R++ VE    GR  S    RS                            
Sbjct: 211 EKLDGTDLNGRRIKLVEDKDSGRRGSRRRSRSRSSSRSRSRSRSRRRSRSRSRSKSRSRS 270

Query: 123 GRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDD 182
            R G   RS  +   R    S S    K   +          SRD       VD +    
Sbjct: 271 KRSGSKSRSRSKSRGRSKSKSKSRSPRKSRSKSR--------SRDKS-----VDRSKSKS 330

Query: 183 MKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRN 242
           + ++ RK          +    R    D S  R+ S+ +SRS+SR RS SRSRSR+  R+
Sbjct: 331 LSHSPRKSRSKSRSRDKSMERDRSVSRDKSVDRAGSK-QSRSKSRERSHSRSRSRSVSRS 386

Query: 243 RSKSAERRSVSR 250
           RS S   R   R
Sbjct: 391 RSASGSPRRDER 386

HSP 5 Score: 27.7 bits (60), Expect = 2.8e+04
Identity = 17/38 (44.74%), Postives = 20/38 (52.63%), Query Frame = 1


Query: 209 TRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRS 247
           + SRSRSRS SRSRS S S  R       +  +  R S
Sbjct: 362 SHSRSRSRSVSRSRSASGSPRRDERDDDEKMDNGHRSS 399

HSP 6 Score: 187.2 bits (474), Expect = 2.8e-44
Identity = 123/286 (43.01%), Postives = 160/286 (55.94%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           +Y+G LP  +KE +IE  F  YG++ ++ +K       Y FVEFE  RDA+DA+   +G 
Sbjct: 5   VYIGGLPYRVKERDIERFFRGYGKLREVLIKNG-----YGFVEFEDFRDADDAVYELNGK 64

Query: 69  NFDGCRLRVELAHG-----GRGPS--SSDRRSSYGGGGGGGGG------GGGGGGGGGGG 128
              G R+ VE A G     GRG S  S   RS   G   G  G         GG GGG  
Sbjct: 65  ELCGERVTVERAKGSPRARGRGSSGGSDSGRSPRNGRDHGRSGFRNSSNSRSGGKGGGDN 124

Query: 129 GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNY 188
              R+G   R++YR++V  L S  SWQDLKD+MR+AG+V +A+  +      G+V++ +Y
Sbjct: 125 APPRYGPPTRTDYRLVVENLSSRVSWQDLKDYMRQAGEVTYADAHKQHRNE-GVVEFASY 184

Query: 189 DDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTAR 248
            D+K AI KLD T+      R    V+  D     SR RSRSRS SRSRSRSRSR R+  
Sbjct: 185 SDLKTAIEKLDGTDLN---GRRIKLVEDKDSGRRGSRRRSRSRSSSRSRSRSRSRRRSRS 244

Query: 249 RNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGS 282
           R+RSKS  R   S S SRSRS S     R +SKS+S SPR++R  S
Sbjct: 245 RSRSKSRSRSKRSGSKSRSRSKS---RGRSKSKSKSRSPRKSRSKS 278

[Close]

BLAST of Csa5G138510 vs. TAIR10
Match: AT3G49430.1 (AT3G49430.1 SER/ARG-rich protein 34A)

HSP 1 Score: 434.1 bits (1115), Expect = 6.6e-122
Identity = 221/305 (72.46%), Postives = 243/305 (79.67%), Query Frame = 1


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR      GG GGGG G GGGGGGGG  RF
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR------GGYGGGGSGYGGGGGGGGSARF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKY
Sbjct: 121 GVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSK 240
           AIRKLDDTEFRNPWAR +IRVKKY+ S +RSRS SRSRSRSRSRSRSR R R+  R+RS 
Sbjct: 181 AIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSL 240

Query: 241 S-----------AERRSVSRSVSRSRSPSPIKS-------------SRPRSKSRSGSPRQ 282
           S           + RRS+SRS+S+SRSPSP K              SR RS+S S SP +
Sbjct: 241 SRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSPPK 299

[Close]

BLAST of Csa5G138510 vs. TAIR10
Match: AT1G02840.1 (AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 341.3 bits (874), Expect = 5.8e-94
Identity = 180/286 (62.94%), Postives = 214/286 (74.83%), Query Frame = 1


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG GGG G G GG          
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSR-------- 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           G S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT Y+DMKY
Sbjct: 121 GPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRSRSRSRSRTAR 240
           A++KLDDTEFRN ++  Y+RV++YD      SP+R RS S+SRSRSR RS SRSRSR+  
Sbjct: 181 ALKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRS-- 240

Query: 241 RNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGS 282
           R+RS+S + +S  RS ++S S SP     PRSKSRS SPR++R  S
Sbjct: 241 RSRSRSPKAKSSRRSPAKSTSRSP----GPRSKSRSPSPRRSRSRS 271

