Cla021304 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021304
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KP55_ARALL); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Location	Chr5 : 2011643 .. 2014098 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCGAACCTCCACCAGTAACATTCTCCATCAACTTCATCCCAAACAGCCGCTAGTTAATGGAAATCCTGGGAGTTCGTATTCTTGTTACTGGAGAGGCTCAATTGCTCAAACATTCGGAGTCTTAAGATCTCGCCGAAGATGCTCTCAATTGGCTACTGTTGCTGCCATTGTTGAGGAATTTCACAAATTAGAGAGTGAAAGAGAGAAGCCAAGGTTTCGATGGGTCGAGGTGGGCTCTGATATTACTGAAATGCAGAAGAAAGCTATATCTCAGCTTCCTGCTAAGATGACTAAAAGATGTAAGGCTCTGATGAAACAACTTATATGTTTTTCGCCTCAGAAGGGTAATTTATCAGATATGTTGGCGGCTTGGGTGAGGATTATGAAGCCTGAAAGAGCAGATTGGCTTTCAGTTCTTAAGCATATGAGGATCTCGAATCATCCTCTTTACATCGAGGTATGTAAAATCTCATATAATTTCATAAATTTACTGAATAACAAGCTTAGTCTATCAACATTAAGTTTGTCTGTTTATTCTTCAAAGTTTGTGTGTCTAATAGATTTCATTTTTTCTATTTTGTAATTAATAAATCCATCTACTAAAATAAATTCGAGTTTCAACACTAAACTTTCAATTTTATACGGATTTTAGAAACTTTAAAGCTCTAGATTAAATTTGTAATTTCGATTATTTAGAGACTAAGTAATCACATTGCTGACTTTTTTCTTTTTTTTTTTGTTGATCTTATGTTAGATACGACCGAGTCTGCCAGCCTGGTTAGCATATTTGTTTAATTTCTCATTGTTAAGATTCTCCCGTTCCTTGAGTTCGACAGAGCCATTTATGTCAAGGATGCTTAAGAACGATTTTAAAATATAGGACATGGGTAGAAATGGATTCAATCTAGATTCAATCTAGGATGGTCACTTAGCTAAGATTTAATATCCTACGTGTTTTCTTACCACAAAAATATTATAAGATCAGGTGGGATATCTAAATGGACGCCAATTGGCCCAAATACTCACAGATTAAAAAATTAATAATTATTATTTTGTACTTTATCTAAAAAAAACTTGGGTTGAAATCAAAGGAAACTTCTTATGCATATCATATGAATTTATGACAATCAAATATTATAAGGTCAAACAATTAAAATAGTTGCATGGACTCGGATCCTGTATTTGAAAATTATATGATTTTCAATTACTGTAGAAGTTTTCAAAATTTCACTTTAAATTGTATGATGTAGTTGCAACTATCATTTAGATTCTTGGTTATGTTTAAGAGAAGTATCATTTTGCATATTCAAAGTTGATACGTAAAAGTTCCTATTTATTAAGGCTTCGTTTGATAATTTTTTTTTTTTTTTTAAAACTAAGCTTATAAACATTATTTTCACCCAAGTTTTAAATCTACATTATTTTATCTACTTTATAATCATGTTTTCACAAGTCATACGAAAATTTGAAAAAAAGAAAAAAAAAAACATAGTTATTTTTGTTTTTGAGTTATGCTAAGAATCCAAATACTTCCTTTAAGAAAAAAGATGAAAACCATTGTTAAGAAATTGTGAGAAAATAGACATAATTTTCAAAAACCAAATGGTTATCAAACGGAACCTAATCAATTGGTGATATCTCGTAGCCTAAGTTGATGAGTGTTGTTGCTCTTAGGTGGCAGAAGCTGCTCTTGTAGAGATAACATTTGAGGCCAATACTCGAGACTACACAAAGATTATTCATTACCATGGGAAGCGAAACCAACTCGAGGATGCTGAAAAAATTCTCTTAAGGATGAGAGAAAGGGGTTTTGCTTGTGATCAGATAACATTGACCACAATGATCCACATATATAGCAAGGCTGACAAACTTAATCTTGCCAAACGAACTTTTGAAGAGCTCAAACTGCTCGAGCAACCATTGGATAAAAGATCGTACGGTGCAATGATTATGGCATATGTCAGGGCCGGGATGCCCGAGGAAGGAGAAAATATTCTGAAAGAAATGGATGCGAAAGATATTAATGCAGGAAGTGAAGTTTACAAGGCTTTGTTAAGAGCATATTCCATGGCTGGCAATGCTGAAGGAGCCCAAAGGGTATTCGATGCAATTCAATTGGCTGCTATTCCTCCTGATGAAAAGTTATGTGGTCTGCTGATCAATGCGTATCTGATGGCCGGTCAAAGCCAAAAGGCGCAAATTGCTTTCGACAATATGAGGAGGGCAGGTATTGAACCTAGTGACAAATGCATAGCTTTGGTATTAAGTGCATATGAAAAGGAAAACAGGCTAAACGCAGCATTGGAACTTCTAATAGATTTAGAGAAGGATAACCTCATGGTTGGGAAGGAAGCTTCAGAAATATTAGCAGCTTGGCTTAAAAGACTTGGGGTGGTAGAAGAGGTTGAACTTGTCTTGAGGGAATACACTGTGAAAGAAGCAAGCGGATAA

mRNA sequence

ATGATGCGAACCTCCACCAGTAACATTCTCCATCAACTTCATCCCAAACAGCCGCTAGTTAATGGAAATCCTGGGAGTTCGTATTCTTGTTACTGGAGAGGCTCAATTGCTCAAACATTCGGAGTCTTAAGATCTCGCCGAAGATGCTCTCAATTGGCTACTGTTGCTGCCATTGTTGAGGAATTTCACAAATTAGAGAGTGAAAGAGAGAAGCCAAGGTTTCGATGGGTCGAGGTGGGCTCTGATATTACTGAAATGCAGAAGAAAGCTATATCTCAGCTTCCTGCTAAGATGACTAAAAGATGTAAGGCTCTGATGAAACAACTTATATGTTTTTCGCCTCAGAAGGGTAATTTATCAGATATGTTGGCGGCTTGGGTGAGGATTATGAAGCCTGAAAGAGCAGATTGGCTTTCAGTTCTTAAGCATATGAGGATCTCGAATCATCCTCTTTACATCGAGGTGGCAGAAGCTGCTCTTGTAGAGATAACATTTGAGGCCAATACTCGAGACTACACAAAGATTATTCATTACCATGGGAAGCGAAACCAACTCGAGGATGCTGAAAAAATTCTCTTAAGGATGAGAGAAAGGGGTTTTGCTTGTGATCAGATAACATTGACCACAATGATCCACATATATAGCAAGGCTGACAAACTTAATCTTGCCAAACGAACTTTTGAAGAGCTCAAACTGCTCGAGCAACCATTGGATAAAAGATCGTACGGTGCAATGATTATGGCATATGTCAGGGCCGGGATGCCCGAGGAAGGAGAAAATATTCTGAAAGAAATGGATGCGAAAGATATTAATGCAGGAAGTGAAGTTTACAAGGCTTTGTTAAGAGCATATTCCATGGCTGGCAATGCTGAAGGAGCCCAAAGGGTATTCGATGCAATTCAATTGGCTGCTATTCCTCCTGATGAAAAGTTATGTGGTCTGCTGATCAATGCGTATCTGATGGCCGGTCAAAGCCAAAAGGCGCAAATTGCTTTCGACAATATGAGGAGGGCAGGTATTGAACCTAGTGACAAATGCATAGCTTTGGTATTAAGTGCATATGAAAAGGAAAACAGGCTAAACGCAGCATTGGAACTTCTAATAGATTTAGAGAAGGATAACCTCATGGTTGGGAAGGAAGCTTCAGAAATATTAGCAGCTTGGCTTAAAAGACTTGGGGTGGTAGAAGAGGTTGAACTTGTCTTGAGGGAATACACTGTGAAAGAAGCAAGCGGATAA

