Carg09311 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09311
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ylmG homolog protein 2, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_018 : 520902 .. 522855 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCTCTCTTCAATCCTTTTATCCTCTTCTTCCTCGGCTAGCTCTCTCAGAGACGAGCAAAGCAAGATGACTCCAGACGAGTCGTCGGTTCTAAACCCTAGACGAAGTTCCACGGCTTTTAGCTTCTTTCCAAATTGCATATCGTCGTTCTCACCGGCATTTTCTCAAACACCTTTTGGAGCGTCCAGGAGAAGGCACGTCGATTTTGTTCCACCATGTAAATTTCTTCGCGATCTCCATGAGTCTTTCGCGTTAACTGCTGAAAAGTGCATCGTGTTTTTTCACTCTTTAGCTTCTGAGAATCCGTTTCTCAATAAATTGATGTCGTTGTCTTCTGAGTTACAGAGTTTTCATCACCAGGTAAATAACTGCAAATTTCATGCTACCAACTGTATTTTGACGGTCTCGCGAAATTTGGATTCGTGCTTGTAATGCTACCTTCTCTTGCACTTCCATCCGTTTGTACAGTTTGATTTTCAGCTAGAATACGACCTGCTGCTTACGGTTAATTTTTCCTGGGGGTTTCGATTTTTCTAATTCGGTACTTCTGTTGAATTCTATTTCAGATCCATGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAACTTTGCGGCAGTTTTGCCTGGGGATTCGGTGGCAGGACTTTTGGTCACGAATGGTATTCAGAATTTCTTGAGCATCTACAACACACTGTTGGTCGTCAGGCTAGTTTTGACTTGGTTTCCGAACACACCTCCCGCCATCGTTAGTCCACTAAGGTAACTCTTCCTTGTTTTTGACATTCCTATAAAAAAAAAAAAAAAAAAAAGACGATAGAAGATAGACGCTTTCACAATGATTGACTGTGAAACTGGAATGAAATTTCTGAATGAACATAGAAGTTGAAAGTTGAAAGTTGAAAGTTGAAACTGTATGTTGTTTAAATTGTTAGTTCTACTGATCCAACTCATATTCAAATTCACATATACAAAACTACTGATTCAGTCATATGTCATCTTATGCTTAAGAAACATATCTTAAAAACTCTTCTGTCAATCAAATATTATGGATAAAAAAGCTGAAGAAAAATTCTTTCTTATATATTAGAAGAACAATAATTAGATGTTAAGAACTTTAGAACCACTTTTTCTAAGGTTTGGAAAGCATCTTTTGTCGAAATTTCAAGTATTTAATGCTGGTTTAGAACGAATTTTTAAGTGAACGGTTAGAAAGTCATTTCAAATAACCTCAACCTCATTGATCCGACACTGACAACAATCTTTGTGTTCATGGGTATTTCTCCGCGACTGCTCTTTGTTAGTTTGTGTACATAAAAACAGTTGTAATGTAAAGTTTGGTGCTAATTGTCATGGTTTGATTCTCTTTCAGCACGCTATGTGACCCATATTTGAACATATTTCGTGGGATTATCCCACCTCTTGGGGGGACACTTGATTTGTCTCCAATATTGGCATTCCTGGTCTTAAACGCCTTTACCAGCACCGCCGCTGCTCTTCCTGCCGAACTTCCAGTCCCAAATTCGTCTCTTGCAAATGCTACTCCTTCAAAAGGCTCATTTGATCTTACCACATCCCAAAAGAAATGGATCAGAAGGCTTCAGGGAAGTGGGGAAAATAAGGCTGATAGCGCTCGATAGCCCTCGAATTCAGGTTTGTATCAGTTGATTCAGCTCAATTCATTTGAAACTGTGACACTTTCATCGTTATAAAACTCTCTATTGTAAAGTGCGGTTGATGGGATTACTATTTTGTGCCACTTCTCTTGATTTTGTACTGTAAATCTTTTAGTTGAGTCATTTGGTGAGTTCACTTTCTTCCATCTCCAATGTTCAAGGCATGTGATGTGCAGATAAGAAATATTTTTTAAAAAATTGCATGTAAATTTTATATTTTGTAGAATTTTCACACTATTTGTCTCCCCTGATTTTGTTCTATTTAATCCATTTC