HSP 2 Score: 159.8 bits (403), Expect = 2.4e-39
Identity = 115/305 (37.70%), Postives = 148/305 (48.52%), Query Frame = 1


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGG------------------ 120
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG GG                  
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGRR-SSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 --------GGGGGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDV 180
                                 GG    S+         G+     ++D+K  ++K  D 
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 CFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRN-PWARAYIRVKKYDGSPTRS-- 240
            F      S G   + +Y +  D +   R    ++ R+    R+  R +    S +RS  
Sbjct: 181 EFRNAF--SNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPK 240

Query: 241 ------------------RSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSR 259
                             RS+SRS S  RSRSRSRS   + ++  SKS  + S ++S   
Sbjct: 241 AKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSPIH 300

[Close]

BLAST of Csa5G138510 vs. TAIR10
Match: AT4G39260.1 (AT4G39260.1 cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-11
Identity = 50/142 (35.21%), Postives = 66/142 (46.48%), Query Frame = 1


Query: 10  YVGNLPSDIKEYEIEDLFYKYGRILDIEL---KIPPRPPCYCFVEFESVRDAEDAIRARD 69
           +VG L     + +++  F ++G ++D ++   +   R   + FV F+  +   DAI   +
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 70  GYNFDGCRLRVELAH--------GGRGPSSSDRRSSYGGGGGGGGGGG--GGGGGG---- 128
           G   DG  + V  A         GGRG S    RS  GGG  GGGGGG  GGGGGG    
Sbjct: 69  GKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGGGGGYERR 128

HSP 2 Score: 51.6 bits (122), Expect = 9.2e-07
Identity = 46/160 (28.75%), Postives = 61/160 (38.12%), Query Frame = 1


Query: 10  YVGNLPSDIKEYEIEDLFYKYGRILDIEL---KIPPRPPCYCFVEFESVRDAEDAIRARD 69
           +VG L     + +++  F ++G ++D ++   +   R   + FV F+  +   DAI   +
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 70  GYNFDGCRLRVELAH--------GGRGPSSSDRRS------------SYGGGGGGG---- 119
           G   DG  + V  A         GGRG S    RS             Y GGGGGG    
Sbjct: 69  GKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGGGGGYERR 128

[Close]

BLAST of Csa5G138510 vs. TAIR10
Match: AT4G36230.1 (AT4G36230.1 unknown protein)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-10
Identity = 29/40 (72.50%), Postives = 27/40 (67.50%), Query Frame = 1


Query: 82  GGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRFG 122
           GG G  S   R   GGGGGGGGGGGGGGGGGGGGGGG  G
Sbjct: 142 GGSGNGSGRGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 181

HSP 2 Score: 61.6 bits (148), Expect = 8.9e-10
Identity = 28/40 (70.00%), Postives = 26/40 (65.00%), Query Frame = 1


Query: 82  GGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRFG 122
           GG G   S   S  G GGGGGGGGGGGGGGGGGGGGG  G
Sbjct: 137 GGGGGGGSGNGSGRGRGGGGGGGGGGGGGGGGGGGGGGGG 176

HSP 3 Score: 58.9 bits (141), Expect = 5.8e-09
Identity = 28/50 (56.00%), Postives = 30/50 (60.00%), Query Frame = 1


Query: 81  HGGRGPSSSDRRSSYGGGGGGGGGGGGGG---------GGGGGGGGGRFG 122
           +GG G  +S +R+   GGGGGGGGGGGGG         GGGGGGGGG  G
Sbjct: 115 NGGNGKDNSHKRNKSSGGGGGGGGGGGGGSGNGSGRGRGGGGGGGGGGGG 164

HSP 4 Score: 57.4 bits (137), Expect = 1.7e-08
Identity = 25/39 (64.10%), Postives = 24/39 (61.54%), Query Frame = 1


Query: 83  GRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRFG 122
           GRG          GGGGGGGGGGGGGGGGGGGG  G+ G
Sbjct: 149 GRGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGSDGKGG 187

HSP 5 Score: 56.6 bits (135), Expect = 2.9e-08
Identity = 31/57 (54.39%), Postives = 32/57 (56.14%), Query Frame = 1


Query: 81  HGGRGPSSSDRR--SSYGGGGGGG--------------GGGGGGGGGGGGGGGGRFG 122
           +GG G  +S +R  SS GGGGGGG              GGGGGGGGGGGGGGGG  G
Sbjct: 115 NGGNGKDNSHKRNKSSGGGGGGGGGGGGGSGNGSGRGRGGGGGGGGGGGGGGGGGGG 171

HSP 6 Score: 53.1 bits (126), Expect = 3.2e-07
Identity = 23/29 (79.31%), Postives = 21/29 (72.41%), Query Frame = 1