Coding sequence (CDS)

ATGATGCGAACCTCCACCAGTAACATTCTCCATCAACTTCATCCCAAACAGCCGCTAGTTAATGGAAATCCTGGGAGTTCGTATTCTTGTTACTGGAGAGGCTCAATTGCTCAAACATTCGGAGTCTTAAGATCTCGCCGAAGATGCTCTCAATTGGCTACTGTTGCTGCCATTGTTGAGGAATTTCACAAATTAGAGAGTGAAAGAGAGAAGCCAAGGTTTCGATGGGTCGAGGTGGGCTCTGATATTACTGAAATGCAGAAGAAAGCTATATCTCAGCTTCCTGCTAAGATGACTAAAAGATGTAAGGCTCTGATGAAACAACTTATATGTTTTTCGCCTCAGAAGGGTAATTTATCAGATATGTTGGCGGCTTGGGTGAGGATTATGAAGCCTGAAAGAGCAGATTGGCTTTCAGTTCTTAAGCATATGAGGATCTCGAATCATCCTCTTTACATCGAGGTGGCAGAAGCTGCTCTTGTAGAGATAACATTTGAGGCCAATACTCGAGACTACACAAAGATTATTCATTACCATGGGAAGCGAAACCAACTCGAGGATGCTGAAAAAATTCTCTTAAGGATGAGAGAAAGGGGTTTTGCTTGTGATCAGATAACATTGACCACAATGATCCACATATATAGCAAGGCTGACAAACTTAATCTTGCCAAACGAACTTTTGAAGAGCTCAAACTGCTCGAGCAACCATTGGATAAAAGATCGTACGGTGCAATGATTATGGCATATGTCAGGGCCGGGATGCCCGAGGAAGGAGAAAATATTCTGAAAGAAATGGATGCGAAAGATATTAATGCAGGAAGTGAAGTTTACAAGGCTTTGTTAAGAGCATATTCCATGGCTGGCAATGCTGAAGGAGCCCAAAGGGTATTCGATGCAATTCAATTGGCTGCTATTCCTCCTGATGAAAAGTTATGTGGTCTGCTGATCAATGCGTATCTGATGGCCGGTCAAAGCCAAAAGGCGCAAATTGCTTTCGACAATATGAGGAGGGCAGGTATTGAACCTAGTGACAAATGCATAGCTTTGGTATTAAGTGCATATGAAAAGGAAAACAGGCTAAACGCAGCATTGGAACTTCTAATAGATTTAGAGAAGGATAACCTCATGGTTGGGAAGGAAGCTTCAGAAATATTAGCAGCTTGGCTTAAAAGACTTGGGGTGGTAGAAGAGGTTGAACTTGTCTTGAGGGAATACACTGTGAAAGAAGCAAGCGGATAA

Protein sequence

MMRTSTSNILHQLHPKQPLVNGNPGSSYSCYWRGSIAQTFGVLRSRRRCSQLATVAAIVEEFHKLESEREKPRFRWVEVGSDITEMQKKAISQLPAKMTKRCKALMKQLICFSPQKGNLSDMLAAWVRIMKPERADWLSVLKHMRISNHPLYIEVAEAALVEITFEANTRDYTKIIHYHGKRNQLEDAEKILLRMRERGFACDQITLTTMIHIYSKADKLNLAKRTFEELKLLEQPLDKRSYGAMIMAYVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAYSMAGNAEGAQRVFDAIQLAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKCIALVLSAYEKENRLNAALELLIDLEKDNLMVGKEASEILAAWLKRLGVVEEVELVLREYTVKEASG

Homology

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BLAST of Cla021304 vs. Swiss-Prot
Match: PPR1_ARATH (Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana GN=At1g01970 PE=2 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 6.0e-126
Identity = 216/364 (59.34%), Postives = 289/364 (79.40%), Query Frame = 1


Query: 47  RRCSQLATVAAIVEEFHKLESEREKPRFRWVEVGSDITEMQKKAISQLPAKMTKRCKALM 106
           R CS     +  + E  + E   +   F W +VG ++TE Q +AI+++P KM+KRC+ALM
Sbjct: 43  RLCSCKCNASLAIGEVVEKEDAEQSRSFNWADVGLNLTEEQDEAITRIPIKMSKRCQALM 102

Query: 107 KQLICFSPQKGNLSDMLAAWVRIMKPERADWLSVLKHMRISNHPLYIEVAEAALVEITFE 166
           +Q+ICFSP+KG+  D+L AW+R M P RADWLS+LK ++  + P YI+VAE +L++ +FE
Sbjct: 103 RQIICFSPEKGSFCDLLGAWLRRMNPIRADWLSILKELKNLDSPFYIKVAEFSLLQDSFE 162

Query: 167 ANTRDYTKIIHYHGKRNQLEDAEKILLRMRERGFACDQITLTTMIHIYSKADKLNLAKRT 226
           AN RDYTKIIHY+GK NQ+EDAE+ LL M+ RGF  DQ+TLT M+ +YSKA    LA+ T
Sbjct: 163 ANARDYTKIIHYYGKLNQVEDAERTLLSMKNRGFLIDQVTLTAMVQLYSKAGCHKLAEET 222

Query: 227 FEELKLLEQPLDKRSYGAMIMAYVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAYSM 286
           F E+KLL +PLD RSYG+MIMAY+RAG+PE+GE++L+EMD+++I AG EVYKALLR YSM
Sbjct: 223 FNEIKLLGEPLDYRSYGSMIMAYIRAGVPEKGESLLREMDSQEICAGREVYKALLRDYSM 282

Query: 287 AGNAEGAQRVFDAIQLAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKC 346
            G+AEGA+RVFDA+Q+A I PD KLCGLLINAY ++GQSQ A++AF+NMR+AGI+ +DKC
Sbjct: 283 GGDAEGAKRVFDAVQIAGITPDVKLCGLLINAYSVSGQSQNARLAFENMRKAGIKATDKC 342

Query: 347 IALVLSAYEKENRLNAALELLIDLEKDNLMVGKEASEILAAWLKRLGVVEEVELVLREYT 406
           +ALVL+AYEKE +LN AL  L++LEKD++M+GKEAS +LA W K+LGVVEEVEL+LRE++
Sbjct: 343 VALVLAAYEKEEKLNEALGFLVELEKDSIMLGKEASAVLAQWFKKLGVVEEVELLLREFS 402

Query: 407 VKEA 411
             ++
Sbjct: 403 SSQS 406

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BLAST of Cla021304 vs. Swiss-Prot
Match: PPR51_ARATH (Pentatricopeptide repeat-containing protein At1g19525 OS=Arabidopsis thaliana GN=At1g19525 PE=2 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 5.1e-40
Identity = 89/209 (42.58%), Postives = 124/209 (59.33%), Query Frame = 1


Query: 195 MRERGFACDQITLTTMIHIYSKADKLNLAKRTFEELKLLEQPLDKRSYGAMIMAYVRAGM 254
           M + G   D +T T ++H+YSK+     A   FE LK      D++ Y AMI+ YV AG 
Sbjct: 1   MSQNGIFPDILTATALVHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGK 60