mRNA sequence

CATCTCTCTTCAATCCTTTTATCCTCTTCTTCCTCGGCTAGCTCTCTCAGAGACGAGCAAAGCAAGATGACTCCAGACGAGTCGTCGGTTCTAAACCCTAGACGAAGTTCCACGGCTTTTAGCTTCTTTCCAAATTGCATATCGTCGTTCTCACCGGCATTTTCTCAAACACCTTTTGGAGCGTCCAGGAGAAGGCACGTCGATTTTGTTCCACCATGTAAATTTCTTCGCGATCTCCATGAGTCTTTCGCGTTAACTGCTGAAAAGTGCATCGTGTTTTTTCACTCTTTAGCTTCTGAGAATCCGTTTCTCAATAAATTGATGTCGTTGTCTTCTGAGTTACAGAGTTTTCATCACCAGATCCATGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAACTTTGCGGCAGTTTTGCCTGGGGATTCGGTGGCAGGACTTTTGGTCACGAATGGTATTCAGAATTTCTTGAGCATCTACAACACACTGTTGGTCGTCAGGCTAGTTTTGACTTGGTTTCCGAACACACCTCCCGCCATCGTTAGTCCACTAAGCACGCTATGTGACCCATATTTGAACATATTTCGTGGGATTATCCCACCTCTTGGGGGGACACTTGATTTGTCTCCAATATTGGCATTCCTGGTCTTAAACGCCTTTACCAGCACCGCCGCTGCTCTTCCTGCCGAACTTCCAGTCCCAAATTCGTCTCTTGCAAATGCTACTCCTTCAAAAGGCTCATTTGATCTTACCACATCCCAAAAGAAATGGATCAGAAGGCTTCAGGGAAGTGGGGAAAATAAGGCTGATAGCGCTCGATAGCCCTCGAATTCAGGTTTGTATCAGTTGATTCAGCTCAATTCATTTGAAACTGTGACACTTTCATCGTTATAAAACTCTCTATTGTAAAGTGCGGTTGATGGGATTACTATTTTGTGCCACTTCTCTTGATTTTGTACTGTAAATCTTTTAGTTGAGTCATTTGGTGAGTTCACTTTCTTCCATCTCCAATGTTCAAGGCATGTGATGTGCAGATAAGAAATATTTTTTAAAAAATTGCATGTAAATTTTATATTTTGTAGAATTTTCACACTATTTGTCTCCCCTGATTTTGTTCTATTTAATCCATTTC

Coding sequence (CDS)

ATGACTCCAGACGAGTCGTCGGTTCTAAACCCTAGACGAAGTTCCACGGCTTTTAGCTTCTTTCCAAATTGCATATCGTCGTTCTCACCGGCATTTTCTCAAACACCTTTTGGAGCGTCCAGGAGAAGGCACGTCGATTTTGTTCCACCATGTAAATTTCTTCGCGATCTCCATGAGTCTTTCGCGTTAACTGCTGAAAAGTGCATCGTGTTTTTTCACTCTTTAGCTTCTGAGAATCCGTTTCTCAATAAATTGATGTCGTTGTCTTCTGAGTTACAGAGTTTTCATCACCAGATCCATGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAACTTTGCGGCAGTTTTGCCTGGGGATTCGGTGGCAGGACTTTTGGTCACGAATGGTATTCAGAATTTCTTGAGCATCTACAACACACTGTTGGTCGTCAGGCTAGTTTTGACTTGGTTTCCGAACACACCTCCCGCCATCGTTAGTCCACTAAGCACGCTATGTGACCCATATTTGAACATATTTCGTGGGATTATCCCACCTCTTGGGGGGACACTTGATTTGTCTCCAATATTGGCATTCCTGGTCTTAAACGCCTTTACCAGCACCGCCGCTGCTCTTCCTGCCGAACTTCCAGTCCCAAATTCGTCTCTTGCAAATGCTACTCCTTCAAAAGGCTCATTTGATCTTACCACATCCCAAAAGAAATGGATCAGAAGGCTTCAGGGAAGTGGGGAAAATAAGGCTGATAGCGCTCGATAG