Query: 93  SSYGGGGGGGGGGGGGGGGGGGGGGGRFG 122
           S  GGGGGGGGGGGGGGGG G GGGG  G
Sbjct: 86  SRAGGGGGGGGGGGGGGGGQGSGGGGGEG 114

HSP 7 Score: 52.8 bits (125), Expect = 4.1e-07
Identity = 24/40 (60.00%), Postives = 22/40 (55.00%), Query Frame = 1


Query: 82  GGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRFG 122
           GG G          GGGGGGGGGGGGGGG  G GGG  FG
Sbjct: 153 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGSDGKGGGWGFG 192

HSP 8 Score: 52.8 bits (125), Expect = 4.1e-07
Identity = 23/39 (58.97%), Postives = 24/39 (61.54%), Query Frame = 1


Query: 91  RRSSYGGGGGGGGGGGGGGGGGGGGGGGRFGVSKRSEYR 130
           R    GGGGGGGGGGGGG G GGGGG G  G  K + ++
Sbjct: 87  RAGGGGGGGGGGGGGGGGQGSGGGGGEGNGGNGKDNSHK 125

HSP 9 Score: 52.0 bits (123), Expect = 7.0e-07
Identity = 21/32 (65.62%), Postives = 23/32 (71.88%), Query Frame = 1


Query: 87  SSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGG 119
           + +++  S  GGGGGGGGGGGGGGGG G GGG
Sbjct: 79  NKTEKCESRAGGGGGGGGGGGGGGGGQGSGGG 110

HSP 10 Score: 50.4 bits (119), Expect = 2.0e-06
Identity = 30/78 (38.46%), Postives = 36/78 (46.15%), Query Frame = 1


Query: 50  VEFESVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGG 109
           VEFE+  D ++  +       + C  R     GG G          GGGGGGGG G GGG
Sbjct: 67  VEFENALDDQNVNKT------EKCESRAGGGGGGGG----------GGGGGGGGQGSGGG 126

Query: 110 GGGGGGGGGRFGVSKRSE 128
           GG G GG G+    KR++
Sbjct: 127 GGEGNGGNGKDNSHKRNK 128

HSP 11 Score: 46.6 bits (109), Expect = 3.0e-05
Identity = 30/87 (34.48%), Postives = 33/87 (37.93%), Query Frame = 1


Query: 50  VEFESVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGG-------- 109
           VEFE+  D ++  +       + C  R     GG G           GGGGG        
Sbjct: 67  VEFENALDDQNVNKT------EKCESRAGGGGGGGGGGGGGGGGQGSGGGGGEGNGGNGK 126

Query: 110 ----------GGGGGGGGGGGGGGGGG 119
                     GGGGGGGGGGGGG G G
Sbjct: 127 DNSHKRNKSSGGGGGGGGGGGGGSGNG 147

HSP 12 Score: 40.0 bits (92), Expect = 2.8e-03
Identity = 22/44 (50.00%), Postives = 20/44 (45.45%), Query Frame = 1


Query: 82  GGRGPSSSDRRSSYGGGGGG----GGGGGGGGGGGGGGGGGRFG 122
           GG G          GGGGGG    GGG G G G GG G GG FG
Sbjct: 162 GGGGGGGGGGGGGGGGGGGGSDGKGGGWGFGFGWGGDGPGGNFG 205

HSP 13 Score: 32.7 bits (73), Expect = 4.4e-01
Identity = 22/48 (45.83%), Postives = 22/48 (45.83%), Query Frame = 1


Query: 82  GGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF---GVSKRS 127
           GG G   SD      G GGG G G G GG G GG  GR    G +K+S
Sbjct: 175 GGGGGGGSD------GKGGGWGFGFGWGGDGPGGNFGRCWYPGCTKKS 216

[Close]

BLAST of Csa5G138510 vs. TAIR10
Match: AT1G75550.1 (AT1G75550.1 glycine-rich protein)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-09
Identity = 25/31 (80.65%), Postives = 24/31 (77.42%), Query Frame = 1


Query: 88  SSDRRSSYGGGGGGGGGGGGGGGGGGGGGGG 119
           S   R  +GGGGGGGGGGGGGGGGGGGGGGG
Sbjct: 62  SGSYRWGWGGGGGGGGGGGGGGGGGGGGGGG 92

HSP 2 Score: 58.5 bits (140), Expect = 7.5e-09
Identity = 27/37 (72.97%), Postives = 26/37 (70.27%), Query Frame = 1


Query: 85  GPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRFG 122
           G S S R    GGGGGGGGGGGGGGGGGGGGGG  +G
Sbjct: 60  GGSGSYRWGWGGGGGGGGGGGGGGGGGGGGGGGWGWG 96

HSP 3 Score: 53.5 bits (127), Expect = 2.4e-07
Identity = 27/44 (61.36%), Postives = 26/44 (59.09%), Query Frame = 1