Query: 255 PEEGENILKEMDAKDINAGSEVYKALLRAYSMAGNAEGAQRVFDAIQLAAIPP-DEKLCG 314
           P+ GE ++KEM AK++ A  EVY ALLRAY+  G+A GA  +  ++Q A+  P   +   
Sbjct: 61  PKLGERLMKEMQAKELKASEEVYMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYS 120

Query: 315 LLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKCIALVLSAYEKENRLNAALELLIDLEKD 374
           L + AY  AGQ  KA+  FD MR+ G +P DKCIA ++ AY+ EN L+ AL LL+ LEKD
Sbjct: 121 LFVEAYGKAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKD 180

Query: 375 NLMVGKEASEILAAWLKRLGVVEEVELVL 403
            + +G     +L  W+  LG++EE E +L
Sbjct: 181 GIEIGVITYTVLVDWMANLGLIEEAEQLL 209

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BLAST of Cla021304 vs. Swiss-Prot
Match: PP186_ARATH (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-18
Identity = 66/259 (25.48%), Postives = 118/259 (45.56%), Query Frame = 1


Query: 153 IEVAEAALVEITFEANTRDYTKIIHYHG-------KRNQLEDAEKILLRMRERGFACDQI 212
           IE AE  LVE+     +     +  Y+        ++   E+A  +  RM+         
Sbjct: 206 IERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTE 265

Query: 213 TLTTMIHIYSKADKLNLAKRTFEELKLLEQPLDKRSYGAMIMAYVRAGMPEEGENILKEM 272
           T   MI++Y KA K  ++ + + E++  +   +  +Y A++ A+ R G+ E+ E I +++
Sbjct: 266 TYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQL 325

Query: 273 DAKDINAGSEVYKALLRAYSMAGNAEGAQRVFDAIQLAAIPPDEKLCGLLINAYLMAGQS 332
               +     VY AL+ +YS AG   GA  +F  +Q     PD     ++++AY  AG  
Sbjct: 326 QEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLH 385

Query: 333 QKAQIAFDNMRRAGIEPSDKCIALVLSAYEKENRLNAALELLIDLEKDNLMVGKEASEIL 392
             A+  F+ M+R GI P+ K   L+LSAY K   +     ++ ++ ++ +         +
Sbjct: 386 SDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSM 445

Query: 393 AAWLKRLGVVEEVELVLRE 405
                RLG   ++E +L E
Sbjct: 446 LNLYGRLGQFTKMEKILAE 464

HSP 2 Score: 32.3 bits (72), Expect = 1.5e+01
Identity = 30/129 (23.26%), Postives = 57/129 (44.19%), Query Frame = 1


Query: 277 YKALLRAYSMAGNAEGAQRVFDAIQLAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMR 336
           +  L+ AY      + A+ ++  +  +   P E    LLI AY MAG  ++A++    M+
Sbjct: 158 FNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQ 217

Query: 337 RAGIEPSDKCIAL-VLSAY-----EKENRLNAALELLIDLEKD---------NLMVG--K 389
              + P  K I + V +AY     +++     A+++   +++D         NLM+    
Sbjct: 218 NHHVSP--KTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYG 277

[Close]

BLAST of Cla021304 vs. Swiss-Prot
Match: PP163_ARATH (Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.1e-16
Identity = 59/214 (27.57%), Postives = 100/214 (46.73%), Query Frame = 1


Query: 191 ILLRMRERGFACDQITLTTMIHIYSKADKLNLAKRTFEELKLLEQPLDKRSYGAMIMAYV 250
           +L  MR +G   D+ T +T++   ++   L  AK  F ELK         +Y A++  + 
Sbjct: 268 VLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFG 327

Query: 251 RAGMPEEGENILKEMDAKDINAGSEVYKALLRAYSMAGNAEGAQRVFDAIQLAAIPPDEK 310
           +AG+  E  ++LKEM+     A S  Y  L+ AY  AG ++ A  V + +    + P+  
Sbjct: 328 KAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAI 387

Query: 311 LCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKCIALVLSAYEKENRLNAALELLIDL 370
               +I+AY  AG+  +A   F +M+ AG  P+      VLS   K++R N  +++L D+
Sbjct: 388 TYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDM 447

Query: 371 EKDNLMVGKEASEILAAWLKRLGVVEEVELVLRE 405
           + +     +     + A     G+ + V  V RE
Sbjct: 448 KSNGCSPNRATWNTMLALCGNKGMDKFVNRVFRE 481

HSP 2 Score: 65.1 bits (157), Expect = 2.1e-09
Identity = 46/208 (22.12%), Postives = 85/208 (40.87%), Query Frame = 1


Query: 168 NTRDYTKIIHYHGKRNQLEDAEKILLRMRERGFACDQITLTTMIHIYSKADKLNLAKRTF 227
           N   +  ++   G +   +   ++   M+  GF  D+ T  T+I  Y +      A + +
Sbjct: 455 NRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMY 514

Query: 228 EELKLLEQPLDKRSYGAMIMAYVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAYSMA 287
            E+          +Y A++ A  R G    GEN++ +M +K        Y  +L+ Y+  
Sbjct: 515 GEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKG 574

Query: 288 GNAEGAQRVFDAIQLAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKCI 347
           GN  G +R+ + I+   I P   L   L+ A         ++ AF   ++ G +P     
Sbjct: 575 GNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIF 634

Query: 348 ALVLSAYEKENRLNAALELLIDLEKDNL 376
             +LS + + N  + A  +L  + +D L
Sbjct: 635 NSMLSIFTRNNMYDQAEGILESIREDGL 662

HSP 3 Score: 58.9 bits (141), Expect = 1.5e-07
Identity = 46/221 (20.81%), Postives = 88/221 (39.82%), Query Frame = 1


Query: 189 EKILLRMRERGFACDQITLTTMIHIYSKADKLNLAKRTFEELKLLEQPLDKRSYGAMIMA 248
           E ++L         D   +   + I  +  + ++A +  +++ L E  LD R+Y  ++ A
Sbjct: 160 EWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHA 219

Query: 249 YVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAYSMAGNA-EGAQRVFDAIQLAAIPP 308
           Y R G  E+  ++ + M     +     Y  +L  +   G +      V D ++   +  
Sbjct: 220 YSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKF 279

Query: 309 DEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKCIALVLSAYEKENRLNAALELL 368
           DE  C  +++A    G  ++A+  F  ++  G EP       +L  + K      AL +L
Sbjct: 280 DEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVL 339

Query: 369 IDLEKDNLMVGKEASEILAAWLKRLGVVEEVELVLREYTVK 409
            ++E+++          L A   R G  +E   V+   T K
Sbjct: 340 KEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKK 380

[Close]

BLAST of Cla021304 vs. Swiss-Prot
Match: PP408_ARATH (Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.7e-16
Identity = 63/215 (29.30%), Postives = 100/215 (46.51%), Query Frame = 1


Query: 166 EANTRDYTKIIHYHGKRNQLEDAEKILLRMRERGFACDQITLTTMIHIYSKADKLNLAKR 225
           E N   Y  +I  +GK  + E A  ++  M+ RG   + IT +T+I I+ KA KL+ A  
Sbjct: 397 EQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAAT 456

Query: 226 TFEELKLLEQPLDKRSYGAMIMAYVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAYS 285
            F++L+     +D+  Y  MI+AY R G+    + +L E+   D N   E    +L   +
Sbjct: 457 LFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPD-NIPRETAITIL---A 516

Query: 286 MAGNAEGAQRVFDAIQLAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDK 345
            AG  E A  VF     +    D  + G +IN Y    +       F+ MR AG  P   
Sbjct: 517 KAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSN 576

