MELO3C006182.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006182.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Pentatricopeptide repeat-containing protein At1g01970
Location	chr06 : 1558156 .. 1561732 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAAAAAGAAAAGTATTCCAACCCGAAGGGTTAGGGATTAATGTCTTCAATGTCAGCTTTCTTCCTTATCCTCTTTGCTTCAACACAACTTTCCAAATCTTTTCTTCAGAGTTTGCATTTTCATCTTGCAATTCTCTCTACCGCTTAATCGAATTGTAGAATTAGAACAAAACTCTTTCCTTTATCTTTTGATTTTTTTTCTTTTTCTCGTTGAGTACGATGCATATCTCCACCAGTAATATTCTCTATCAACTTCATCTTCCTCTGGTTAATGGAACTTCAAATACTTCGTCTTCTCGTTACTGGAAGGATTCAATAGTCTTGAACTCTCGCCGAAGATGCTCTCAAATGGCTACTGTTACCGCCATTGTTGATGAACTTCACAAATTAGAGAGTGAAAGAGAGAAACCGAGGTTTCGGTGGGTCGAGGTTGGATATAATATTACCGAAACGCAGAAGCAGGCTATATCTCAGCTTCCTCCTAAGATGACTAAAAAATGTAAGGCTGTGATGAAGCAAATTATATGTTTTTCACCTCAGAAGGGTGAGTTATCAGACATGTTGGCGGCTTGGGTGAGGATTATGAAGCCTGAAAGAGCCGACTGGCTTTCAGTTCTTAAGCATTTGAGGATTTTGAATCATCCTCTCTATATCCAGGTACGTTAAATCTCCTATAATTTCAAGAACAAGCTTAGTCCATCAACATTAAGTTTGTTTGTCTATAAATTTTAGAAATTAATTCGTCTACTGAAATCAATTCGAATTCTATGTTCATGAACCACTAAACTTTCGATTTTGTGTCTGTTAGATTCATGGATTCTAAAAACGTTAAAGCTCTGGATTAAATTTGTAATTTCGATTATTAGAGGAGATCAAATAATCACAAAGCTGATTAATTTTGTAAACTAGTCTACATCAACTTTTTTTTTCTTTTAAGATTACGTTAGATAGGGACCTCCTCCTCTGCCAGCCTGGTTAGCATATCTATTTAATTTCTCATCGTAAGTTCGACAGAATGGCACTTATGTCAAGGATGTTTAGAATGATTTCAAGACATTGGTGGAAATGGATTAGTTGAGATATACGTAAATTGGCTCAAAACACTCGTGGATAAAAGAAAAAGACATGGGTTCAACAAAATAGTTGCATTGACTCAGATTGGATACTGCATTTGAAAATTATATATGATTTTTCAATTATTGTAGGTAAATTCTAAAAGTTGGTTTTTGTTTTTTAATTTTGCTAAGAGTTCAAATGCCTCCTTAAGAAATGTAGTAACCATAGTAAAGAATTTGTAAGAAATACGATCATACTTCTCACAAGTTAAATGGATATCAAATGGGACCTAAGCAATTGCTGATATTTCATGGCTAAGTTAATGTGCCATTGCTCTTAGGTGGCAGAAGCTGCTCTTGTAGAGATAACATTTGAAGCAAATACTCGAGACTACACAAAGATTATTCATCATTATGGGAAGCAAAACCAACTCGAGGATGCTGAAAAGGTTCTCTTAACCATGAGAGAAAGGGGTTTTGCTTGTGATCAGATAACATTAACCACAATGATCCACATATATAGCAAGGCTGACAAACTTAAACTAGCCAAACAAACTTTCGAAGAGCTCAAACTACTCGAGCAATCGTTGGATAAAAGATCATATGGTGCAATGATTATGGCATATGTCAGGGCTGGGTTGCCCGAGGAAGGAGAAAAAATTCTGAAAGAAATGGATGCAAAAGATATTTATGCAGGAAGCGAAGTTTACAAGGCTTTGTTAAGAGCATACTCCATGGCAGGCGATGCTGAAGGAGCCCAAAGAGTATTCGATGCAATTCAATTGGCTGCTATTCCTCCTGATGAAAAGCTATGCGGTCTTTTGATGAATGCCTATCTGATGGCCGGTCAAAGCCGAAAGGCACAAATTGCTTTTGACAACATGAGGAGGGCAGGCATTGAACCTAGTGACAAATGCATAGCTTTGGCATTAAGTGCATATGAAAAGGAAAACAGGTTAAATGCAGCGTTGGAACTTCTAATAGATTTGGAGAAGGATAACGTTATGGTTGGGAAGGAAGCTTCACAAATATTAGCAGCTTGGCTTAAACGATTAGGGGTGGTGGAAGAGATTGAAATTGTGTTGAGAGAATACACTGCAAAAGAAGTGAACCGCTAAGGTACATACACGCCCTTGGTTGCGAAAAGTCTCTTTTCTTATTGAATTGATGTATAAAAGAACACAAATTTTCTGCTTCATTTCTTTTTCAAGGGTAGTGGTTGCATAATTTTCAAACTGAAAAAGTACACATGATAAGAATTTAACAAGCCCGTTATTGAAACTTTCAAGTTGACGTTTAATTAATTGATCAGCAGGAGAAACCATGAGATTAGCAGTCCAATCGGCCATTAAGATCGTTTAGGGACGTTTGGAAATAGCGAGGCACCAATGCGCTGCATCGAAGACAGTTGTTTTTGGACAACTTGTTGATCAATGCTGACCATGGATGGGAAATTGTTGCTTCCAATTTGGTACGACTCCAATGGAGACTGCAATTTTTCCTGTGAAGCTTGCTCGACAGGATCAAGAAGTAGAGAAAGATCTGATTCAGCCGGAAATGAAGGGCAATCTGATGGAAGGCTTACAATTGAGGATAGAGTTGGCTTCTTGACTAGAGCTGGTGGTTGTGCCTGAAGATGGGGTGCGGGTCTTGGAAGCTCAGATGTTGCTAGGTACCCTTGCAAATATGAGATCTCTATTTGCAACCTTGCAGCCTAAAAAAATGTATATCACTCATATTCTGGCATTTATATATTTATTTACAAATTATACGTGAAACTAAAATTGAAAACTTAACAACGAATACGTACTAGTCTGTTTCTCATATGAAACTGTAGATGATATATGATAATAAGTTTCAAGTGGATATTATAAAAGTAATTAACCTTCCATTTGATAATCGTTTGGTTTTTTTAAATTGTGCCAGTTTTCATCTTTTCTGAAGAAGCATTTGGATTTTCATAAGCTTGAACTTTTAGCAACCAAAAATCAGAAGTCAAATGTTTGTGGAATTATTTGTTTTTACCTGTTGTTGAAGGGCAAAAATATGAGCAACACAGCCGAGAACTGGCTCTCTGACTCGAGCTTGTGCCTCGTAACATATAGTTATAGCTGCGTCAAGCCGTTTATGTTCAGGAATATGTAGAAGCATCTTCGACACATTGCTTGCACCAAACACTTTGTGTACGGCTGCAAAATGAGTTGTACCTTGTTCTGAGTCAAAGTAGGGTGCAAATATACACTCTGGCGTACACTTCCTCCGCAGAAACTTGCACGCCCCACACGGTCCACCACTGCCGTTGCTGCCACCACCCTTGCCTTTTGTGCAACTTCCACTGCTCCGCCTCGAGCTCATCTCAACCTTTGCTTGCTTGAGTTCTTTCAGGAAAACTTAAGCAAAGATTACTGAAAGACAAAACAAATATATACACACATACATACATATATATGTGTGTGTGTGTGTGTGGAGCTGACTTTGAGGTTTGTGGATCACAAGGTATGTAATTCTTCTTTTCCTT