Query: 81  HGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGG---GGGGRFG 122
           +GG G          GGGGGGGGGGGGGGGGGGG   GGGG  G
Sbjct: 59  NGGSGSYRWGWGGGGGGGGGGGGGGGGGGGGGGGWGWGGGGGGG 102

HSP 4 Score: 48.5 bits (114), Expect = 7.8e-06
Identity = 26/58 (44.83%), Postives = 26/58 (44.83%), Query Frame = 1


Query: 82  GGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGG------GGGRFGVSKRSEYRVIVR 134
           GG G          GGGGGGGGG G GGGGGGGG      GGG  G  +      + R
Sbjct: 70  GGGGGGGGGGGGGGGGGGGGGGGWGWGGGGGGGGWYKWGCGGGGKGKGREGRGEFVKR 127

HSP 5 Score: 46.2 bits (108), Expect = 3.9e-05
Identity = 20/32 (62.50%), Postives = 20/32 (62.50%), Query Frame = 1


Query: 90  DRRSSYGGGGGGGGGGGGGGGGGGGGGGGRFG 122
           D++ SY GG G    G GGGGGGGGGGGG  G
Sbjct: 53  DKKRSYNGGSGSYRWGWGGGGGGGGGGGGGGG 84

[Close]

BLAST of Csa5G138510 vs. NCBI nr
Match: gi|1004137305|gb|KXZ45332.1| (hypothetical protein GPECTOR_56g429 [Gonium pectorale])

HSP 1 Score: 297.4 bits (760), Expect = 2.7e-77
Identity = 173/329 (52.58%), Postives = 213/329 (64.74%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           ++VGNLP D++E E+EDLF+KYGRI +++LKI PRPP + FVEFE  RDA DA+R RDG 
Sbjct: 6   VFVGNLPMDVREREVEDLFFKYGRIRNVDLKIGPRPPAFAFVEFEDPRDAYDAVRGRDGI 65

Query: 69  NFDGCRLRVELAHG----------GRGPSSSDRRSSYGGGGGG-------------GGGG 128
            F G RLRVE++HG          G G         YGGGGGG             GG G
Sbjct: 66  EFQGQRLRVEVSHGRRGGFGGGGGGGGGGGGGFGGGYGGGGGGDRYGGGGDRYGGGGGYG 125

Query: 129 GGGGGGGGGGGGGR-----------FGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDV 188
           GGGG GGGGGGGG            FG S+R+++RVIV GLP S SWQDLKDHMR+AG+V
Sbjct: 126 GGGGYGGGGGGGGASASGRSLGPNPFGPSRRTDFRVIVTGLPVSCSWQDLKDHMRRAGEV 185

Query: 189 CFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKK-YDG------- 248
            F++V RD  G  G++DY + +DM+ A+RKLD +EFRNP+    IRVK+  DG       
Sbjct: 186 TFSQVMRDGRGMLGLIDYASREDMEGALRKLDGSEFRNPYDSTRIRVKEDRDGTGGGGGG 245

Query: 249 --------SPTRSRSRSRSRSRSRSRSRSRSRS-------RTARRNRSKSAERRSVSRSV 280
                   S +RSRSRS+S+SRSRSRSRSRSRS       ++  R+RS+SAERRS SRS 
Sbjct: 246 GSKRRSSRSKSRSRSRSKSKSRSRSRSRSRSRSKSRSRGGKSKSRSRSRSAERRSKSRSK 305

[Close]

BLAST of Csa5G138510 vs. NCBI nr
Match: gi|159463554|ref|XP_001690007.1| (SR protein factor [Chlamydomonas reinhardtii])

HSP 1 Score: 292.0 bits (746), Expect = 1.1e-75
Identity = 164/327 (50.15%), Postives = 206/327 (63.00%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           ++VGNLP D++E E+EDLF+KYGRI  ++LKI PRPP + FVEFE  RDA DA+R RDG 
Sbjct: 6   VFVGNLPMDVREREVEDLFFKYGRIRSVDLKIGPRPPAFAFVEFEDERDAADAVRGRDGI 65

Query: 69  NFDGCRLRVELAHGGRGPSSSDRRS-------------------SYGGGGGGGGGGGGGG 128
            F G RLRVE++HG RG +                          YGGGGGGG GGGGGG
Sbjct: 66  EFQGQRLRVEVSHGRRGGAGGGGGGFGGGGGGFGGGGGGYGGGGGYGGGGGGGYGGGGGG 125

Query: 129 -------------------GGGGGGGGGR------FGVSKRSEYRVIVRGLPSSASWQDL 188
                              GG GGGGGGR      FG S+R+++RVIV  LP S SWQDL
Sbjct: 126 YGGGGGGYGGGGGGYGGGGGGSGGGGGGRSLGPNPFGPSRRTDFRVIVTNLPLSCSWQDL 185