Query: 346 CIALVLSAYEKENRLNAALELLIDLEKDNLMVGKE 381
            IA+VL+AY K+     A  +  +++++  +   E
Sbjct: 577 VIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDE 607

[Close]

BLAST of Cla021304 vs. TrEMBL
Match: A0A0A0L7L8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126080 PE=4 SV=1)

HSP 1 Score: 685.6 bits (1768), Expect = 3.6e-194
Identity = 352/410 (85.85%), Postives = 375/410 (91.46%), Query Frame = 1


Query: 2   MRTSTSNILHQLHPKQPLVNGNPGSSYSCYWRGSIAQTFGVLRSRRRCSQLATVAAIVEE 61
           M+ STSNIL+QLH   PLVNG   +SYS YWR SI     VL SRRRCSQ+AT  AIV+E
Sbjct: 1   MQISTSNILYQLH--LPLVNGTSNTSYSRYWRDSI-----VLSSRRRCSQMATATAIVDE 60

Query: 62  FHKLESEREKPRFRWVEVGSDITEMQKKAISQLPAKMTKRCKALMKQLICFSPQKGNLSD 121
            HKLESEREKPRFRWVEVG DITE QK+AISQLP KMTKRCKA+MKQ+ICFSPQKG LSD
Sbjct: 61  IHKLESEREKPRFRWVEVGYDITETQKQAISQLPPKMTKRCKAVMKQIICFSPQKGELSD 120

Query: 122 MLAAWVRIMKPERADWLSVLKHMRISNHPLYIEVAEAALVEITFEANTRDYTKIIHYHGK 181
           MLAAWVRIMKPERADWL VLKH+RI NHPLYI+VAEAAL EITFEANTRDYTKIIH++GK
Sbjct: 121 MLAAWVRIMKPERADWLLVLKHLRILNHPLYIQVAEAALEEITFEANTRDYTKIIHHYGK 180

Query: 182 RNQLEDAEKILLRMRERGFACDQITLTTMIHIYSKADKLNLAKRTFEELKLLEQPLDKRS 241
           +NQLEDAEK+LL MRERGF CDQITLTTMIHIYSKADKLNLAK+TFEELKLLEQPLDKRS
Sbjct: 181 QNQLEDAEKVLLSMRERGFVCDQITLTTMIHIYSKADKLNLAKQTFEELKLLEQPLDKRS 240

Query: 242 YGAMIMAYVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAYSMAGNAEGAQRVFDAIQ 301
           +GAMIMAYVRAG PEEGE ILKEMDAKDI AGSEVYKALLRAYSM GNAEGAQRVFDAIQ
Sbjct: 241 FGAMIMAYVRAGFPEEGEKILKEMDAKDIYAGSEVYKALLRAYSMVGNAEGAQRVFDAIQ 300

Query: 302 LAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKCIALVLSAYEKENRLN 361
           LAAI PDEKLCGLLINAYLMAGQS++AQIAFDNMRRAGIEPSDKCIAL LSAYEKENRLN
Sbjct: 301 LAAITPDEKLCGLLINAYLMAGQSREAQIAFDNMRRAGIEPSDKCIALALSAYEKENRLN 360

Query: 362 AALELLIDLEKDNLMVGKEASEILAAWLKRLGVVEEVELVLREYTVKEAS 412
           +ALELLIDLEKDN+MVGKEAS+ILAAWLKRLGVVEEVE+VLREYT KE +
Sbjct: 361 SALELLIDLEKDNVMVGKEASKILAAWLKRLGVVEEVEIVLREYTEKEVN 403

[Close]

BLAST of Cla021304 vs. TrEMBL
Match: W9QSE5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022440 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 1.5e-139
Identity = 249/357 (69.75%), Postives = 301/357 (84.31%), Query Frame = 1


Query: 55  VAAIVEEFHKLESEREKPRFRWVEVGSDITEMQKKAISQLPAKMTKRCKALMKQLICFSP 114
           VA  VEE  K E+   KP+F+WVEVG  ITE QK+AISQL  KMTKRC+ALMKQLICFS 
Sbjct: 44  VATSVEETEKAENGGGKPKFKWVEVGPGITESQKEAISQLSPKMTKRCRALMKQLICFSA 103

Query: 115 QKGNLSDMLAAWVRIMKPERADWLSVLKHMRISNHPLYIEVAEAALVEITFEANTRDYTK 174
            K +L+++LAAWVRIMKP+RADWL+++K ++I +HPLY +VAE AL+E +FEAN RDYTK
Sbjct: 104 HKASLNELLAAWVRIMKPQRADWLAIIKQLKIMDHPLYFQVAEVALLEESFEANIRDYTK 163

Query: 175 IIHYHGKRNQLEDAEKILLRMRERGFACDQITLTTMIHIYSKADKLNLAKRTFEELKLLE 234
           IIH +GK+N+LEDAEK LL M+ RGF  DQ+TLTT IH+YSKA  L LA+ TFEELKLL 
Sbjct: 164 IIHCYGKQNRLEDAEKTLLAMKSRGFIRDQVTLTTFIHMYSKAGNLKLAEETFEELKLLG 223

Query: 235 QPLDKRSYGAMIMAYVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAYSMAGNAEGAQ 294
           QPLDKRSYG+MIMAY+RAGMP++GENIL+EMD ++I AGSEVYKALLRAYSM G+AEGAQ
Sbjct: 224 QPLDKRSYGSMIMAYIRAGMPDQGENILREMDVEEIYAGSEVYKALLRAYSMTGDAEGAQ 283

Query: 295 RVFDAIQLAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKCIALVLSAY 354
           RVFDAIQLA I PD +LCGLLINAY+ +GQS+KA +AF NMRRAG+EPSDKC+ALVL AY
Sbjct: 284 RVFDAIQLAGILPDPRLCGLLINAYVESGQSEKACVAFGNMRRAGLEPSDKCVALVLCAY 343

Query: 355 EKENRLNAALELLIDLEKDNLMVGKEASEILAAWLKRLGVVEEVELVLREYTVKEAS 412
           EKEN+L  AL+ L++LE+  +MVG+EASE L  W ++LGVV+EV+LVLREY  K AS
Sbjct: 344 EKENKLQRALDFLMELERHGIMVGEEASETLVGWFRKLGVVKEVDLVLREYASKGAS 400

[Close]

BLAST of Cla021304 vs. TrEMBL
Match: A0A061DV02_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein, putative OS=Theobroma cacao GN=TCM_005495 PE=4 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 7.4e-139
Identity = 252/414 (60.87%), Postives = 321/414 (77.54%), Query Frame = 1


Query: 2   MRTSTSNILHQLHPKQPLVNGNPGSSYSCYWRGS---IAQTFGVLRSRRRCSQLATVAAI 61
           M TS  NI +  +   P +N      +   W      + Q  G   S  + +    +A+ 
Sbjct: 1   MVTSACNIPYCSYSTYPFINKTKKQIHPQSWGNRNPLLFQKKGAKFSSCKVNNQPEIASS 60

Query: 62  -VEEFHKLESEREKPRFRWVEVGSDITEMQKKAISQLPAKMTKRCKALMKQLICFSPQKG 121
            VEE  K E+  EK R++WVE+G DI E QK+AI++LP KMTKRCKALMKQ+ICF P+KG
Sbjct: 61  NVEEKGKPETNEEKRRYKWVEIGPDIAEEQKQAITELPFKMTKRCKALMKQIICFCPEKG 120

