Cla021968 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021968
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	YGGT family protein (AHRD V1 ***- D7M0R7_ARALL)
Location	Chr8 : 19163625 .. 19165400 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCAGACGAGTCGTCACTTCTAAACCCTAGACGAACTTCTACGGCTTTCAACTTCTTTCCAAATTGCATATCCTCATTCTCACCTGCATTTTCTCAAACACCTTCAGGACCATCCAGGAGAAGGCACGCTGAATTCCTCCCTCCATGTAATTTTCTTCGCGACCTCCATGATTCTTTCGCATCAAATACTGAAAGATGCATCAGATTTTTTCACTCATTGGCTTCTGAGAATCCATTTCTCAATAAATTGCTCTCGTTGCATTCTGAGTTCCAGAGTTTCCGTCACCAGGTAACTAACTGCAACTGTAATTTGACGGTTTCGTGAAATTCTGATTCGTGTTTCTAATGCAATTGCTCCGTTTCTTGCACTTCTGGCTGTGTGTACAGTTTGATTTTCAGATAGAATATGACACGCTTCTTCCGGTTAATTTTTTTCCCGGGGGTTTCAATTTTCTAATCTTTGCAGTACTTTGTTTTGAATTCTGTTTCAGGTCCACGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTGTGGCAGGACTTGTAGTCGCTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCGTCAGACTAGTTTTGACTTGGTTTCCAAACACACCTCCCGCCATTGTTAGTCCACTAAGGTAACTTTTTTATTTGTTTTTGTCTTAAGTATTCAAAGTGAAGAAAGAAGAGAGACGTTTTCATAATGATTGGTTGTGAGCCTGGAATGAGATTTCTGAACTGAATATAGCAGCAAGCTTTTATATCCTTACAGCTTGAAAGAGGGAAATATCTGTAGTGGGTGTTTGGCCAGAGTGATTTAGAAGTTAAAGTTGAAATGTATATTGTTTAAATTCTAAGCTATACTGATCCAACTCACATTCAAATTCACACTACTGATTCACTCATATGTTGTCTTTTGCTGTCTTTTGCTTCAGAAACAGATCTTAAAAACTGCTGTCAAACAAATATTATGGACAAAAAAAAAAGGCCCAAGAAGACTTTTTCTTATATAATAGAAGACAATAATTAGTTTATAAGAGTCTGTTTTTTGCGCTTAATATATACATATATATTTTTAACGTTAAAATACTTTTTAACACTCCATGTTTGAAACGACTTTCTAAATGCTCAAGTATAAACAAAATATTTTTAAGCATTTGATAAGTCACTTAAAGGGAAAAAAAAAACTTTAAAAATCATTTCAAGTCGACTCTAAGTGGGATAACCTCATAGTTATGATACCTCATATCTCATATATCTTTGTATCCACTATCAATTGCCTGCTGTGCTGCTAGCTGATGGGGTGTCTTTATTTTAGTTTGCCTTAGATTAGAAAATATGTAAAAATGAATAATAACAAGAATAAGAAGAATAAGATTTTTGTAATAATATATATAGAGAGAAAGTTACAATGTAAATTTTTGTGCTAATTGTCATGATTTGTTTCTCTCTCAGCACTTTATGCGACCCATATTTGAACATATTTCGTGGGATTATCCCACCTCTTGGAGGGACACTTGATTTATCTCCAATATTGGCATTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTGAACTTCCAGTCCCAAATTCGTCTCTTGCAAATCCTACTCCTTTAGAAGGCTCTGTTGATCTTACAACATCACAAAAGAAATGGATGAGAAGGCTTCAGGGAAGTGGAAAAAATAATGCCGATGCTGCTCAATAG