Query: 189 KDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKK- 248
           KDHMR+AG+V F++V RD  G  G++DY    D++ A+RKLDD+EF+NP+  A IRV++ 
Sbjct: 186 KDHMRRAGEVTFSQVMRDGRGMLGLIDYATRSDLELALRKLDDSEFKNPYDTARIRVRED 245

Query: 249 --------YDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSR 282
                     G     RSRSRS+SRS+SRSRSRS+SR+  R+RS+S ++   SRS SRS+
Sbjct: 246 RGDGPAGVSGGGSRGRRSRSRSKSRSKSRSRSRSKSRSKSRSRSRSHDK---SRSRSRSK 305

[Close]

BLAST of Csa5G138510 vs. NCBI nr
Match: gi|159463554|ref|XP_001690007.1| (SR protein factor [Chlamydomonas reinhardtii])

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 44/88 (50.00%), Postives = 55/88 (62.50%), Query Frame = 1


Query: 195 ARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRS 254
           +R            ++SRSRSRS+SRS+SRSRSRS  ++  R+RSKS   RS SRS SRS
Sbjct: 269 SR------------SKSRSRSRSKSRSKSRSRSRSHDKSRSRSRSKS-PARSKSRSRSRS 328

Query: 255 RSPSPIKSSRPRSKSRSGSPRQAREGSE 283
           RS      SR RS +RSGSP +  E +E
Sbjct: 329 RS-----RSRSRSPARSGSPAREEEKAE 338

HSP 2 Score: 204.5 bits (519), Expect = 2.4e-49
Identity = 129/305 (42.30%), Postives = 174/305 (57.05%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           +++G L    +E ++E  F  YGRI +I LK       + FVEF+  RDA+DA+   +G 
Sbjct: 6   VFIGRLSPHARERDVEKFFKGYGRIREINLKNG-----FGFVEFDDHRDADDAVYELNGK 65

Query: 69  NFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGG--GGGGGGGRFGVSKRS 128
                R+ +E A   RG       S +GGGGGGGGGGGGGGGG       G R+G   R+
Sbjct: 66  ELCNERVTIEHARSRRGRGGGPGMSRFGGGGGGGGGGGGGGGGYRQSRSSGSRYGPPVRT 125

Query: 129 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLD 188
           ++R+IV  L S  SWQDLKD MRKAG+V F +  R ++   G+V++ +  DMK AI KLD
Sbjct: 126 DHRLIVENLSSRISWQDLKDLMRKAGEVTFVDAHRPTKNE-GVVEFASRSDMKNAISKLD 185

Query: 189 DTEF----------RNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRS------------- 248
            TE           R   +++  R + Y  S +RSRSR+RSRSRSRS             
Sbjct: 186 GTELNGRKLKIFEDRRSRSKSRSRSRSYSRSKSRSRSRNRSRSRSRSLSRTPEKKNSGGS 245

Query: 249 ----RSRSRSRSRTARRNRSKSAER---RSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQ 282
               RS SRS+SR+  R++S+S  R   RS SRS SRSRSP PI++ + RS+SRS S  +
Sbjct: 246 KTAARSPSRSKSRSKSRSKSRSKSRSKSRSKSRSKSRSRSPPPIENKQSRSRSRSRSRSR 304

[Close]

BLAST of Csa5G138510 vs. NCBI nr
Match: gi|657735195|ref|XP_008311424.1| (PREDICTED: serine/arginine-rich splicing factor 5 [Cynoglossus semilaevis])

HSP 1 Score: 57.4 bits (137), Expect = 4.7e-05
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 195 ARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRS 254
           AR+  R K    S ++SRS+SRS+SRS+SRS+SRSRS     N+   +  RS SRS SRS
Sbjct: 243 ARSPSRSKSRSKSRSKSRSKSRSKSRSKSRSKSRSRSPPPIENKQSRSRSRSRSRSRSRS 302

Query: 255 RSPSPIKSSR 265
           RS S    S+
Sbjct: 303 RSRSASVDSK 312

HSP 2 Score: 201.4 bits (511), Expect = 2.0e-48
Identity = 132/301 (43.85%), Postives = 174/301 (57.81%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           +Y+G L    +E ++E  F  YG+IL+++LK       Y FVEF+  RDA+DA+   +G 
Sbjct: 4   VYIGRLSYRAREKDVERFFKGYGKILEVDLKNG-----YGFVEFDDPRDADDAVYDLNGK 63

Query: 69  NFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGG---------- 128
              G R+ VE   G R      R   YGGGGGGGGGGGGGGGGGGGGGGG          
Sbjct: 64  ELCGERVIVEHTKGPR------RDGGYGGGGGGGGGGGGGGGGGGGGGGGGGRSGYGRWG 123