Protein sequence

MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHESFALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGMNSRNFRALSSHNFAAVLPGDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRRLQGSGENKADSAR

Homology

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BLAST of Carg09311 vs. NCBI nr
Match: XP_022961827.1 (ylmG homolog protein 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 494.2 bits (1271), Expect = 2.6e-136
Identity = 251/253 (99.21%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60
           MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES
Sbjct: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60

Query: 61  FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGMNSRNFRALSSHNFAAVLP 120
           FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHG+NSRNFRALSSHNFAAVLP
Sbjct: 61  FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGLNSRNFRALSSHNFAAVLP 120

Query: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLT+SQKKWIRR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTSSQKKWIRR 240

Query: 241 LQGSGENKADSAR 254
           LQGSGENKADSAR
Sbjct: 241 LQGSGENKADSAR 253

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BLAST of Carg09311 vs. NCBI nr
Match: XP_023547092.1 (ylmG homolog protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 485.7 bits (1249), Expect = 9.4e-134
Identity = 249/253 (98.42%), Postives = 249/253 (98.42%), Query Frame = 0


Query: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60
           MTPDESSVLNPRRSSTAFSF PNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES
Sbjct: 1   MTPDESSVLNPRRSSTAFSFVPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60

Query: 61  FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGMNSRNFRALSSHNFAAVLP 120
           FA TAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGMNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSS ANATPSKGSFDLTTSQKKWIRR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSPANATPSKGSFDLTTSQKKWIRR 240

Query: 241 LQGSGENKADSAR 254
           LQGS ENKADSAR
Sbjct: 241 LQGSVENKADSAR 253

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BLAST of Carg09311 vs. NCBI nr
Match: XP_022997245.1 (ylmG homolog protein 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 478.0 bits (1229), Expect = 2.0e-131
Identity = 243/251 (96.81%), Postives = 246/251 (98.01%), Query Frame = 0


Query: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60
           MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFG SRRRHVDF PP KFLRDLHES
Sbjct: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGGSRRRHVDFFPPRKFLRDLHES 60

Query: 61  FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGMNSRNFRALSSHNFAAVLP 120
           FA TAEKCIVFFHSLASENPFL+KLMSLSSE QSFHHQIHGMNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTAEKCIVFFHSLASENPFLDKLMSLSSEFQSFHHQIHGMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDSVAG+LVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSVAGILVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR 240

Query: 241 LQGSGENKADS 252
           LQGSGENKAD+
Sbjct: 241 LQGSGENKADT 251

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BLAST of Carg09311 vs. NCBI nr
Match: XP_022131764.1 (ylmG homolog protein 2, chloroplastic [Momordica charantia])

HSP 1 Score: 432.2 bits (1110), Expect = 1.2e-117
Identity = 219/253 (86.56%), Postives = 229/253 (90.51%), Query Frame = 0


Query: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60
           M PDESSVLNPRR ST F+F PNC+SSFSPAFSQT FG SRRRH DF PPC FLRDLHES
Sbjct: 1   MAPDESSVLNPRRRSTGFNFVPNCVSSFSPAFSQTAFGVSRRRHADFGPPCNFLRDLHES 60

Query: 61  FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGMNSRNFRALSSHNFAAVLP 120
           FA TAEKCIVF HSLASENPFL KL+SLSSE QSF HQIH MNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTAEKCIVFVHSLASENPFLKKLLSLSSEFQSFRHQIHCMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDS+AG++V+NGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSLAGIVVSNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPN+SLAN TP KGS DLTTSQ KW+RR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNTSLANPTPLKGSADLTTSQNKWMRR 240

Query: 241 LQGSGENKADSAR 254
           LQG G   AD +R
Sbjct: 241 LQGIGTRNADGSR 253

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BLAST of Carg09311 vs. NCBI nr
Match: XP_008445540.1 (PREDICTED: ylmG homolog protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 413.7 bits (1062), Expect = 4.5e-112
Identity = 209/251 (83.27%), Postives = 224/251 (89.24%), Query Frame = 0