mRNA sequence

ATGACTCCAGACGAGTCGTCACTTCTAAACCCTAGACGAACTTCTACGGCTTTCAACTTCTTTCCAAATTGCATATCCTCATTCTCACCTGCATTTTCTCAAACACCTTCAGGACCATCCAGGAGAAGGCACGCTGAATTCCTCCCTCCATGTAATTTTCTTCGCGACCTCCATGATTCTTTCGCATCAAATACTGAAAGATGCATCAGATTTTTTCACTCATTGGCTTCTGAGAATCCATTTCTCAATAAATTGCTCTCGTTGCATTCTGAGTTCCAGAGTTTCCGTCACCAGGTCCACGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTGTGGCAGGACTTGTAGTCGCTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCGTCAGACTAGTTTTGACTTGGTTTCCAAACACACCTCCCGCCATTGTTAGTCCACTAAGCAAGCTTTTATATCCTTACAGCTTGAAAGAGGGAAATATCTGTATCCCAAATTCGTCTCTTGCAAATCCTACTCCTTTAGAAGGCTCTGTTGATCTTACAACATCACAAAAGAAATGGATGAGAAGGCTTCAGGGAAGTGGAAAAAATAATGCCGATGCTGCTCAATAG

Coding sequence (CDS)

ATGACTCCAGACGAGTCGTCACTTCTAAACCCTAGACGAACTTCTACGGCTTTCAACTTCTTTCCAAATTGCATATCCTCATTCTCACCTGCATTTTCTCAAACACCTTCAGGACCATCCAGGAGAAGGCACGCTGAATTCCTCCCTCCATGTAATTTTCTTCGCGACCTCCATGATTCTTTCGCATCAAATACTGAAAGATGCATCAGATTTTTTCACTCATTGGCTTCTGAGAATCCATTTCTCAATAAATTGCTCTCGTTGCATTCTGAGTTCCAGAGTTTCCGTCACCAGGTCCACGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTGTGGCAGGACTTGTAGTCGCTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCGTCAGACTAGTTTTGACTTGGTTTCCAAACACACCTCCCGCCATTGTTAGTCCACTAAGCAAGCTTTTATATCCTTACAGCTTGAAAGAGGGAAATATCTGTATCCCAAATTCGTCTCTTGCAAATCCTACTCCTTTAGAAGGCTCTGTTGATCTTACAACATCACAAAAGAAATGGATGAGAAGGCTTCAGGGAAGTGGAAAAAATAATGCCGATGCTGCTCAATAG

Protein sequence

MTPDESSLLNPRRTSTAFNFFPNCISSFSPAFSQTPSGPSRRRHAEFLPPCNFLRDLHDSFASNTERCIRFFHSLASENPFLNKLLSLHSEFQSFRHQVHGMNSRNFRALSSHNFAAVLPGDSVAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSKLLYPYSLKEGNICIPNSSLANPTPLEGSVDLTTSQKKWMRRLQGSGKNNADAAQ

Homology

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BLAST of Cla021968 vs. Swiss-Prot
Match: YLMG2_ARATH (YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana GN=YLMG2 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.1e-37
Identity = 95/213 (44.60%), Postives = 123/213 (57.75%), Query Frame = 1


Query: 22  PNCISSFSPAFSQTPSGPSRRRHAEFLPPC----NFLRDLHDSFASNTERCIRFFHSLAS 81
           PN   S S AF+QTP   S + +   LPP       ++D H S  S TE+   F HSLAS
Sbjct: 22  PNFFVSLSSAFTQTPLVRSNKPNLLLLPPVADSVKLIQDFHQSLISATEKFKGFLHSLAS 81

Query: 82  ENPFLNKLLSLHSEFQSFRHQVHGMNSRNFR-ALSSHNFAAVLPGDSVAGLVVANGIQNF 141
           +NP   + + L SEF     ++   N+   R A+S+H FAAVLPGDSVAGLVVANG+ NF
Sbjct: 82  KNPLFQEAVRLSSEFHILCDEIRLRNTTRVRFAMSNHGFAAVLPGDSVAGLVVANGLINF 141

Query: 142 LSLYNTLLVVRLVLTWFPNTPPAIVSPLSKLLYPY-SLKEGNI----------------- 201
           L++YNT+LVVRLVLTWFP+ PPAIV+PLS L  PY ++  G I                 
Sbjct: 142 LNIYNTILVVRLVLTWFPSAPPAIVNPLSTLCDPYLNIFRGFIPPLGGLDLSPILAFLVL 201