Query: 129 --RFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYD 188
             R+G   R++YR+IV  L S  SWQDLKD+MR+AG+V +A+  +  +   G++++  Y 
Sbjct: 124 RDRYGPPIRTDYRLIVENLSSRCSWQDLKDYMRQAGEVTYADTHKGRKNE-GVIEFRLYA 183

Query: 189 DMKYAIRKLDDTEFRN---------PWARAYIRVKKYDGSPTRSRSRSRSR----SRSRS 248
           DMK A+ KLD TE            P AR   R + Y  S +RSRSRSRSR    SRSRS
Sbjct: 184 DMKRALEKLDGTEVNGRKIRLIEDRPGAR---RRRSYSRSRSRSRSRSRSRRSRKSRSRS 243

Query: 249 RSRSRSRSRTARRNRSKS--------AERRSVSRSVSRSRSPSPIKSSRPRSKS-RSGSP 276
            S SRSRSR++R    KS         ER + ++   +SRS SP KS  P+S+S +S SP
Sbjct: 244 ESSSRSRSRSSRSQSKKSKSKGKREEEERSNGAQKSKKSRSRSP-KSRSPKSRSPKSRSP 288

[Close]

BLAST of Csa5G138510 vs. NCBI nr
Match: gi|657804353|ref|XP_008329294.1| (PREDICTED: serine/arginine-rich splicing factor 6-like isoform X1 [Cynoglossus semilaevis])

HSP 1 Score: 184.5 bits (467), Expect = 2.6e-43
Identity = 134/348 (38.51%), Postives = 176/348 (50.57%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           +Y+G L    +E ++E  F  YG+IL+++LK       Y FVEF+  RDA+DA+   +G 
Sbjct: 4   VYIGRLSYRAREKDVERFFKGYGKILEVDLKNG-----YGFVEFDDPRDADDAVYDLNGK 63

Query: 69  NFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGG---------- 128
              G R+ VE   G R      R   YGGGGGGGGGGGGGGGGGGGGGGG          
Sbjct: 64  ELCGERVIVEHTKGPR------RDGGYGGGGGGGGGGGGGGGGGGGGGGGGGRSGYGRWG 123

Query: 129 --RFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYD 188
             R+G   R++YR+IV  L S  SWQDLKD+MR+AG+V +A+  +  +   G++++  Y 
Sbjct: 124 RDRYGPPIRTDYRLIVENLSSRCSWQDLKDYMRQAGEVTYADTHKGRKNE-GVIEFRLYA 183

Query: 189 DMKYAIRKLDDTEFRN---------PWARAYIRVKKYDGSPTRSRSRSRSR--------- 248
           DMK A+ KLD TE            P AR   R + Y  S +RSRSRSRSR         
Sbjct: 184 DMKRALEKLDGTEVNGRKIRLIEDRPGAR---RRRSYSRSRSRSRSRSRSRRSRKSRSRS 243

Query: 249 ---SRSRSRS---------------------------RSRSRSRTARRNRSKSAERRSVS 280
              SRSRSRS                           +SRSRS  +R  +S+S + RS  
Sbjct: 244 ESSSRSRSRSSRSQSKKSKSKGKREEEERSNGAQKSKKSRSRSPKSRSPKSRSPKSRS-- 303

HSP 2 Score: 57.4 bits (137), Expect = 4.7e-05
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 203 KYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKS 262
           K + S +RSRSRSRSRSRS  + RSR +S +  R++ KS +        SRSRS SPI+S
Sbjct: 305 KKETSMSRSRSRSRSRSRSGIKDRSR-KSDSKGRDQPKSEDEGGDPERGSRSRSRSPIES 364

Query: 263 -SRPRSKSRSGSPRQAREGS 282
            SR RSKS+S S  ++R  S
Sbjct: 365 KSRARSKSKSKSKSKSRSPS 383

HSP 3 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 1


Query: 163 SEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSR 222
           S    GI D +   D K   +   + E  +P   +  R +    SP  S+SR+RS+S+S+
Sbjct: 319 SRSRSGIKDRSRKSDSKGRDQPKSEDEGGDPERGSRSRSR----SPIESKSRARSKSKSK 378

Query: 223 SRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPS 259
           S+S+SRS S    R+RS+SA  RS SRS+SRSRS S
Sbjct: 379 SKSKSRSPSPAKARSRSRSAS-RSESRSMSRSRSRS 409

HSP 4 Score: 52.8 bits (125), Expect = 1.2e-03
Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = 1


Query: 191 RNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRS-------RSRTARRNRSKSAE 250
           R+P +R+    K         +  S SRSRSRSRSRSRS       +S +  R++ KS +
Sbjct: 285 RSPKSRSPKSKKSKKEGKKGKKETSMSRSRSRSRSRSRSGIKDRSRKSDSKGRDQPKSED 344