Query: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60
           MTP ESS+ NP+R+STAF+FFPNCISSFSPAFSQTP G SRRR  +F  PC FLRDLHES
Sbjct: 1   MTPHESSLQNPKRTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQPEFASPCNFLRDLHES 60

Query: 61  FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGMNSRNFRALSSHNFAAVLP 120
           FA T E CI  FHS ASENPFL+KL+SL SE QSF  QIH MNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSFASENPFLHKLLSLPSEFQSFRFQIHSMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDS+AGL+V NGIQNFLS+YNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELP PNSSLAN  P +GS DLT+SQKKW+RR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLEGSVDLTSSQKKWMRR 240

Query: 241 LQGSGENKADS 252
           LQGSG+N AD+
Sbjct: 241 LQGSGKNNADA 251

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BLAST of Carg09311 vs. TAIR10
Match: AT5G21920.1 (YGGT family protein)

HSP 1 Score: 221.5 bits (563), Expect = 6.0e-58
Identity = 126/224 (56.25%), Postives = 155/224 (69.20%), Query Frame = 0


Query: 22  PNCISSFSPAFSQTPFGASRRRHVDFVPP----CKFLRDLHESFALTAEKCIVFFHSLAS 81
           PN   S S AF+QTP   S + ++  +PP     K ++D H+S     EK   F HSLAS
Sbjct: 22  PNFFVSLSSAFTQTPLVRSNKPNLLLLPPVADSVKLIQDFHQSLISATEKFKGFLHSLAS 81

Query: 82  ENPFLNKLMSLSSELQSFHHQIHGMNSRNFR-ALSSHNFAAVLPGDSVAGLLVTNGIQNF 141
           +NP   + + LSSE      +I   N+   R A+S+H FAAVLPGDSVAGL+V NG+ NF
Sbjct: 82  KNPLFQEAVRLSSEFHILCDEIRLRNTTRVRFAMSNHGFAAVLPGDSVAGLVVANGLINF 141

Query: 142 LSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLV 201
           L+IYNT+LVVRLVLTWFP+ PPAIV+PLSTLCDPYLNIFRG IPPLGG LDLSPILAFLV
Sbjct: 142 LNIYNTILVVRLVLTWFPSAPPAIVNPLSTLCDPYLNIFRGFIPPLGG-LDLSPILAFLV 201

Query: 202 LNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR 241
           LNAFTS+A ALP ELP  + +++ A          +S+ KW+RR
Sbjct: 202 LNAFTSSAMALPCELPSADGAVSPA----------SSETKWVRR 234

[Close]

BLAST of Carg09311 vs. TAIR10
Match: AT3G07430.1 (YGGT family protein)

HSP 1 Score: 78.2 bits (191), Expect = 8.2e-15
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 128 LVTNGIQNFLSIYNTLLVVRLVLTWFPNTP--PAIVSPLSTLCDPYLNIFRGIIPPLGGT 187
           +V  GI+ +L IY+ +L+VR++L+WFPN P     +S +  LCDPYLN+FR IIPP+  T
Sbjct: 149 VVAVGIKKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDT 208

Query: 188 LDLSPILAFLVLNAFTS 203
           LD+SP+LAF VL    S
Sbjct: 209 LDVSPLLAFAVLGTLGS 225

[Close]

BLAST of Carg09311 vs. TAIR10
Match: AT4G27990.1 (YGGT family protein)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 48/105 (45.71%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 106 NFRALSSHNFAAVLPGDSVAGLL------VTNGIQNFLSIYNTLLVVRLVLTWFPNTP-- 165
           +FR  S   FA++   D  AG L      V  G+  +L IY+ +L+VR++L+WFPN P  
Sbjct: 109 SFRTASPLFFASL--RDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVLLSWFPNIPWD 168

Query: 166 PAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAFTS 203
              +S +  LCDPYLN+FR IIPP+  TLD+SP+LAF VL    S
Sbjct: 169 RQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGS 211