mRNA sequence

AAAAAGAAAAAGAAAAGTATTCCAACCCGAAGGGTTAGGGATTAATGTCTTCAATGTCAGCTTTCTTCCTTATCCTCTTTGCTTCAACACAACTTTCCAAATCTTTTCTTCAGAGTTTGCATTTTCATCTTGCAATTCTCTCTACCGCTTAATCGAATTGTAGAATTAGAACAAAACTCTTTCCTTTATCTTTTGATTTTTTTTCTTTTTCTCGTTGAGTACGATGCATATCTCCACCAGTAATATTCTCTATCAACTTCATCTTCCTCTGGTTAATGGAACTTCAAATACTTCGTCTTCTCGTTACTGGAAGGATTCAATAGTCTTGAACTCTCGCCGAAGATGCTCTCAAATGGCTACTGTTACCGCCATTGTTGATGAACTTCACAAATTAGAGAGTGAAAGAGAGAAACCGAGGTTTCGGTGGGTCGAGGTTGGATATAATATTACCGAAACGCAGAAGCAGGCTATATCTCAGCTTCCTCCTAAGATGACTAAAAAATGTAAGGCTGTGATGAAGCAAATTATATGTTTTTCACCTCAGAAGGGTGAGTTATCAGACATGTTGGCGGCTTGGGTGAGGATTATGAAGCCTGAAAGAGCCGACTGGCTTTCAGTTCTTAAGCATTTGAGGATTTTGAATCATCCTCTCTATATCCAGATAGGGACCTCCTCCTCTGCCAGCCTGGTGGCAGAAGCTGCTCTTGTAGAGATAACATTTGAAGCAAATACTCGAGACTACACAAAGATTATTCATCATTATGGGAAGCAAAACCAACTCGAGGATGCTGAAAAGGTTCTCTTAACCATGAGAGAAAGGGGTTTTGCTTGTGATCAGATAACATTAACCACAATGATCCACATATATAGCAAGGCTGACAAACTTAAACTAGCCAAACAAACTTTCGAAGAGCTCAAACTACTCGAGCAATCGTTGGATAAAAGATCATATGGTGCAATGATTATGGCATATGTCAGGGCTGGGTTGCCCGAGGAAGGAGAAAAAATTCTGAAAGAAATGGATGCAAAAGATATTTATGCAGGAAGCGAAGTTTACAAGGCTTTGTTAAGAGCATACTCCATGGCAGGCGATGCTGAAGGAGCCCAAAGAGTATTCGATGCAATTCAATTGGCTGCTATTCCTCCTGATGAAAAGCTATGCGGTCTTTTGATGAATGCCTATCTGATGGCCGGTCAAAGCCGAAAGGCACAAATTGCTTTTGACAACATGAGGAGGGCAGGCATTGAACCTAGTGACAAATGCATAGCTTTGGCATTAAGTGCATATGAAAAGGAAAACAGGTTAAATGCAGCGTTGGAACTTCTAATAGATTTGGAGAAGGATAACGTTATGGTTGGGAAGGAAGCTTCACAAATATTAGCAGCTTGGCTTAAACGATTAGGGGTGGTGGAAGAGATTGAAATTGTGTTGAGAGAATACACTGCAAAAGAAGTGAACCGCTAAGCAGGAGAAACCATGAGATTAGCAGTCCAATCGGCCATTAAGATCGTTTAGGGACGTTTGGAAATAGCGAGGCACCAATGCGCTGCATCGAAGACAGTTGTTTTTGGACAACTTGTTGATCAATGCTGACCATGGATGGGAAATTGTTGCTTCCAATTTGGTACGACTCCAATGGAGACTGCAATTTTTCCTGTGAAGCTTGCTCGACAGGATCAAGAAGTAGAGAAAGATCTGATTCAGCCGGAAATGAAGGGCAATCTGATGGAAGGCTTACAATTGAGGATAGAGTTGGCTTCTTGACTAGAGCTGGTGGTTGTGCCTGAAGATGGGGTGCGGGTCTTGGAAGCTCAGATGTTGCTAGGTACCCTTGCAAATATGAGATCTCTATTTGCAACCTTGCAGCCTAAAAAAATGTATATCACTCATATTCTGGCATTTATATATTTATTTACAAATTATACGTGAAACTAAAATTGAAAACTTAACAACGAATACGTACTAGTCTGTTTCTCATATGAAACTGTAGATGATATATGATAATAAGTTTCAAGTGGATATTATAAAAGTAATTAACCTTCCATTTGATAATCGTTTGGTTTTTTTAAATTGTGCCAGTTTTCATCTTTTCTGAAGAAGCATTTGGATTTTCATAAGCTTGAACTTTTAGCAACCAAAAATCAGAAGTCAAATGTTTGTGGAATTATTTGTTTTTACCTGTTGTTGAAGGGCAAAAATATGAGCAACACAGCCGAGAACTGGCTCTCTGACTCGAGCTTGTGCCTCGTAACATATAGTTATAGCTGCGTCAAGCCGTTTATGTTCAGGAATATGTAGAAGCATCTTCGACACATTGCTTGCACCAAACACTTTGTGTACGGCTGCAAAATGAGTTGTACCTTGTTCTGAGTCAAAGTAGGGTGCAAATATACACTCTGGCGTACACTTCCTCCGCAGAAACTTGCACGCCCCACACGGTCCACCACTGCCGTTGCTGCCACCACCCTTGCCTTTTGTGCAACTTCCACTGCTCCGCCTCGAGCTCATCTCAACCTTTGCTTGCTTGAGTTCTTTCAGGAAAACTTAAGCAAAGATTACTGAAAGACAAAACAAATATATACACACATACATACATATATATGTGTGTGTGTGTGTGTGGAGCTGACTTTGAGGTTTGTGGATCACAAGGTATGTAATTCTTCTTTTCCTT