Query: 251 RRSVSRSVSRSRSPSPIKS-SRPRSKSRSGSPRQAREGS 282
                   SRSRS SPI+S SR RSKS+S S  ++R  S
Sbjct: 345 EGGDPERGSRSRSRSPIESKSRARSKSKSKSKSKSRSPS 383

HSP 5 Score: 52.4 bits (124), Expect = 1.5e-03
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1


Query: 206 GSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKS---AERRSVSRSVSRSRSPSPIKS 265
           G P R  SRSRSRS   S+SR+RS+S++  +++S+S   A+ RS SRS SRS S S    
Sbjct: 347 GDPERG-SRSRSRSPIESKSRARSKSKSKSKSKSRSPSPAKARSRSRSASRSESRS---M 406

Query: 266 SRPRSKSRS 272
           SR RS+SRS
Sbjct: 407 SRSRSRSRS 411

HSP 6 Score: 50.8 bits (120), Expect = 4.4e-03
Identity = 44/110 (40.00%), Postives = 54/110 (49.09%), Query Frame = 1


Query: 203 KYDGSPTRSRSRSRSRSRS------------------------------RSRSRSRSRSR 262
           K + S +RSRSRSRSRSRS                              RSRSRS   S+
Sbjct: 305 KKETSMSRSRSRSRSRSRSGIKDRSRKSDSKGRDQPKSEDEGGDPERGSRSRSRSPIESK 364

Query: 263 TARRNRSKSAERRSVSRSVSRSRSPSPIKS-SRPRSKSRSGSPRQAREGS 282
           +  R++SK       S+S S+SRSPSP K+ SR RS SRS S   +R  S
Sbjct: 365 SRARSKSK-------SKSKSKSRSPSPAKARSRSRSASRSESRSMSRSRS 407

HSP 7 Score: 39.7 bits (91), Expect = 1.0e+01
Identity = 32/93 (34.41%), Postives = 48/93 (51.61%), Query Frame = 1


Query: 202 KKYDGSPTRSRSRSRSRSRSRSRSRS-RSRSRTARRNRSKSAERR----------SVSRS 261
           ++ +G+    +SRSRS      +SRS +SRS  +R  +SK +++           S SRS
Sbjct: 256 ERSNGAQKSKKSRSRSPKSRSPKSRSPKSRSPKSRSPKSKKSKKEGKKGKKETSMSRSRS 315

Query: 262 VSRSRSPSPIKSSRPRSKSRS-GSPRQAREGSE 283
            SRSRS S IK    +S S+    P+   EG +
Sbjct: 316 RSRSRSRSGIKDRSRKSDSKGRDQPKSEDEGGD 348

HSP 8 Score: 171.0 bits (432), Expect = 2.9e-39
Identity = 115/279 (41.22%), Postives = 159/279 (56.99%), Query Frame = 1


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           +Y+G L    +E ++E  F  YG+IL+++LK       Y FVEF+ +RDA+DA+   +G 
Sbjct: 4   VYIGRLSYQARERDVERFFKGYGKILEVDLKNG-----YGFVEFDDLRDADDAVYELNGK 63

Query: 69  NFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRFGVSKRSEY 128
           +  G R+ VE A G R      R  SYG G  G G    G          ++G   R+EY
Sbjct: 64  DLCGERVIVEHARGPR------RDGSYGSGRSGYGYRRSGRD--------KYGPPTRTEY 123

Query: 129 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDT 188
           R+IV  L S  SWQDLKD+MR+AG+V +A+  +  +   G++++ +Y DMK A+ KLD T
Sbjct: 124 RLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE-GVIEFVSYSDMKRALEKLDGT 183

Query: 189 EFRNPWARAYIRVKKYDGSP-----TRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAE 248
           E      R    V+   GS      +RSRS SRSRSRSR   +SRSRS +++ + SKS  
Sbjct: 184 EVN---GRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS 243

Query: 249 R-RSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGS 282
           R RS SRS S+SRS S  +S   + KSRS S  Q+R  S
Sbjct: 244 RSRSGSRSRSKSRSRSQSRSRSKKDKSRSPSKDQSRSRS 259

The following BLAST results are available for this feature:

BLAST of Csa5G138510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SR34A_ARATH	1.2e-120	72.46	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana GN=SR34A PE=2...	[more]
SR34_ARATH	1.0e-92	62.94	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 S...	[more]
SRSF1_XENTR	2.6e-75	62.11	Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis GN=srsf1 PE=2 SV=1	[more]
SRS1A_DANRE	1.5e-72	61.11	Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a PE=2 SV=2	[more]
SRR55_DROME	1.2e-43	44.49	Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1 SV=4	[more]