Query: 122 NLSDMLAAWVRIMKPERADWLSVLKHMRISNHPLYIEVAEAALVEITFEANTRDYTKIIH 181
           +L+D+LAAWV+IMKP RADWL VLK ++I  HPLY EVAE AL+E +FEAN RD+TKIIH
Sbjct: 121 SLADLLAAWVKIMKPRRADWLVVLKELKIMEHPLYFEVAELALLEESFEANIRDFTKIIH 180

Query: 182 YHGKRNQLEDAEKILLRMRERGFACDQITLTTMIHIYSKADKLNLAKRTFEELKLLEQPL 241
            +GK+ +L++AE IL+ M+ RGF CDQ+TLTTM+H+YSKA  L LA+ TFEE+KLL Q L
Sbjct: 181 GYGKQKRLQEAENILVAMKRRGFICDQVTLTTMVHMYSKAGNLKLAEETFEEIKLLGQQL 240

Query: 242 DKRSYGAMIMAYVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAYSMAGNAEGAQRVF 301
           DKRSYG+MIMAY+R+G PE+GE +L+EMD+++I AGSEVYKALLRAYSM G+A GAQRVF
Sbjct: 241 DKRSYGSMIMAYIRSGTPEQGEALLREMDSQEIYAGSEVYKALLRAYSMLGDANGAQRVF 300

Query: 302 DAIQLAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKCIALVLSAYEKE 361
           D IQLA I PD ++CGLLINAY +AGQS KA IAF+NMRRAG+EPSDKC+ALV++AYEK+
Sbjct: 301 DTIQLAGISPDARMCGLLINAYQLAGQSDKAHIAFENMRRAGLEPSDKCVALVVAAYEKQ 360

Query: 362 NRLNAALELLIDLEKDNLMVGKEASEILAAWLKRLGVVEEVELVLREYTVKEAS 412
           N+LN AL+ L++LE+D ++VGKEAS ILA W K+LGVVE+VELVLRE+  KE +
Sbjct: 361 NKLNKALDFLMELERDGIVVGKEASGILAQWFKKLGVVEQVELVLREFAAKETN 414

[Close]

BLAST of Cla021304 vs. TrEMBL
Match: A0A0D2S0I3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G161000 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 1.5e-136
Identity = 260/419 (62.05%), Postives = 314/419 (74.94%), Query Frame = 1


Query: 1   MMRTSTSNILH-----------QLHPKQPLVNGNPGSSYSCYWRGSIAQTFGVLRSRRRC 60
           MM TS SNI H           Q+HP Q   NGNP  S     + S   TF         
Sbjct: 1   MMVTSASNIPHCSYSPFPIINKQIHP-QSWGNGNPSLSLKQAMKPSSC-TFS------NE 60

Query: 61  SQLATVAAIVEEFHKLESEREKPRFRWVEVGSDITEMQKKAISQLPAKMTKRCKALMKQL 120
            Q++ + A            EK RF+WVE+G  ITE Q++AI +LP KMTKRCKALMKQ+
Sbjct: 61  PQISFIDA-----------EEKRRFKWVEIGPGITEEQRQAIDKLPFKMTKRCKALMKQI 120

Query: 121 ICFSPQKGNLSDMLAAWVRIMKPERADWLSVLKHMRISNHPLYIEVAEAALVEITFEANT 180
           ICF+P+KG+L D+L AWV +MKP RADWL VLK ++I  HPLY +VAE AL+E TFEAN 
Sbjct: 121 ICFNPEKGSLEDLLGAWVNVMKPRRADWLVVLKELKIMEHPLYFQVAEIALLEETFEANI 180

Query: 181 RDYTKIIHYHGKRNQLEDAEKILLRMRERGFACDQITLTTMIHIYSKADKLNLAKRTFEE 240
           RDYTKIIH +GK+N+L +AE IL  M+ RGF CDQ+TLTTM+H+YSKA  L LA+ TFEE
Sbjct: 181 RDYTKIIHGYGKQNRLREAENILDAMKRRGFICDQVTLTTMVHMYSKAGNLKLAEDTFEE 240

Query: 241 LKLLEQPLDKRSYGAMIMAYVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAYSMAGN 300
           +KLL Q LDKRSYGAMIMAY+RAGMPE+GE +LKEMD  +I AGSEVYKALLRAYS  G+
Sbjct: 241 IKLLGQQLDKRSYGAMIMAYIRAGMPEQGEGLLKEMDNLEIYAGSEVYKALLRAYSTNGD 300

Query: 301 AEGAQRVFDAIQLAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKCIAL 360
            +GAQRVF AIQLA I PD KLCGLLINAY +AGQS++A++AF+NMRRAG+EPSDKC+AL
Sbjct: 301 TDGAQRVFGAIQLAGISPDAKLCGLLINAYQVAGQSEEARVAFENMRRAGLEPSDKCVAL 360

Query: 361 VLSAYEKENRLNAALELLIDLEKDNLMVGKEASEILAAWLKRLGVVEEVELVLREYTVK 409
           VL+AYEK+N+LN ALE L+DLE+D ++VGKEAS ILA W K+LGVVE+VE VLRE+  K
Sbjct: 361 VLAAYEKQNKLNKALEFLMDLERDGIVVGKEASSILAQWFKKLGVVEQVEQVLREFAAK 400

[Close]

BLAST of Cla021304 vs. TrEMBL
Match: B9IC06_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s06610g PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 3.4e-136
Identity = 253/406 (62.32%), Postives = 313/406 (77.09%), Query Frame = 1


Query: 2   MRTSTSNILHQLHPKQPLVNGNPGSSYSCYWRGSIAQTFGVLRSRRRCSQLATVAAIVEE 61
           M T   NIL    P  PL +    +S   +   S+ Q    L S +  SQ+  V A +  
Sbjct: 1   MATYVINILPFSSPTCPLHSEPKKTSNLHFLGNSLCQQPVTLTSCK--SQIQPVLAAINV 60

Query: 62  FHKLESE--REKPRFRWVEVGSDITEMQKKAISQLPAKMTKRCKALMKQLICFSPQKGNL 121
             K+E E  +EKP+FRWVE+G +I E QK+AISQLP KMTKRCKALM+Q+ICF+ +KG+L
Sbjct: 61  EEKVEGEIGKEKPKFRWVEIGPNIPEEQKQAISQLPFKMTKRCKALMRQIICFNDKKGSL 120

Query: 122 SDMLAAWVRIMKPERADWLSVLKHMRISNHPLYIEVAEAALVEITFEANTRDYTKIIHYH 181
             +L+AWV+IMKP R DWLS+LK +    HPLY+EV E AL+E +FEAN RDYTKIIH++
Sbjct: 121 RGLLSAWVKIMKPRRKDWLSILKELNKMEHPLYLEVVEIALLEESFEANVRDYTKIIHFY 180

Query: 182 GKRNQLEDAEKILLRMRERGFACDQITLTTMIHIYSKADKLNLAKRTFEELKLLEQPLDK 241
           G  NQLE+AE+  L M ERGF  DQ+TLT MIH+YSK   L LA+ TFEELKLL QPLD+
Sbjct: 181 GMNNQLEEAERTRLAMEERGFVSDQVTLTAMIHMYSKGGNLTLAEETFEELKLLGQPLDR 240

Query: 242 RSYGAMIMAYVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAYSMAGNAEGAQRVFDA 301
           RSYG+MIMAY+RAGMPE+GE IL+EMDA++I AGSEVYKALLRAYS+ G+A+GAQRVFDA
Sbjct: 241 RSYGSMIMAYIRAGMPEKGEMILREMDAQEIRAGSEVYKALLRAYSIIGDADGAQRVFDA 300