Coding sequence (CDS)

ATGCATATCTCCACCAGTAATATTCTCTATCAACTTCATCTTCCTCTGGTTAATGGAACTTCAAATACTTCGTCTTCTCGTTACTGGAAGGATTCAATAGTCTTGAACTCTCGCCGAAGATGCTCTCAAATGGCTACTGTTACCGCCATTGTTGATGAACTTCACAAATTAGAGAGTGAAAGAGAGAAACCGAGGTTTCGGTGGGTCGAGGTTGGATATAATATTACCGAAACGCAGAAGCAGGCTATATCTCAGCTTCCTCCTAAGATGACTAAAAAATGTAAGGCTGTGATGAAGCAAATTATATGTTTTTCACCTCAGAAGGGTGAGTTATCAGACATGTTGGCGGCTTGGGTGAGGATTATGAAGCCTGAAAGAGCCGACTGGCTTTCAGTTCTTAAGCATTTGAGGATTTTGAATCATCCTCTCTATATCCAGATAGGGACCTCCTCCTCTGCCAGCCTGGTGGCAGAAGCTGCTCTTGTAGAGATAACATTTGAAGCAAATACTCGAGACTACACAAAGATTATTCATCATTATGGGAAGCAAAACCAACTCGAGGATGCTGAAAAGGTTCTCTTAACCATGAGAGAAAGGGGTTTTGCTTGTGATCAGATAACATTAACCACAATGATCCACATATATAGCAAGGCTGACAAACTTAAACTAGCCAAACAAACTTTCGAAGAGCTCAAACTACTCGAGCAATCGTTGGATAAAAGATCATATGGTGCAATGATTATGGCATATGTCAGGGCTGGGTTGCCCGAGGAAGGAGAAAAAATTCTGAAAGAAATGGATGCAAAAGATATTTATGCAGGAAGCGAAGTTTACAAGGCTTTGTTAAGAGCATACTCCATGGCAGGCGATGCTGAAGGAGCCCAAAGAGTATTCGATGCAATTCAATTGGCTGCTATTCCTCCTGATGAAAAGCTATGCGGTCTTTTGATGAATGCCTATCTGATGGCCGGTCAAAGCCGAAAGGCACAAATTGCTTTTGACAACATGAGGAGGGCAGGCATTGAACCTAGTGACAAATGCATAGCTTTGGCATTAAGTGCATATGAAAAGGAAAACAGGTTAAATGCAGCGTTGGAACTTCTAATAGATTTGGAGAAGGATAACGTTATGGTTGGGAAGGAAGCTTCACAAATATTAGCAGCTTGGCTTAAACGATTAGGGGTGGTGGAAGAGATTGAAATTGTGTTGAGAGAATACACTGCAAAAGAAGTGAACCGCTAA

Protein sequence

MHISTSNILYQLHLPLVNGTSNTSSSRYWKDSIVLNSRRRCSQMATVTAIVDELHKLESEREKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSDMLAAWVRIMKPERADWLSVLKHLRILNHPLYIQIGTSSSASLVAEAALVEITFEANTRDYTKIIHHYGKQNQLEDAEKVLLTMRERGFACDQITLTTMIHIYSKADKLKLAKQTFEELKLLEQSLDKRSYGAMIMAYVRAGLPEEGEKILKEMDAKDIYAGSEVYKALLRAYSMAGDAEGAQRVFDAIQLAAIPPDEKLCGLLMNAYLMAGQSRKAQIAFDNMRRAGIEPSDKCIALALSAYEKENRLNAALELLIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAKEVNR

Homology

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BLAST of MELO3C006182.2 vs. NCBI nr
Match: XP_008438151.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Cucumis melo] >XP_008438152.1 PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Cucumis melo])

HSP 1 Score: 414.8 bits (1065), Expect = 3.3e-112
Identity = 401/413 (97.09%), Postives = 401/413 (97.09%), Query Frame = 0


Query: 1   MHISTSNILYQLHLPLVNGTSNTSSSRYWKDSIVLNSRRRCSQMATVTAIVDELHKLESE 60
           MHISTSNILYQLHLPLVNGTSNTSSSRYWKDSIVLNSRRRCSQMATVTAIVDELHKLESE
Sbjct: 1   MHISTSNILYQLHLPLVNGTSNTSSSRYWKDSIVLNSRRRCSQMATVTAIVDELHKLESE 60

Query: 61  REKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSDMLAAWVR 120
           REKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSDMLAAWVR
Sbjct: 61  REKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSDMLAAWVR 120

Query: 121 IMKPERADWLSVLKHLRILNHPLYIQIGTSSSASLVAEAALVEITFEANTRDYTKIIHHY 180
           IMKPERADWLSVLKHLRILNHPLYIQ         VAEAALVEITFEANTRDYTKIIHHY
Sbjct: 121 IMKPERADWLSVLKHLRILNHPLYIQ---------VAEAALVEITFEANTRDYTKIIHHY 180

Query: 181 GKQNQLEDAEKVLLTMRERGFACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           GKQNQLEDAEKVLLTMRERG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GKQNQLEDAEKVLLTMRERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNR 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNR
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNR 360

Query: 361 LNAALELLIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAKEVNR 414
           LNAALELLIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAKEVNR
Sbjct: 361 LNAALELLIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAKEVNR 404

[Close]

BLAST of MELO3C006182.2 vs. NCBI nr
Match: XP_004134345.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Cucumis sativus] >XP_011650789.1 PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Cucumis sativus] >KGN56592.1 hypothetical protein Csa_3G126080 [Cucumis sativus])

HSP 1 Score: 377.5 bits (968), Expect = 5.9e-101
Identity = 381/413 (92.25%), Postives = 390/413 (94.43%), Query Frame = 0


Query: 1   MHISTSNILYQLHLPLVNGTSNTSSSRYWKDSIVLNSRRRCSQMATVTAIVDELHKLESE 60
           M ISTSNILYQLHLPLVNGTSNTS SRYW+DSIVL+SRRRCSQMAT TAIVDE+HKLESE
Sbjct: 1   MQISTSNILYQLHLPLVNGTSNTSYSRYWRDSIVLSSRRRCSQMATATAIVDEIHKLESE 60

Query: 61  REKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSDMLAAWVR 120
           REKPRFRWVEVGY+ITETQKQAISQLPPKMTK+CKAVMKQIICFSPQKGELSDMLAAWVR
Sbjct: 61  REKPRFRWVEVGYDITETQKQAISQLPPKMTKRCKAVMKQIICFSPQKGELSDMLAAWVR 120

Query: 121 IMKPERADWLSVLKHLRILNHPLYIQIGTSSSASLVAEAALVEITFEANTRDYTKIIHHY 180
           IMKPERADWL VLKHLRILNHPLYIQ         VAEAAL EITFEANTRDYTKIIHHY
Sbjct: 121 IMKPERADWLLVLKHLRILNHPLYIQ---------VAEAALEEITFEANTRDYTKIIHHY 180

Query: 181 GKQNQLEDAEKVLLTMRERGFACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           GKQNQLEDAEKVLL+M       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GKQNQLEDAEKVLLSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNR 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 360

Query: 361 LNAALELLIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAKEVNR 414
           LN+ALELLIDLEKDNVMVGKEAS+ILAAWLKRLGVVEE+EIVLREYT KEVNR
Sbjct: 361 LNSALELLIDLEKDNVMVGKEASKILAAWLKRLGVVEEVEIVLREYTEKEVNR 404

[Close]

BLAST of MELO3C006182.2 vs. NCBI nr
Match: XP_023526282.1 (pentatricopeptide repeat-containing protein At1g01970 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.4 bits (755), Expect = 2.9e-76
Identity = 217/419 (51.79%), Postives = 243/419 (58.00%), Query Frame = 0