Query: 202 -CIPNSSLANPTPL---EGSVDLTTSQKKWMRR 208
               +S++A P  L   +G+V   +S+ KW+RR
Sbjct: 202 NAFTSSAMALPCELPSADGAVSPASSETKWVRR 234

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BLAST of Cla021968 vs. TrEMBL
Match: A0A0A0KDJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G362410 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 8.3e-89
Identity = 177/253 (69.96%), Postives = 194/253 (76.68%), Query Frame = 1


Query: 1   MTPDESSLLNPRRTSTAFNFFPNCISSFSPAFSQTPSGPSRRRHAEFLPPCNFLRDLHDS 60
           MTP +SSL NP++TSTAFNFFPNCISSFSPAFSQTPSGPSRRR  EF PPCNFLR LH+S
Sbjct: 1   MTPHDSSLQNPKQTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQLEFAPPCNFLRHLHES 60

Query: 61  FASNTERCIRFFHSLASENPFLNKLLSLHSEFQSFRHQVHGMNSRNFRALSSHNFAAVLP 120
           FAS TE CIR FHSLASENPFL+KLLSL SEF  FR+Q+HGMNS NFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSLASENPFLHKLLSLPSEFHRFRYQIHGMNSMNFRALSSHNFAAVLP 120

Query: 121 GDSVAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSKLLYPY-SLKEGNI- 180
           GDS+AGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLS L  PY ++  G I 
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 ------------------CIPNSSLANP-------------TPLEGSVDLTTSQKKWMRR 221
                                +++ A P              PL+GSVDLT+SQKKWM+R
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLKGSVDLTSSQKKWMKR 240

[Close]

BLAST of Cla021968 vs. TrEMBL
Match: W9RVQ9_9ROSA (Uncharacterized protein ycf19 OS=Morus notabilis GN=L484_018603 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.9e-41
Identity = 113/244 (46.31%), Postives = 135/244 (55.33%), Query Frame = 1


Query: 1   MTPDESSLLNPRRTSTAFNFFPNCISSFSPA-FSQTPSGPSRRRHAEFLPPCNFL--RDL 60
           M P ESS  +     TA NF  NC    S A F      P   +   F PP   L    L
Sbjct: 1   MAPSESSS-SDNSNHTASNFVTNCGLLLSSAKFDPFLRSPLSSKKPNFGPPNILLIGDHL 60

Query: 61  HDSFASNTERCIRFFHSLASENPFLNKLLSLHSEFQSFRHQVHGMNSRNFRALSSHNFAA 120
             S AS   +C+RFFHS AS+NP L K LSL  EF SF HQ+   + RN  ++SSHNFAA
Sbjct: 61  QSSIASAATKCLRFFHSFASQNPLLQKALSLPHEFHSFCHQIRCRSYRNVNSISSHNFAA 120

Query: 121 VLPGDSVAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSKLLYPY-SLKEG 180
           VLPGDSVAGLVVANGI NFL++YNT+L+VRLVLTWFPN PP IVSPLS +  PY ++  G
Sbjct: 121 VLPGDSVAGLVVANGIINFLNIYNTVLIVRLVLTWFPNVPPFIVSPLSTICDPYLNIFRG 180

Query: 181 NI-------------------CIPNSSLANPTPLEGS-----------VDLTTSQKKWMR 211
            I                      +++ A P  L  +            DLT+S+KKWMR
Sbjct: 181 IIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPAAESNQQTCSSSFSDLTSSEKKWMR 240

[Close]

BLAST of Cla021968 vs. TrEMBL
Match: M5XIX1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019472mg PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.1e-38
Identity = 89/146 (60.96%), Postives = 106/146 (72.60%), Query Frame = 1


Query: 54  LRDLHDSFASNTERCIRFFHSLASENPFLNKLLSLHSEFQSFRHQVHGMNSRNFRALSSH 113
           L D+  S AS T++C++  HSLAS+NPFL+KLLSL SEFQS  HQ+     R    LS+H
Sbjct: 14  LPDIPASIASATDKCLQLLHSLASQNPFLSKLLSLRSEFQSLCHQIRCRKHRQVETLSAH 73