[Close]

BLAST of Carg09311 vs. Swiss-Prot
Match: sp|Q9C595|YLMG2_ARATH (YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-56
Identity = 126/224 (56.25%), Postives = 155/224 (69.20%), Query Frame = 0


Query: 22  PNCISSFSPAFSQTPFGASRRRHVDFVPP----CKFLRDLHESFALTAEKCIVFFHSLAS 81
           PN   S S AF+QTP   S + ++  +PP     K ++D H+S     EK   F HSLAS
Sbjct: 22  PNFFVSLSSAFTQTPLVRSNKPNLLLLPPVADSVKLIQDFHQSLISATEKFKGFLHSLAS 81

Query: 82  ENPFLNKLMSLSSELQSFHHQIHGMNSRNFR-ALSSHNFAAVLPGDSVAGLLVTNGIQNF 141
           +NP   + + LSSE      +I   N+   R A+S+H FAAVLPGDSVAGL+V NG+ NF
Sbjct: 82  KNPLFQEAVRLSSEFHILCDEIRLRNTTRVRFAMSNHGFAAVLPGDSVAGLVVANGLINF 141

Query: 142 LSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLV 201
           L+IYNT+LVVRLVLTWFP+ PPAIV+PLSTLCDPYLNIFRG IPPLGG LDLSPILAFLV
Sbjct: 142 LNIYNTILVVRLVLTWFPSAPPAIVNPLSTLCDPYLNIFRGFIPPLGG-LDLSPILAFLV 201

Query: 202 LNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR 241
           LNAFTS+A ALP ELP  + +++ A          +S+ KW+RR
Sbjct: 202 LNAFTSSAMALPCELPSADGAVSPA----------SSETKWVRR 234

[Close]

BLAST of Carg09311 vs. Swiss-Prot
Match: sp|Q9SRS3|YMG11_ARATH (YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-1 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-13
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 128 LVTNGIQNFLSIYNTLLVVRLVLTWFPNTP--PAIVSPLSTLCDPYLNIFRGIIPPLGGT 187
           +V  GI+ +L IY+ +L+VR++L+WFPN P     +S +  LCDPYLN+FR IIPP+  T
Sbjct: 149 VVAVGIKKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDT 208

Query: 188 LDLSPILAFLVLNAFTS 203
           LD+SP+LAF VL    S
Sbjct: 209 LDVSPLLAFAVLGTLGS 225

[Close]

BLAST of Carg09311 vs. Swiss-Prot
Match: sp|Q9SUE0|YMG12_ARATH (YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-2 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-13
Identity = 48/105 (45.71%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 106 NFRALSSHNFAAVLPGDSVAGLL------VTNGIQNFLSIYNTLLVVRLVLTWFPNTP-- 165
           +FR  S   FA++   D  AG L      V  G+  +L IY+ +L+VR++L+WFPN P  
Sbjct: 109 SFRTASPLFFASL--RDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVLLSWFPNIPWD 168

Query: 166 PAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAFTS 203
              +S +  LCDPYLN+FR IIPP+  TLD+SP+LAF VL    S
Sbjct: 169 RQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGS 211

[Close]

BLAST of Carg09311 vs. Swiss-Prot
Match: sp|O78424|YCF19_GUITH (Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-08
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 128 LVTNGIQNFLSIYNTLLVVRLVLTWFPNTP--PAIVSPLSTLCDPYLNIFRGIIPPLGGT 187
           L+ +    FL IY  LL++R+ LTWFPN          LS + DPYL +FRGI+PPL G 
Sbjct: 7   LLFSSFIGFLQIYLILLLIRVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIVPPLIG- 66

Query: 188 LDLSPILAFLVL 198
           +D+SPIL F++L
Sbjct: 67  IDISPILGFILL 77

[Close]