BLAST of Csa5G138510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0P5QR27_9CRUS	2.8e-44	43.01	Putative Serine/arginine-rich splicing factor OS=Daphnia magna PE=4 SV=1	[more]
A0A0P5QR27_9CRUS	8.7e-06	42.22	Putative Serine/arginine-rich splicing factor OS=Daphnia magna PE=4 SV=1	[more]
A0A0P5FPD2_9CRUS	8.7e-06	42.22	Putative Serine/arginine-rich splicing factor (Fragment) OS=Daphnia magna PE=4 S...	[more]
A0A0P5VVJ2_9CRUS	8.7e-06	42.22	Putative Serine/arginine-rich splicing factor OS=Daphnia magna PE=4 SV=1	[more]
A0A0P4YG17_9CRUS	8.7e-06	42.22	Putative Serine/arginine-rich splicing factor OS=Daphnia magna PE=4 SV=1	[more]

BLAST of Csa5G138510 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49430.1	6.6e-122	72.46	SER/ARG-rich protein 34A	[more]
AT1G02840.1	5.8e-94	62.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G39260.1	1.2e-11	35.21	cold, circadian rhythm, and RNA binding 1	[more]
AT4G36230.1	1.0e-10	72.50	unknown protein	[more]
AT1G75550.1	2.6e-09	80.65	glycine-rich protein	[more]

BLAST of Csa5G138510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1004137305\|gb\|KXZ45332.1\|	2.7e-77	52.58	hypothetical protein GPECTOR_56g429 [Gonium pectorale]	[more]
gi\|159463554\|ref\|XP_001690007.1\|	1.1e-75	50.15	SR protein factor [Chlamydomonas reinhardtii]	[more]
gi\|159463554\|ref\|XP_001690007.1\|	1.9e-06	50.00	SR protein factor [Chlamydomonas reinhardtii]	[more]
gi\|657735195\|ref\|XP_008311424.1\|	4.7e-05	50.00	PREDICTED: serine/arginine-rich splicing factor 5 [Cynoglossus semilaevis]	[more]
gi\|657804353\|ref\|XP_008329294.1\|	2.6e-43	38.51	PREDICTED: serine/arginine-rich splicing factor 6-like isoform X1 [Cynoglossus s...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0008380	RNA splicing
biological_process	GO:0006414	translational elongation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003729	mRNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU091660	cucumber EST collection version 3.0	transcribed_cluster
CU092527	cucumber EST collection version 3.0	transcribed_cluster
CU106895	cucumber EST collection version 3.0	transcribed_cluster
CU135362	cucumber EST collection version 3.0	transcribed_cluster
CU168300	cucumber EST collection version 3.0	transcribed_cluster
CU169573	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G138510.1	Csa5G138510.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU106895	CU106895	transcribed_cluster
CU091660	CU091660	transcribed_cluster
CU168300	CU168300	transcribed_cluster
CU169573	CU169573	transcribed_cluster
CU135362	CU135362	transcribed_cluster
CU092527	CU092527	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 130..192 score: 5.7E-12coord: 9..76 score: 1.7
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 129..198 score: 1.3E-7coord: 8..78 score: 3.1
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 7..82 score: 16.568coord: 128..206 score: 10
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 124..218 score: 7.9E-28coord: 3..87 score: 1.4
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 125..198 score: 4.42E-38coord: 6..92 score: 4.42
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 6..93 score: 5.4E-33coord: 127..210 score: 5.4E-33coord: 264..274 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G138510	Cla000302	Watermelon (97103) v1	cuwmB360
Csa5G138510	ClCG01G000100	Watermelon (Charleston Gray)	cuwcgB374
Csa5G138510	LsiUNG001570	Bottle gourd (USVL1VR-Ls)	culsiB321
Csa5G138510	MELO3C033837.2	Melon (DHL92) v3.6.1	cumedB336
Csa5G138510	Cla97C01G000090	Watermelon (97103) v2	cuwmbB346
Csa5G138510	Bhi12G000601	Wax gourd	cuwgoB446
Csa5G138510	CSPI05G02740	Wild cucumber (PI 183967)	cpicuB240
Csa5G138510	CmoCh15G010560	Cucurbita moschata (Rifu)	cmocuB279
Csa5G138510	CmoCh02G011810	Cucurbita moschata (Rifu)	cmocuB602
Csa5G138510	CsGy5G000050	Cucumber (Gy14) v2	cgybcuB224

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G138510	Silver-seed gourd	carcuB0604
Csa5G138510	Wax gourd	cuwgoB453
Csa5G138510	Cucumber (Gy14) v1	cgycuB309
Csa5G138510	Cucurbita maxima (Rimu)	cmacuB292
Csa5G138510	Cucurbita moschata (Rifu)	cmocuB293
Csa5G138510	Melon (DHL92) v3.5.1	cumeB357
Csa5G138510	Watermelon (97103) v1	cuwmB408
Csa5G138510	Cucurbita pepo (Zucchini)	cpecuB183