Query: 114 NFAAVLPGDSVAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSKLLYPY-S 173
           NFAAVLPGDSVAGLVVANGI NFL+LYNTLLVVRLVLTWFPN+PPAIV PLS +  PY +
Sbjct: 74  NFAAVLPGDSVAGLVVANGISNFLNLYNTLLVVRLVLTWFPNSPPAIVGPLSTICDPYLN 133

Query: 174 LKEGNICIPNSSLANPTPLEGSVDLT 199
           +  G I           PL G++DL+
Sbjct: 134 IFRGLI----------PPLGGTLDLS 149

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BLAST of Cla021968 vs. TrEMBL
Match: A0A0K9R1I3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_122650 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-37
Identity = 93/202 (46.04%), Postives = 117/202 (57.92%), Query Frame = 1


Query: 48  LPPCNFLRDLHDSFASNTERCIRFFHSLASENPFLNKLLSLHSEFQSFRHQVHGMNSRNF 107
           L P   L + H + ASN E+C++F H  A++NP LN LL+  S  Q+F  Q H  + R+ 
Sbjct: 47  LSPVEILHNFHKTIASNAEKCLQFLHFSATQNPLLNNLLNFSSHLQNFS-QAHWRSHRSL 106

Query: 108 RALSSHNFAAVLPGDSVAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSKL 167
            +LSSHNFAAVLPGDSVAGLVVANGI NFL++YNTLLVVRLVLTWFP+ PP IVSPLS L
Sbjct: 107 NSLSSHNFAAVLPGDSVAGLVVANGISNFLNIYNTLLVVRLVLTWFPSAPPQIVSPLSTL 166

Query: 168 LYPYSLKEGNICIPNSSLANPTPL---------------------------EGSV----- 218
             PY      +  P     + +P+                           +GS+     
Sbjct: 167 CDPYLNIFRGLIPPLGGTLDLSPILAFLVLNAFTSASAALPAELPPAMGSQDGSLKPGLS 226

[Close]

BLAST of Cla021968 vs. TrEMBL
Match: D7M0R7_ARALL (YGGT family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489037 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-37
Identity = 99/213 (46.48%), Postives = 129/213 (60.56%), Query Frame = 1


Query: 22  PNCISSFSPAFSQTPSGPSRRRHAEFLPPC----NFLRDLHDSFASNTERCIRFFHSLAS 81
           PN   S S AF+QTP   S + +   LPP       ++D H S  S TE+   FFHSLAS
Sbjct: 22  PNFFVSLSSAFTQTPLVRSNKPNLLLLPPVADSVKLIQDFHRSLVSATEKFSGFFHSLAS 81

Query: 82  ENPFLNKLLSLHSEFQSFRHQVHGMNSRNFR-ALSSHNFAAVLPGDSVAGLVVANGIQNF 141
           +NP   + + L SEF+    ++   N+   R A+S+H FAAVLPGDSVAGLVVANG+ NF
Sbjct: 82  KNPLFQEAVRLSSEFRLLCDEIRLKNTTRVRFAMSNHGFAAVLPGDSVAGLVVANGLINF 141

Query: 142 LSLYNTLLVVRLVLTWFPNTPPAIVSPLSKLLYPY-SLKEGNI----------------- 201
           L++YNT+LVVRLVLTWFP+ PPAIV+PLS L  PY ++  G I                 
Sbjct: 142 LNIYNTILVVRLVLTWFPSAPPAIVNPLSTLCDPYLNIFRGFIPPLGGLDLSPILAFLVL 201

Query: 202 -CIPNSSLANP---TPLEGSVDLTTSQKKWMRR 208
               +S++A P    P EG+V L++S+ KWMRR
Sbjct: 202 NAFTSSAMALPCELPPAEGAVSLSSSETKWMRR 234

[Close]

BLAST of Cla021968 vs. NCBI nr
Match: gi|659089495|ref|XP_008445540.1| (PREDICTED: uncharacterized protein LOC103488523 [Cucumis melo])