BLAST of Carg09311 vs. Swiss-Prot
Match: sp|O31729|YLMG_BACSU (Uncharacterized membrane protein YlmG OS=Bacillus subtilis (strain 168) OX=224308 GN=ylmG PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.7e-06
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 123 SVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSP-LSTLCDPYLNIFRGIIPP 182
           SV  LL+T        IY+  L++ + ++W P+T    V   L+++C+PYL  FR IIPP
Sbjct: 8   SVLSLLIT--------IYSFALIIYIFMSWVPSTRETAVGRFLASICEPYLEPFRKIIPP 67

Query: 183 LGGTLDLSPILAFLVLNAFTS 203
           +   LD+SPI+A LVL   T+
Sbjct: 68  I-AMLDISPIVAILVLRFATT 79

[Close]

BLAST of Carg09311 vs. TrEMBL
Match: tr|A0A1S3BDU1|A0A1S3BDU1_CUCME (ylmG homolog protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488523 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 3.0e-112
Identity = 209/251 (83.27%), Postives = 224/251 (89.24%), Query Frame = 0


Query: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60
           MTP ESS+ NP+R+STAF+FFPNCISSFSPAFSQTP G SRRR  +F  PC FLRDLHES
Sbjct: 1   MTPHESSLQNPKRTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQPEFASPCNFLRDLHES 60

Query: 61  FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGMNSRNFRALSSHNFAAVLP 120
           FA T E CI  FHS ASENPFL+KL+SL SE QSF  QIH MNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSFASENPFLHKLLSLPSEFQSFRFQIHSMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDS+AGL+V NGIQNFLS+YNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELP PNSSLAN  P +GS DLT+SQKKW+RR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLEGSVDLTSSQKKWMRR 240

Query: 241 LQGSGENKADS 252
           LQGSG+N AD+
Sbjct: 241 LQGSGKNNADA 251

[Close]

BLAST of Carg09311 vs. TrEMBL
Match: tr|A0A0A0KDJ4|A0A0A0KDJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G362410 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 7.4e-111
Identity = 205/253 (81.03%), Postives = 226/253 (89.33%), Query Frame = 0


Query: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60
           MTP +SS+ NP+++STAF+FFPNCISSFSPAFSQTP G SRRR ++F PPC FLR LHES
Sbjct: 1   MTPHDSSLQNPKQTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQLEFAPPCNFLRHLHES 60

Query: 61  FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGMNSRNFRALSSHNFAAVLP 120
           FA T E CI  FHSLASENPFL+KL+SL SE   F +QIHGMNS NFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSLASENPFLHKLLSLPSEFHRFRYQIHGMNSMNFRALSSHNFAAVLP 120

Query: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDS+AGL+V NGIQNFLS+YNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELP PNSSLAN  P KGS DLT+SQKKW++R
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLKGSVDLTSSQKKWMKR 240

Query: 241 LQGSGENKADSAR 254
           LQGS +N AD+++
Sbjct: 241 LQGSEKNNADASQ 253

[Close]

BLAST of Carg09311 vs. TrEMBL
Match: tr|A0A067KCS5|A0A067KCS5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07597 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 8.6e-67
Identity = 143/234 (61.11%), Postives = 171/234 (73.08%), Query Frame = 0


Query: 19  SFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHESFALTAEKCIVFFHSLASE 78
           SF PNC+   S   +Q PF    + +    P C  + +LH S   TA+KC+ F H  ASE
Sbjct: 14  SFMPNCV-LISSWVAQNPFLKPLKPNNLASPNC-MIHELHTSLTSTADKCLRFLHLFASE 73

Query: 79  NPFLNKLMSLSSELQSFHHQIHGMNSRNFRALSSHNFAAVLPGDSVAGLLVTNGIQNFLS 138
           NP L ++ SL S+  +   QI   N  N +++S+H FAA+LPGDSVAG++V NGI NFL+
Sbjct: 74  NPILKRIFSLPSDFSNHLAQIQCKNKCNGKSVSNHKFAAILPGDSVAGVVVANGILNFLN 133

Query: 139 IYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLN 198
           IYNTLL+VRLVLTWFPN+PPAIVSPLST+CDPYLNIFRGIIPPLGGTLDLSPILAFLVLN
Sbjct: 134 IYNTLLIVRLVLTWFPNSPPAIVSPLSTICDPYLNIFRGIIPPLGGTLDLSPILAFLVLN 193