Query: 302 IQLAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKCIALVLSAYEKENR 361
           IQLA IPPD++ C +L+NAY MAGQSQ A   F+NM RAGIEP+D+C+ALVL+AYEKEN+
Sbjct: 301 IQLAGIPPDDRTCAVLLNAYGMAGQSQNAYATFENMWRAGIEPTDRCVALVLAAYEKENK 360

Query: 362 LNAALELLIDLEKDNLMVGKEASEILAAWLKRLGVVEEVELVLREY 406
           LN AL+ LI LE++ L++GKEASE+LA W  RLGVV+EVELVLREY
Sbjct: 361 LNQALDFLIGLEREKLIIGKEASEVLAEWFGRLGVVKEVELVLREY 404

[Close]

BLAST of Cla021304 vs. NCBI nr
Match: gi|659075451|ref|XP_008438151.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Cucumis melo])

HSP 1 Score: 687.6 bits (1773), Expect = 1.4e-194
Identity = 352/410 (85.85%), Postives = 378/410 (92.20%), Query Frame = 1


Query: 2   MRTSTSNILHQLHPKQPLVNGNPGSSYSCYWRGSIAQTFGVLRSRRRCSQLATVAAIVEE 61
           M  STSNIL+QLH   PLVNG   +S S YW+ SI     VL SRRRCSQ+ATV AIV+E
Sbjct: 1   MHISTSNILYQLH--LPLVNGTSNTSSSRYWKDSI-----VLNSRRRCSQMATVTAIVDE 60

Query: 62  FHKLESEREKPRFRWVEVGSDITEMQKKAISQLPAKMTKRCKALMKQLICFSPQKGNLSD 121
            HKLESEREKPRFRWVEVG +ITE QK+AISQLP KMTK+CKA+MKQ+ICFSPQKG LSD
Sbjct: 61  LHKLESEREKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSD 120

Query: 122 MLAAWVRIMKPERADWLSVLKHMRISNHPLYIEVAEAALVEITFEANTRDYTKIIHYHGK 181
           MLAAWVRIMKPERADWLSVLKH+RI NHPLYI+VAEAALVEITFEANTRDYTKIIH++GK
Sbjct: 121 MLAAWVRIMKPERADWLSVLKHLRILNHPLYIQVAEAALVEITFEANTRDYTKIIHHYGK 180

Query: 182 RNQLEDAEKILLRMRERGFACDQITLTTMIHIYSKADKLNLAKRTFEELKLLEQPLDKRS 241
           +NQLEDAEK+LL MRERGFACDQITLTTMIHIYSKADKL LAK+TFEELKLLEQ LDKRS
Sbjct: 181 QNQLEDAEKVLLTMRERGFACDQITLTTMIHIYSKADKLKLAKQTFEELKLLEQSLDKRS 240

Query: 242 YGAMIMAYVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAYSMAGNAEGAQRVFDAIQ 301
           YGAMIMAYVRAG+PEEGE ILKEMDAKDI AGSEVYKALLRAYSMAG+AEGAQRVFDAIQ
Sbjct: 241 YGAMIMAYVRAGLPEEGEKILKEMDAKDIYAGSEVYKALLRAYSMAGDAEGAQRVFDAIQ 300

Query: 302 LAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKCIALVLSAYEKENRLN 361
           LAAIPPDEKLCGLL+NAYLMAGQS+KAQIAFDNMRRAGIEPSDKCIAL LSAYEKENRLN
Sbjct: 301 LAAIPPDEKLCGLLMNAYLMAGQSRKAQIAFDNMRRAGIEPSDKCIALALSAYEKENRLN 360

Query: 362 AALELLIDLEKDNLMVGKEASEILAAWLKRLGVVEEVELVLREYTVKEAS 412
           AALELLIDLEKDN+MVGKEAS+ILAAWLKRLGVVEE+E+VLREYT KE +
Sbjct: 361 AALELLIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAKEVN 403

[Close]

BLAST of Cla021304 vs. NCBI nr
Match: gi|449433119|ref|XP_004134345.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Cucumis sativus])

HSP 1 Score: 685.6 bits (1768), Expect = 5.2e-194
Identity = 352/410 (85.85%), Postives = 375/410 (91.46%), Query Frame = 1


Query: 2   MRTSTSNILHQLHPKQPLVNGNPGSSYSCYWRGSIAQTFGVLRSRRRCSQLATVAAIVEE 61
           M+ STSNIL+QLH   PLVNG   +SYS YWR SI     VL SRRRCSQ+AT  AIV+E
Sbjct: 1   MQISTSNILYQLH--LPLVNGTSNTSYSRYWRDSI-----VLSSRRRCSQMATATAIVDE 60

Query: 62  FHKLESEREKPRFRWVEVGSDITEMQKKAISQLPAKMTKRCKALMKQLICFSPQKGNLSD 121
            HKLESEREKPRFRWVEVG DITE QK+AISQLP KMTKRCKA+MKQ+ICFSPQKG LSD
Sbjct: 61  IHKLESEREKPRFRWVEVGYDITETQKQAISQLPPKMTKRCKAVMKQIICFSPQKGELSD 120

Query: 122 MLAAWVRIMKPERADWLSVLKHMRISNHPLYIEVAEAALVEITFEANTRDYTKIIHYHGK 181
           MLAAWVRIMKPERADWL VLKH+RI NHPLYI+VAEAAL EITFEANTRDYTKIIH++GK
Sbjct: 121 MLAAWVRIMKPERADWLLVLKHLRILNHPLYIQVAEAALEEITFEANTRDYTKIIHHYGK 180

Query: 182 RNQLEDAEKILLRMRERGFACDQITLTTMIHIYSKADKLNLAKRTFEELKLLEQPLDKRS 241
           +NQLEDAEK+LL MRERGF CDQITLTTMIHIYSKADKLNLAK+TFEELKLLEQPLDKRS
Sbjct: 181 QNQLEDAEKVLLSMRERGFVCDQITLTTMIHIYSKADKLNLAKQTFEELKLLEQPLDKRS 240

Query: 242 YGAMIMAYVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAYSMAGNAEGAQRVFDAIQ 301
           +GAMIMAYVRAG PEEGE ILKEMDAKDI AGSEVYKALLRAYSM GNAEGAQRVFDAIQ
Sbjct: 241 FGAMIMAYVRAGFPEEGEKILKEMDAKDIYAGSEVYKALLRAYSMVGNAEGAQRVFDAIQ 300

Query: 302 LAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKCIALVLSAYEKENRLN 361
           LAAI PDEKLCGLLINAYLMAGQS++AQIAFDNMRRAGIEPSDKCIAL LSAYEKENRLN
Sbjct: 301 LAAITPDEKLCGLLINAYLMAGQSREAQIAFDNMRRAGIEPSDKCIALALSAYEKENRLN 360

Query: 362 AALELLIDLEKDNLMVGKEASEILAAWLKRLGVVEEVELVLREYTVKEAS 412
           +ALELLIDLEKDN+MVGKEAS+ILAAWLKRLGVVEEVE+VLREYT KE +
Sbjct: 361 SALELLIDLEKDNVMVGKEASKILAAWLKRLGVVEEVEIVLREYTEKEVN 403

[Close]

BLAST of Cla021304 vs. NCBI nr
Match: gi|703085829|ref|XP_010092845.1| (hypothetical protein L484_022440 [Morus notabilis])

HSP 1 Score: 504.2 bits (1297), Expect = 2.1e-139
Identity = 249/357 (69.75%), Postives = 301/357 (84.31%), Query Frame = 1