HSP 1 Score: 342.8 bits (878), Expect = 4.4e-91
Identity = 183/253 (72.33%), Postives = 194/253 (76.68%), Query Frame = 1


Query: 1   MTPDESSLLNPRRTSTAFNFFPNCISSFSPAFSQTPSGPSRRRHAEFLPPCNFLRDLHDS 60
           MTP ESSL NP+RTSTAFNFFPNCISSFSPAFSQTPSGPSRRR  EF  PCNFLRDLH+S
Sbjct: 1   MTPHESSLQNPKRTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQPEFASPCNFLRDLHES 60

Query: 61  FASNTERCIRFFHSLASENPFLNKLLSLHSEFQSFRHQVHGMNSRNFRALSSHNFAAVLP 120
           FAS TE CIR FHS ASENPFL+KLLSL SEFQSFR Q+H MNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSFASENPFLHKLLSLPSEFQSFRFQIHSMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSVAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSKLLYPY-SLKEGNI- 180
           GDS+AGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLS L  PY ++  G I 
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 ------------------CIPNSSLANP-------------TPLEGSVDLTTSQKKWMRR 221
                                +++ A P              PLEGSVDLT+SQKKWMRR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLEGSVDLTSSQKKWMRR 240

[Close]

BLAST of Cla021968 vs. NCBI nr
Match: gi|449452935|ref|XP_004144214.1| (PREDICTED: uncharacterized protein LOC101210772 [Cucumis sativus])

HSP 1 Score: 334.7 bits (857), Expect = 1.2e-88
Identity = 177/253 (69.96%), Postives = 194/253 (76.68%), Query Frame = 1


Query: 1   MTPDESSLLNPRRTSTAFNFFPNCISSFSPAFSQTPSGPSRRRHAEFLPPCNFLRDLHDS 60
           MTP +SSL NP++TSTAFNFFPNCISSFSPAFSQTPSGPSRRR  EF PPCNFLR LH+S
Sbjct: 1   MTPHDSSLQNPKQTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQLEFAPPCNFLRHLHES 60

Query: 61  FASNTERCIRFFHSLASENPFLNKLLSLHSEFQSFRHQVHGMNSRNFRALSSHNFAAVLP 120
           FAS TE CIR FHSLASENPFL+KLLSL SEF  FR+Q+HGMNS NFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSLASENPFLHKLLSLPSEFHRFRYQIHGMNSMNFRALSSHNFAAVLP 120

Query: 121 GDSVAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSKLLYPY-SLKEGNI- 180
           GDS+AGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLS L  PY ++  G I 
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 ------------------CIPNSSLANP-------------TPLEGSVDLTTSQKKWMRR 221
                                +++ A P              PL+GSVDLT+SQKKWM+R
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLKGSVDLTSSQKKWMKR 240

[Close]

BLAST of Cla021968 vs. NCBI nr
Match: gi|645227548|ref|XP_008220572.1| (PREDICTED: uncharacterized protein LOC103320643 [Prunus mume])

HSP 1 Score: 179.5 bits (454), Expect = 6.4e-42
Identity = 108/231 (46.75%), Postives = 131/231 (56.71%), Query Frame = 1


Query: 17  AFNFFPNCISSFSPAFSQTPSGPSRRRHAEFLPPCNFLRDLHDSFASNTERCIRFFHSLA 76
           A NF PNC    +   S T   P  R  +    P   L D+  S AS T++C++  HSLA
Sbjct: 17  ASNFAPNC----AMLLSSTNFAPFLRA-SPLKKPNLVLPDIPASIASATDKCLQLLHSLA 76

Query: 77  SENPFLNKLLSLHSEFQSFRHQVHGMNSRNFRALSSHNFAAVLPGDSVAGLVVANGIQNF 136
           S+NPFL+KLLSL SEFQS  HQ+     R    LS+HNFAAVLPGDSVAGLVVANGI NF
Sbjct: 77  SQNPFLSKLLSLRSEFQSLCHQIRCRKHRQVEILSAHNFAAVLPGDSVAGLVVANGISNF 136