Query: 1   MHISTSNILYQLH--LPLVNGTSNTSSSRYWKDSI-----VLNSRRRCSQMATVTAIVDE 60
           M  S  NILYQ+H   PLVNGT+ +S S Y +        VL+ RRRC Q+ATV AIV+E
Sbjct: 1   MGTSVCNILYQIHPKQPLVNGTARSSYSCYCRGLTGRRLRVLSPRRRCYQLATVAAIVEE 60

Query: 61  LHKLESEREKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSD 120
           +H LES REKPRFRWVEVG +ITE QKQAISQLPPKMTK+CKAVMKQIICFSPQ G LSD
Sbjct: 61  VHTLESGREKPRFRWVEVGSDITEMQKQAISQLPPKMTKRCKAVMKQIICFSPQNGNLSD 120

Query: 121 MLAAWVRIMKPERADWLSVLKHLRILNHPLYIQIGTSSSASLVAEAALVEITFEANTRDY 180
           MLAAWVRIMKP+RADWLSVLKHLRIL+HPLYI+         VAEAALVE TFEA+TRDY
Sbjct: 121 MLAAWVRIMKPKRADWLSVLKHLRILDHPLYIE---------VAEAALVERTFEASTRDY 180

Query: 181 TKIIHHYGKQNQLEDAEKVLLTMRERGFACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           TKIIH+YGK+NQLEDAE++LL+MRE                                   
Sbjct: 181 TKIIHYYGKRNQLEDAERILLSMRE----------------------------------- 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
                                         XXXXXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 241 ------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXKQTF 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
                                                                       
Sbjct: 301 EELKLLEEPLDRRSYDAMIMAFIRAGMPEEGQSQKAQIAFDNMRRAGLEPSDKCIALVLS 345

Query: 361 XXXXXNRLNAALELLIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAKEVN 413
                NRLNAALELLIDLEK+ +MVGKEAS++LAAWLKRLGVVEE+E+VLREY  KE +
Sbjct: 361 AYEKENRLNAALELLIDLEKEKLMVGKEASEVLAAWLKRLGVVEEVELVLREYAVKEAS 345

[Close]

BLAST of MELO3C006182.2 vs. NCBI nr
Match: XP_023526280.1 (pentatricopeptide repeat-containing protein At1g01970 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023526281.1 pentatricopeptide repeat-containing protein At1g01970 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75
Identity = 343/419 (81.86%), Postives = 369/419 (88.07%), Query Frame = 0


Query: 1   MHISTSNILYQLH--LPLVNGTSNTSSSRYWKDSI-----VLNSRRRCSQMATVTAIVDE 60
           M  S  NILYQ+H   PLVNGT+ +S S Y +        VL+ RRRC Q+ATV AIV+E
Sbjct: 1   MGTSVCNILYQIHPKQPLVNGTARSSYSCYCRGLTGRRLRVLSPRRRCYQLATVAAIVEE 60

Query: 61  LHKLESEREKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSD 120
           +H LES REKPRFRWVEVG +ITE QKQAISQLPPKMTK+CKAVMKQIICFSPQ G LSD
Sbjct: 61  VHTLESGREKPRFRWVEVGSDITEMQKQAISQLPPKMTKRCKAVMKQIICFSPQNGNLSD 120

Query: 121 MLAAWVRIMKPERADWLSVLKHLRILNHPLYIQIGTSSSASLVAEAALVEITFEANTRDY 180
           MLAAWVRIMKP+RADWLSVLKHLRIL+HPLYI+         VAEAALVE TFEA+TRDY
Sbjct: 121 MLAAWVRIMKPKRADWLSVLKHLRILDHPLYIE---------VAEAALVERTFEASTRDY 180

Query: 181 TKIIHHYGKQNQLEDAEKVLLTMRERGFACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           TKIIH+YGK+NQLEDAE++LL+        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 TKIIHYYGKRNQLEDAERILLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXNRLNAALELLIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAKEVN 413
           XXXXXNRLNAALELLIDLEK+ +MVGKEAS++LAAWLKRLGVVEE+E+VLREY  KE +
Sbjct: 361 XXXXXNRLNAALELLIDLEKEKLMVGKEASEVLAAWLKRLGVVEEVELVLREYAVKEAS 410

[Close]