Query: 199 AFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRRLQGSGENKADSA 253
           AFTSTAAALPAELP  N+S    TP     +LTTSQKKW+RRL G   NK+ S+
Sbjct: 194 AFTSTAAALPAELPKTNASQGRCTPQTSFSNLTTSQKKWMRRLYG---NKSHSS 242

[Close]

BLAST of Carg09311 vs. TrEMBL
Match: tr|A0A2I4E3R1|A0A2I4E3R1_9ROSI (ylmG homolog protein 2, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC108985993 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.5e-66
Identity = 138/206 (66.99%), Postives = 157/206 (76.21%), Query Frame = 0


Query: 47  FVPPCKFLRDLHESFALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGMNSRN 106
           FV P   LRDL  S   TA+KC  F    AS+NP LNK++SLSS+ Q F  QI+  N RN
Sbjct: 59  FVRPSVLLRDLRCSVMSTADKCFRFLLLFASQNPLLNKVLSLSSQFQGFCQQINCRNYRN 118

Query: 107 FRALSSHNFAAVLPGDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLST 166
             +L +HNFAAVLPGDSVAG++V NGI NFL+IYNTLL+VRLVLTWFPNTPPAIVSPLST
Sbjct: 119 VNSLYNHNFAAVLPGDSVAGIVVANGISNFLNIYNTLLIVRLVLTWFPNTPPAIVSPLST 178

Query: 167 LCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKG 226
           LCDPYLNIFRGIIPPLGGTLD SPILAFLVLNAFTSTAAALPAELP   +S  +      
Sbjct: 179 LCDPYLNIFRGIIPPLGGTLDFSPILAFLVLNAFTSTAAALPAELPATGTSEESPVSLDK 238

Query: 227 SFDLTTSQKKWIRRLQGSGENKADSA 253
             ++TTSQKKW+RRL G+    +  A
Sbjct: 239 FTNITTSQKKWMRRLHGNRSKSSGGA 264

[Close]

BLAST of Carg09311 vs. TrEMBL
Match: tr|W9RVQ9|W9RVQ9_9ROSA (Uncharacterized protein ycf19 OS=Morus notabilis OX=981085 GN=L484_018603 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.2e-66
Identity = 152/256 (59.38%), Postives = 177/256 (69.14%), Query Frame = 0


Query: 1   MTPDESSVLNPRRSSTAFSFFPNC-----ISSFSPAFSQTPFGASRRRHVDFVPPCKFL- 60
           M P ESS  +   + TA +F  NC      + F P F ++P  + +    +F PP   L 
Sbjct: 1   MAPSESS-SSDNSNHTASNFVTNCGLLLSSAKFDP-FLRSPLSSKK---PNFGPPNILLI 60

Query: 61  -RDLHESFALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGMNSRNFRALSSH 120
              L  S A  A KC+ FFHS AS+NP L K +SL  E  SF HQI   + RN  ++SSH
Sbjct: 61  GDHLQSSIASAATKCLRFFHSFASQNPLLQKALSLPHEFHSFCHQIRCRSYRNVNSISSH 120

Query: 121 NFAAVLPGDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLN 180
           NFAAVLPGDSVAGL+V NGI NFL+IYNT+L+VRLVLTWFPN PP IVSPLST+CDPYLN
Sbjct: 121 NFAAVLPGDSVAGLVVANGIINFLNIYNTVLIVRLVLTWFPNVPPFIVSPLSTICDPYLN 180

Query: 181 IFRGIIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTS 240
           IFRGIIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELP   S+    T S    DLT+S
Sbjct: 181 IFRGIIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPAAESN--QQTCSSSFSDLTSS 240

Query: 241 QKKWIRRLQGSGENKA 250
           +KKW+RRL G    K+
Sbjct: 241 EKKWMRRLHGGNGTKS 249

The following BLAST results are available for this feature:

BLAST of Carg09311 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961827.1	2.6e-136	99.21	ylmG homolog protein 2, chloroplastic [Cucurbita moschata]	[more]
XP_023547092.1	9.4e-134	98.42	ylmG homolog protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022997245.1	2.0e-131	96.81	ylmG homolog protein 2, chloroplastic [Cucurbita maxima]	[more]
XP_022131764.1	1.2e-117	86.56	ylmG homolog protein 2, chloroplastic [Momordica charantia]	[more]
XP_008445540.1	4.5e-112	83.27	PREDICTED: ylmG homolog protein 2, chloroplastic [Cucumis melo]	[more]

BLAST of Carg09311 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G21920.1	6.0e-58	56.25	YGGT family protein	[more]
AT3G07430.1	8.2e-15	51.95	YGGT family protein	[more]
AT4G27990.1	1.1e-14	45.71	YGGT family protein	[more]

BLAST of Carg09311 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C595\|YLMG2_ARATH	1.1e-56	56.25	YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 P...	[more]
sp\|Q9SRS3\|YMG11_ARATH	1.5e-13	51.95	YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1...	[more]
sp\|Q9SUE0\|YMG12_ARATH	1.9e-13	45.71	YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1...	[more]
sp\|O78424\|YCF19_GUITH	1.9e-08	48.61	Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1	[more]
sp\|O31729\|YLMG_BACSU	6.7e-06	40.74	Uncharacterized membrane protein YlmG OS=Bacillus subtilis (strain 168) OX=22430...	[more]

BLAST of Carg09311 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BDU1\|A0A1S3BDU1_CUCME	3.0e-112	83.27	ylmG homolog protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488523 PE...	[more]
tr\|A0A0A0KDJ4\|A0A0A0KDJ4_CUCSA	7.4e-111	81.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G362410 PE=4 SV=1	[more]
tr\|A0A067KCS5\|A0A067KCS5_JATCU	8.6e-67	61.11	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07597 PE=4 SV=1	[more]
tr\|A0A2I4E3R1\|A0A2I4E3R1_9ROSI	5.5e-66	66.99	ylmG homolog protein 2, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC10898...	[more]
tr\|W9RVQ9\|W9RVQ9_9ROSA	7.2e-66	59.38	Uncharacterized protein ycf19 OS=Morus notabilis OX=981085 GN=L484_018603 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR003425	CCB3/YggT

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09311-RA	Carg09311-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 136..199 e-value: 1.2E-15 score: 57.6
IPR003425	CCB3/YggT	PANTHER	PTHR33219	FAMILY NOT NAMED	coord: 19..226
None	No IPR available	PANTHER	PTHR33219:SF4	YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC	coord: 19..226

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09311	Cla021968	Watermelon (97103) v1	carwmB0134
Carg09311	Csa6G362410	Cucumber (Chinese Long) v2	carcuB0158
Carg09311	MELO3C011488	Melon (DHL92) v3.5.1	carmeB0142
Carg09311	ClCG08G009800	Watermelon (Charleston Gray)	carwcgB0138
Carg09311	CSPI06G19050	Wild cucumber (PI 183967)	carcpiB0163
Carg09311	Cucsa.056010	Cucumber (Gy14) v1	carcgyB0168
Carg09311	CmaCh05G004130	Cucurbita maxima (Rimu)	carcmaB0189
Carg09311	CmoCh05G004250	Cucurbita moschata (Rifu)	carcmoB0196
Carg09311	Lsi08G008310	Bottle gourd (USVL1VR-Ls)	carlsiB129
Carg09311	Cp4.1LG11g03480	Cucurbita pepo (Zucchini)	carcpeB0199
Carg09311	CsGy6G018490	Cucumber (Gy14) v2	carcgybB0156
Carg09311	MELO3C011488.2	Melon (DHL92) v3.6.1	carmedB0146
Carg09311	CsaV3_6G031930	Cucumber (Chinese Long) v3	carcucB0166
Carg09311	Cla97C08G152610	Watermelon (97103) v2	carwmbB0150
Carg09311	Bhi04G001192	Wax gourd	carwgoB0174

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09311	Wax gourd	carwgoB0177
Carg09311	Silver-seed gourd	carcarB168