Query: 137 LSLYNTLLVVRLVLTWFPNTPPAIVSPLSKLLYPYSLKEGNICIPNSSLANPTPL----- 196
           L+LYNTLLVVRLVLTWFPN+PPAIV PLS +  PY      +  P     + +P+     
Sbjct: 137 LNLYNTLLVVRLVLTWFPNSPPAIVGPLSTICDPYLNIFRGLIPPLGGTLDLSPILAFLV 196

Query: 197 --------------------------EGSVDLTTSQKKWMRRLQGSGKNNA 217
                                      G  +L+TSQKKWM RLQG+   ++
Sbjct: 197 LNAFTSTAAALPAELPASSQQVTASPAGITNLSTSQKKWMTRLQGNNTKSS 242

[Close]

BLAST of Cla021968 vs. NCBI nr
Match: gi|703105946|ref|XP_010098371.1| (Uncharacterized protein ycf19 [Morus notabilis])

HSP 1 Score: 176.8 bits (447), Expect = 4.2e-41
Identity = 113/244 (46.31%), Postives = 135/244 (55.33%), Query Frame = 1


Query: 1   MTPDESSLLNPRRTSTAFNFFPNCISSFSPA-FSQTPSGPSRRRHAEFLPPCNFL--RDL 60
           M P ESS  +     TA NF  NC    S A F      P   +   F PP   L    L
Sbjct: 1   MAPSESSS-SDNSNHTASNFVTNCGLLLSSAKFDPFLRSPLSSKKPNFGPPNILLIGDHL 60

Query: 61  HDSFASNTERCIRFFHSLASENPFLNKLLSLHSEFQSFRHQVHGMNSRNFRALSSHNFAA 120
             S AS   +C+RFFHS AS+NP L K LSL  EF SF HQ+   + RN  ++SSHNFAA
Sbjct: 61  QSSIASAATKCLRFFHSFASQNPLLQKALSLPHEFHSFCHQIRCRSYRNVNSISSHNFAA 120

Query: 121 VLPGDSVAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSKLLYPY-SLKEG 180
           VLPGDSVAGLVVANGI NFL++YNT+L+VRLVLTWFPN PP IVSPLS +  PY ++  G
Sbjct: 121 VLPGDSVAGLVVANGIINFLNIYNTVLIVRLVLTWFPNVPPFIVSPLSTICDPYLNIFRG 180

Query: 181 NI-------------------CIPNSSLANPTPLEGS-----------VDLTTSQKKWMR 211
            I                      +++ A P  L  +            DLT+S+KKWMR
Sbjct: 181 IIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPAAESNQQTCSSSFSDLTSSEKKWMR 240

[Close]

BLAST of Cla021968 vs. NCBI nr
Match: gi|470135312|ref|XP_004303461.1| (PREDICTED: uncharacterized protein LOC101299599 [Fragaria vesca subsp. vesca])

HSP 1 Score: 173.3 bits (438), Expect = 4.6e-40
Identity = 110/249 (44.18%), Postives = 132/249 (53.01%), Query Frame = 1


Query: 2   TPDESSLLNPRRTSTAFNFFPNCISSFSPA----FSQTPSGPSRRRHAEFLPPCNFLRDL 61
           T   S+   P+    A +F PN     SP     F ++PS PS ++    LP      D+
Sbjct: 4   TESASASETPKPLLPAPHFTPNFSMLLSPTNFAPFLRSPS-PSHKKPTFVLP------DI 63

Query: 62  HDSFASNTERCIRFFHSLASENPFLNKLLSLHSEFQSFRHQVHGMNSRNFRALSSHNFAA 121
           H S AS TE      HSLAS NPFLNKL S H+EF++F HQV        ++LS+HNFAA
Sbjct: 64  HSSIASATE----LLHSLASRNPFLNKLFSFHAEFRTFCHQVQSTRQNKLKSLSTHNFAA 123

Query: 122 VLPGDSVAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSKLLYPYSLKEGN 181
           VLPGDSVAGLVVANG+ NFL+LYNTLLV RLVLTWFPN+PPAIV PLS +  PY      
Sbjct: 124 VLPGDSVAGLVVANGVSNFLNLYNTLLVCRLVLTWFPNSPPAIVGPLSTICDPYLNIFRG 183