BLAST of MELO3C006182.2 vs. NCBI nr
Match: XP_022980308.1 (pentatricopeptide repeat-containing protein At1g01970 [Cucurbita maxima] >XP_022980309.1 pentatricopeptide repeat-containing protein At1g01970 [Cucurbita maxima] >XP_022980310.1 pentatricopeptide repeat-containing protein At1g01970 [Cucurbita maxima] >XP_022980311.1 pentatricopeptide repeat-containing protein At1g01970 [Cucurbita maxima] >XP_022980312.1 pentatricopeptide repeat-containing protein At1g01970 [Cucurbita maxima] >XP_022980313.1 pentatricopeptide repeat-containing protein At1g01970 [Cucurbita maxima])

HSP 1 Score: 292.4 bits (747), Expect = 2.5e-75
Identity = 343/419 (81.86%), Postives = 368/419 (87.83%), Query Frame = 0


Query: 1   MHISTSNILYQLH--LPLVNGTSNTSSSRYWKDSI-----VLNSRRRCSQMATVTAIVDE 60
           M  S  NILYQ+H   PLVNGT+ +S S Y +        VL+ RR C Q+ATV AIV+E
Sbjct: 1   MGTSVCNILYQIHPKQPLVNGTARSSYSCYCRGLTGRRLRVLSPRRTCYQLATVAAIVEE 60

Query: 61  LHKLESEREKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSD 120
           +HKLES REKPRFRWVEVG +ITE QKQAISQLPPKMTK+CKAVMKQIICF PQ G LSD
Sbjct: 61  VHKLESGREKPRFRWVEVGSDITEMQKQAISQLPPKMTKRCKAVMKQIICFLPQNGHLSD 120

Query: 121 MLAAWVRIMKPERADWLSVLKHLRILNHPLYIQIGTSSSASLVAEAALVEITFEANTRDY 180
           MLAAWVRIMKP+RADWLSVLKHLRIL+HPLYI+         VAEAALVE TFEA+TRDY
Sbjct: 121 MLAAWVRIMKPKRADWLSVLKHLRILDHPLYIE---------VAEAALVERTFEASTRDY 180

Query: 181 TKIIHHYGKQNQLEDAEKVLLTMRERGFACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           TKIIH+YGKQNQLEDAE++LL+        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 TKIIHYYGKQNQLEDAERILLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXNRLNAALELLIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAKEVN 413
           XXXXXNRLNAALELLIDLEK+ +MVGKEAS++LAAWLKRLGVVEE+E+VLREY  KE +
Sbjct: 361 XXXXXNRLNAALELLIDLEKEKLMVGKEASEVLAAWLKRLGVVEEVELVLREYAVKEAS 410

[Close]

BLAST of MELO3C006182.2 vs. TAIR10
Match: AT1G01970.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 171.0 bits (432), Expect = 1.5e-42
Identity = 87/194 (44.85%), Postives = 126/194 (64.95%), Query Frame = 0


Query: 10  YQLHLPLVNGTSNTSSSRYWKDSIVLNS--RRRCSQMATVTAIVDELHKLESEREKPRFR 69
           + L  PLV          + ++ +++ S   R CS     +  + E+ + E   +   F 
Sbjct: 12  FGLKCPLVIARHRLYHRMFRRNPLLVESHLNRLCSCKCNASLAIGEVVEKEDAEQSRSFN 71

Query: 70  WVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSDMLAAWVRIMKPERA 129
           W +VG N+TE Q +AI+++P KM+K+C+A+M+QIICFSP+KG   D+L AW+R M P RA
Sbjct: 72  WADVGLNLTEEQDEAITRIPIKMSKRCQALMRQIICFSPEKGSFCDLLGAWLRRMNPIRA 131

Query: 130 DWLSVLKHLRILNHPLYIQIGTSSSASLVAEAALVEITFEANTRDYTKIIHHYGKQNQLE 189
           DWLS+LK L+ L+ P YI+         VAE +L++ +FEAN RDYTKIIH+YGK NQ+E
Sbjct: 132 DWLSILKELKNLDSPFYIK---------VAEFSLLQDSFEANARDYTKIIHYYGKLNQVE 191

Query: 190 DAEKVLLTMRERGF 202
           DAE+ LL+M+ RGF
Sbjct: 192 DAERTLLSMKNRGF 196

[Close]