Query: 55  VAAIVEEFHKLESEREKPRFRWVEVGSDITEMQKKAISQLPAKMTKRCKALMKQLICFSP 114
           VA  VEE  K E+   KP+F+WVEVG  ITE QK+AISQL  KMTKRC+ALMKQLICFS 
Sbjct: 44  VATSVEETEKAENGGGKPKFKWVEVGPGITESQKEAISQLSPKMTKRCRALMKQLICFSA 103

Query: 115 QKGNLSDMLAAWVRIMKPERADWLSVLKHMRISNHPLYIEVAEAALVEITFEANTRDYTK 174
            K +L+++LAAWVRIMKP+RADWL+++K ++I +HPLY +VAE AL+E +FEAN RDYTK
Sbjct: 104 HKASLNELLAAWVRIMKPQRADWLAIIKQLKIMDHPLYFQVAEVALLEESFEANIRDYTK 163

Query: 175 IIHYHGKRNQLEDAEKILLRMRERGFACDQITLTTMIHIYSKADKLNLAKRTFEELKLLE 234
           IIH +GK+N+LEDAEK LL M+ RGF  DQ+TLTT IH+YSKA  L LA+ TFEELKLL 
Sbjct: 164 IIHCYGKQNRLEDAEKTLLAMKSRGFIRDQVTLTTFIHMYSKAGNLKLAEETFEELKLLG 223

Query: 235 QPLDKRSYGAMIMAYVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAYSMAGNAEGAQ 294
           QPLDKRSYG+MIMAY+RAGMP++GENIL+EMD ++I AGSEVYKALLRAYSM G+AEGAQ
Sbjct: 224 QPLDKRSYGSMIMAYIRAGMPDQGENILREMDVEEIYAGSEVYKALLRAYSMTGDAEGAQ 283

Query: 295 RVFDAIQLAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKCIALVLSAY 354
           RVFDAIQLA I PD +LCGLLINAY+ +GQS+KA +AF NMRRAG+EPSDKC+ALVL AY
Sbjct: 284 RVFDAIQLAGILPDPRLCGLLINAYVESGQSEKACVAFGNMRRAGLEPSDKCVALVLCAY 343

Query: 355 EKENRLNAALELLIDLEKDNLMVGKEASEILAAWLKRLGVVEEVELVLREYTVKEAS 412
           EKEN+L  AL+ L++LE+  +MVG+EASE L  W ++LGVV+EV+LVLREY  K AS
Sbjct: 344 EKENKLQRALDFLMELERHGIMVGEEASETLVGWFRKLGVVKEVDLVLREYASKGAS 400

[Close]

BLAST of Cla021304 vs. NCBI nr
Match: gi|590722924|ref|XP_007052035.1| (Tetratricopeptide repeat (TPR)-like superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 501.9 bits (1291), Expect = 1.1e-138
Identity = 252/414 (60.87%), Postives = 321/414 (77.54%), Query Frame = 1


Query: 2   MRTSTSNILHQLHPKQPLVNGNPGSSYSCYWRGS---IAQTFGVLRSRRRCSQLATVAAI 61
           M TS  NI +  +   P +N      +   W      + Q  G   S  + +    +A+ 
Sbjct: 1   MVTSACNIPYCSYSTYPFINKTKKQIHPQSWGNRNPLLFQKKGAKFSSCKVNNQPEIASS 60

Query: 62  -VEEFHKLESEREKPRFRWVEVGSDITEMQKKAISQLPAKMTKRCKALMKQLICFSPQKG 121
            VEE  K E+  EK R++WVE+G DI E QK+AI++LP KMTKRCKALMKQ+ICF P+KG
Sbjct: 61  NVEEKGKPETNEEKRRYKWVEIGPDIAEEQKQAITELPFKMTKRCKALMKQIICFCPEKG 120

Query: 122 NLSDMLAAWVRIMKPERADWLSVLKHMRISNHPLYIEVAEAALVEITFEANTRDYTKIIH 181
           +L+D+LAAWV+IMKP RADWL VLK ++I  HPLY EVAE AL+E +FEAN RD+TKIIH
Sbjct: 121 SLADLLAAWVKIMKPRRADWLVVLKELKIMEHPLYFEVAELALLEESFEANIRDFTKIIH 180

Query: 182 YHGKRNQLEDAEKILLRMRERGFACDQITLTTMIHIYSKADKLNLAKRTFEELKLLEQPL 241
            +GK+ +L++AE IL+ M+ RGF CDQ+TLTTM+H+YSKA  L LA+ TFEE+KLL Q L
Sbjct: 181 GYGKQKRLQEAENILVAMKRRGFICDQVTLTTMVHMYSKAGNLKLAEETFEEIKLLGQQL 240

Query: 242 DKRSYGAMIMAYVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAYSMAGNAEGAQRVF 301
           DKRSYG+MIMAY+R+G PE+GE +L+EMD+++I AGSEVYKALLRAYSM G+A GAQRVF
Sbjct: 241 DKRSYGSMIMAYIRSGTPEQGEALLREMDSQEIYAGSEVYKALLRAYSMLGDANGAQRVF 300

Query: 302 DAIQLAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSDKCIALVLSAYEKE 361
           D IQLA I PD ++CGLLINAY +AGQS KA IAF+NMRRAG+EPSDKC+ALV++AYEK+
Sbjct: 301 DTIQLAGISPDARMCGLLINAYQLAGQSDKAHIAFENMRRAGLEPSDKCVALVVAAYEKQ 360

Query: 362 NRLNAALELLIDLEKDNLMVGKEASEILAAWLKRLGVVEEVELVLREYTVKEAS 412
           N+LN AL+ L++LE+D ++VGKEAS ILA W K+LGVVE+VELVLRE+  KE +
Sbjct: 361 NKLNKALDFLMELERDGIVVGKEASGILAQWFKKLGVVEQVELVLREFAAKETN 414

[Close]

BLAST of Cla021304 vs. NCBI nr
Match: gi|1009168695|ref|XP_015902798.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like [Ziziphus jujuba])

HSP 1 Score: 496.9 bits (1278), Expect = 3.4e-137
Identity = 246/367 (67.03%), Postives = 301/367 (82.02%), Query Frame = 1


Query: 45  SRRRCSQLATVAAIVEEFHKLESEREKPRFRWVEVGSDITEMQKKAISQLPAKMTKRCKA 104
           SR+   Q A+    VEE  K E+E  KP F+WVE+G  ITE Q++AIS+L  K+TKRCKA
Sbjct: 54  SRKLHFQQASFTKKVEETAKSENEEGKPMFKWVEIGPHITEAQRQAISKLSPKLTKRCKA 113

Query: 105 LMKQLICFSPQKGNLSDMLAAWVRIMKPERADWLSVLKHMRISNHPLYIEVAEAALVEIT 164
           LM+QLICFSP K +LSD+LAAWVR MKP RADWL+VLK ++  +HP Y++VAE AL+E T
Sbjct: 114 LMRQLICFSPHKASLSDLLAAWVRTMKPRRADWLAVLKELKTMDHPFYLQVAELALLEET 173

Query: 165 FEANTRDYTKIIHYHGKRNQLEDAEKILLRMRERGFACDQITLTTMIHIYSKADKLNLAK 224
           FEAN RDYTKIIH +GK+N+L+DAEK+L  M+ RGF  DQ+TLT  I IYSKA KLNLA+
Sbjct: 174 FEANIRDYTKIIHGYGKQNRLKDAEKMLSAMKSRGFVLDQVTLTAFIDIYSKAGKLNLAE 233