Query: 182 ICIPNSSLANPTPL-----------------------------------EGSVDLTTSQK 212
           +  P     + +P+                                    G   LTT QK
Sbjct: 184 LIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPASSAASQELGASSTPGITQLTTLQK 241

The following BLAST results are available for this feature:

BLAST of Cla021968 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLMG2_ARATH	8.1e-37	44.60	YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana GN=YLMG2 PE=2 SV=1	[more]

BLAST of Cla021968 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDJ4_CUCSA	8.3e-89	69.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G362410 PE=4 SV=1	[more]
W9RVQ9_9ROSA	2.9e-41	46.31	Uncharacterized protein ycf19 OS=Morus notabilis GN=L484_018603 PE=4 SV=1	[more]
M5XIX1_PRUPE	5.1e-38	60.96	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019472mg PE=4 S...	[more]
A0A0K9R1I3_SPIOL	1.1e-37	46.04	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_122650 PE=4 SV=1	[more]
D7M0R7_ARALL	1.1e-37	46.48	YGGT family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489037 PE=...	[more]

BLAST of Cla021968 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089495\|ref\|XP_008445540.1\|	4.4e-91	72.33	PREDICTED: uncharacterized protein LOC103488523 [Cucumis melo]	[more]
gi\|449452935\|ref\|XP_004144214.1\|	1.2e-88	69.96	PREDICTED: uncharacterized protein LOC101210772 [Cucumis sativus]	[more]
gi\|645227548\|ref\|XP_008220572.1\|	6.4e-42	46.75	PREDICTED: uncharacterized protein LOC103320643 [Prunus mume]	[more]
gi\|703105946\|ref\|XP_010098371.1\|	4.2e-41	46.31	Uncharacterized protein ycf19 [Morus notabilis]	[more]
gi\|470135312\|ref\|XP_004303461.1\|	4.6e-40	44.18	PREDICTED: uncharacterized protein LOC101299599 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0010190	cytochrome b6f complex assembly
biological_process	GO:0090143	nucleoid organization
cellular_component	GO:0016020	membrane
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021968	Cla021968.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33219	FAMILY NOT NAMED	coord: 27..171 score: 3.0
None	No IPR available	PANTHER	PTHR33219:SF4	SUBFAMILY NOT NAMED	coord: 27..171 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021968	Cla97C08G152610	Watermelon (97103) v2	wmwmbB100
Cla021968	Csa6G362410	Cucumber (Chinese Long) v2	cuwmB456
Cla021968	MELO3C011488	Melon (DHL92) v3.5.1	mewmB301
Cla021968	ClCG08G009800	Watermelon (Charleston Gray)	wcgwmB400
Cla021968	CSPI06G19050	Wild cucumber (PI 183967)	cpiwmB471
Cla021968	Cucsa.056010	Cucumber (Gy14) v1	cgywmB045
Cla021968	CmaCh05G004130	Cucurbita maxima (Rimu)	cmawmB751
Cla021968	CmoCh05G004250	Cucurbita moschata (Rifu)	cmowmB746
Cla021968	Lsi08G008310	Bottle gourd (USVL1VR-Ls)	lsiwmB465
Cla021968	Cp4.1LG11g03480	Cucurbita pepo (Zucchini)	cpewmB099
Cla021968	CsGy6G018490	Cucumber (Gy14) v2	cgybwmB427
Cla021968	MELO3C011488.2	Melon (DHL92) v3.6.1	medwmB296
Cla021968	Carg09311	Silver-seed gourd	carwmB0134
Cla021968	CsaV3_6G031930	Cucumber (Chinese Long) v3	cucwmB481
Cla021968	Bhi04G001192	Wax gourd	wgowmB312

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021968	Cucurbita maxima (Rimu)	cmawmB153
Cla021968	Cucurbita moschata (Rifu)	cmowmB138
Cla021968	Cucurbita pepo (Zucchini)	cpewmB788
Cla021968	Silver-seed gourd	carwmB0128