Query: 225 RTFEELKLLEQPLDKRSYGAMIMAYVRAGMPEEGENILKEMDAKDINAGSEVYKALLRAY 284
            TFEELKLL QPLDKRSYG+MIMAY+RAGMP +GENILKEMDA++I AGSEVYKA+LR Y
Sbjct: 234 ETFEELKLLGQPLDKRSYGSMIMAYIRAGMPIKGENILKEMDAQEIYAGSEVYKAMLRLY 293

Query: 285 SMAGNAEGAQRVFDAIQLAAIPPDEKLCGLLINAYLMAGQSQKAQIAFDNMRRAGIEPSD 344
           SMAG+ EGAQRVFDAIQ A I PD ++C LLINAY ++GQS KA++AF+NMRRAG+EPSD
Sbjct: 294 SMAGDCEGAQRVFDAIQFAGISPDVRMCALLINAYGISGQSDKARLAFENMRRAGLEPSD 353

Query: 345 KCIALVLSAYEKENRLNAALELLIDLEKDNLMVGKEASEILAAWLKRLGVVEEVELVLRE 404
           KC+A++L AYEKEN L  ALE L+DLE+D ++VGKEASE L  W ++LGVV+EV+ +LRE
Sbjct: 354 KCVAVMLLAYEKENELQKALEFLMDLERDGILVGKEASETLVGWFRKLGVVKEVDTILRE 413

Query: 405 YTVKEAS 412
           Y  KEA+
Sbjct: 414 YPGKEAN 420

The following BLAST results are available for this feature:

BLAST of Cla021304 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPR1_ARATH	6.0e-126	59.34	Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana GN...	[more]
PPR51_ARATH	5.1e-40	42.58	Pentatricopeptide repeat-containing protein At1g19525 OS=Arabidopsis thaliana GN...	[more]
PP186_ARATH	1.9e-18	25.48	Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN...	[more]
PP163_ARATH	5.1e-16	27.57	Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidop...	[more]
PP408_ARATH	6.7e-16	29.30	Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidop...	[more]

BLAST of Cla021304 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7L8_CUCSA	3.6e-194	85.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126080 PE=4 SV=1	[more]
W9QSE5_9ROSA	1.5e-139	69.75	Uncharacterized protein OS=Morus notabilis GN=L484_022440 PE=4 SV=1	[more]
A0A061DV02_THECC	7.4e-139	60.87	Tetratricopeptide repeat (TPR)-like superfamily protein, putative OS=Theobroma c...	[more]
A0A0D2S0I3_GOSRA	1.5e-136	62.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G161000 PE=4 SV=1	[more]
B9IC06_POPTR	3.4e-136	62.32	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s06610g PE=4 SV=1	[more]

BLAST of Cla021304 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075451\|ref\|XP_008438151.1\|	1.4e-194	85.85	PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Cucumis melo]	[more]
gi\|449433119\|ref\|XP_004134345.1\|	5.2e-194	85.85	PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Cucumis sativu...	[more]
gi\|703085829\|ref\|XP_010092845.1\|	2.1e-139	69.75	hypothetical protein L484_022440 [Morus notabilis]	[more]
gi\|590722924\|ref\|XP_007052035.1\|	1.1e-138	60.87	Tetratricopeptide repeat (TPR)-like superfamily protein, putative [Theobroma cac...	[more]
gi\|1009168695\|ref\|XP_015902798.1\|	3.4e-137	67.03	PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like [Ziziphus ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021304	Cla021304.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 314..340 score: 0.08coord: 276..299 score: 0.15coord: 241..269 score: 2.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 172..214 score: 2.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 172..203 score: 1.5E-5coord: 241..270 score: 2.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 343..377 score: 6.127coord: 203..237 score: 7.75coord: 238..272 score: 10.348coord: 168..202 score: 9.197coord: 273..307 score: 8.616coord: 308..342 score: 9
None	No IPR available	unknown	Coil	Coil	coord: 178..198 scor
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 70..404 score: 4.5E
None	No IPR available	PANTHER	PTHR24015:SF457	SUBFAMILY NOT NAMED	coord: 70..404 score: 4.5E
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..30 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021304	Cla97C05G082700	Watermelon (97103) v2	wmwmbB206
Cla021304	Csa3G126080	Cucumber (Chinese Long) v2	cuwmB233
Cla021304	MELO3C006182	Melon (DHL92) v3.5.1	mewmB461
Cla021304	ClCG05G002180	Watermelon (Charleston Gray)	wcgwmB286
Cla021304	CSPI03G09500	Wild cucumber (PI 183967)	cpiwmB231
Cla021304	Cucsa.257710	Cucumber (Gy14) v1	cgywmB479
Cla021304	CmaCh14G019800	Cucurbita maxima (Rimu)	cmawmB242
Cla021304	CmoCh14G020420	Cucurbita moschata (Rifu)	cmowmB231
Cla021304	Lsi05G019650	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021304	Cp4.1LG03g17120	Cucurbita pepo (Zucchini)	cpewmB613
Cla021304	CsGy3G009570	Cucumber (Gy14) v2	cgybwmB217
Cla021304	MELO3C006182.2	Melon (DHL92) v3.6.1	medwmB447
Cla021304	Carg14830	Silver-seed gourd	carwmB0617
Cla021304	CsaV3_3G009620	Cucumber (Chinese Long) v3	cucwmB239
Cla021304	Bhi01G000192	Wax gourd	wgowmB214

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021304	Watermelon (97103) v2	wmwmbB191
Cla021304	Watermelon (97103) v2	wmwmbB214
Cla021304	Wax gourd	wgowmB070
Cla021304	Wax gourd	wgowmB066
Cla021304	Wax gourd	wgowmB203
Cla021304	Watermelon (97103) v1	wmwmB123
Cla021304	Watermelon (97103) v1	wmwmB137
Cla021304	Cucumber (Gy14) v1	cgywmB551
Cla021304	Cucumber (Gy14) v1	cgywmB663
Cla021304	Cucurbita maxima (Rimu)	cmawmB344
Cla021304	Cucurbita maxima (Rimu)	cmawmB798
Cla021304	Cucurbita maxima (Rimu)	cmawmB870
Cla021304	Cucurbita moschata (Rifu)	cmowmB340
Cla021304	Cucurbita moschata (Rifu)	cmowmB793
Cla021304	Cucurbita moschata (Rifu)	cmowmB857
Cla021304	Melon (DHL92) v3.5.1	mewmB098
Cla021304	Watermelon (Charleston Gray)	wcgwmB134
Cla021304	Watermelon (Charleston Gray)	wcgwmB327
Cla021304	Cucumber (Chinese Long) v2	cuwmB493
Cla021304	Cucurbita pepo (Zucchini)	cpewmB151
Cla021304	Cucurbita pepo (Zucchini)	cpewmB332
Cla021304	Cucurbita pepo (Zucchini)	cpewmB845
Cla021304	Bottle gourd (USVL1VR-Ls)	lsiwmB021
Cla021304	Bottle gourd (USVL1VR-Ls)	lsiwmB022
Cla021304	Cucumber (Gy14) v2	cgybwmB375
Cla021304	Cucumber (Gy14) v2	cgybwmB459
Cla021304	Melon (DHL92) v3.6.1	medwmB020
Cla021304	Melon (DHL92) v3.6.1	medwmB096
Cla021304	Silver-seed gourd	carwmB0218
Cla021304	Silver-seed gourd	carwmB0483
Cla021304	Silver-seed gourd	carwmB0921
Cla021304	Silver-seed gourd	carwmB0936
Cla021304	Silver-seed gourd	carwmB1076
Cla021304	Cucumber (Chinese Long) v3	cucwmB426
Cla021304	Cucumber (Chinese Long) v3	cucwmB517