BLAST of MELO3C006182.2 vs. TAIR10
Match: AT1G19520.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 86.7 bits (213), Expect = 3.8e-17
Identity = 48/135 (35.56%), Postives = 80/135 (59.26%), Query Frame = 0


Query: 67  RWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKG-ELSDMLAAWVRIMKPE 126
           +WVE+   I E +++A  + P  +T KCK VM+++   S Q+G + S +LA W  +++P 
Sbjct: 291 KWVEMADKIHEAEEEADWREPKPVTGKCKLVMEKL--ESLQEGDDPSGLLAEWAELLEPN 350

Query: 127 RADWLSVLKHLRILNHPLYIQIGTSSSASLVAEAALVEITFEANTRDYTKIIHHYGKQNQ 186
           R DW++++  LR  N   Y++         VAE  L E +F A+  DY+K+IH + K+N 
Sbjct: 351 RVDWIALINQLREGNTHAYLK---------VAEGVLDEKSFNASISDYSKLIHIHAKENH 410

Query: 187 LEDAEKVLLTMRERG 201
           +ED E++L  M + G
Sbjct: 411 IEDVERILKKMSQNG 414

[Close]

BLAST of MELO3C006182.2 vs. Swiss-Prot
Match: sp|Q9LPC4|PPR1_ARATH (Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana OX=3702 GN=At1g01970 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.7e-41
Identity = 87/194 (44.85%), Postives = 126/194 (64.95%), Query Frame = 0


Query: 10  YQLHLPLVNGTSNTSSSRYWKDSIVLNS--RRRCSQMATVTAIVDELHKLESEREKPRFR 69
           + L  PLV          + ++ +++ S   R CS     +  + E+ + E   +   F 
Sbjct: 12  FGLKCPLVIARHRLYHRMFRRNPLLVESHLNRLCSCKCNASLAIGEVVEKEDAEQSRSFN 71

Query: 70  WVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSDMLAAWVRIMKPERA 129
           W +VG N+TE Q +AI+++P KM+K+C+A+M+QIICFSP+KG   D+L AW+R M P RA
Sbjct: 72  WADVGLNLTEEQDEAITRIPIKMSKRCQALMRQIICFSPEKGSFCDLLGAWLRRMNPIRA 131

Query: 130 DWLSVLKHLRILNHPLYIQIGTSSSASLVAEAALVEITFEANTRDYTKIIHHYGKQNQLE 189
           DWLS+LK L+ L+ P YI+         VAE +L++ +FEAN RDYTKIIH+YGK NQ+E
Sbjct: 132 DWLSILKELKNLDSPFYIK---------VAEFSLLQDSFEANARDYTKIIHYYGKLNQVE 191

Query: 190 DAEKVLLTMRERGF 202
           DAE+ LL+M+ RGF
Sbjct: 192 DAERTLLSMKNRGF 196

[Close]

BLAST of MELO3C006182.2 vs. Swiss-Prot
Match: sp|Q8LEZ4|NFD5_ARATH (Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD5 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.7e-06
Identity = 28/82 (34.15%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 67  RWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKG-ELSDMLAAWVRIMKPE 126
           +WVE+   I E +++A  + P  +T KCK VM+++   S Q+G + S +LA W  +++P 
Sbjct: 291 KWVEMADKIHEAEEEADWREPKPVTGKCKLVMEKL--ESLQEGDDPSGLLAEWAELLEPN 350

Query: 127 RADWLSVLKHLRILNHPLYIQI 148
           R DW++++  LR  N   Y+++
Sbjct: 351 RVDWIALINQLREGNTHAYLKV 370

[Close]

BLAST of MELO3C006182.2 vs. TrEMBL
Match: tr|A0A1S3AWA7|A0A1S3AWA7_CUCME (pentatricopeptide repeat-containing protein At1g01970 OS=Cucumis melo OX=3656 GN=LOC103483346 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 2.2e-112
Identity = 401/413 (97.09%), Postives = 401/413 (97.09%), Query Frame = 0


Query: 1   MHISTSNILYQLHLPLVNGTSNTSSSRYWKDSIVLNSRRRCSQMATVTAIVDELHKLESE 60
           MHISTSNILYQLHLPLVNGTSNTSSSRYWKDSIVLNSRRRCSQMATVTAIVDELHKLESE
Sbjct: 1   MHISTSNILYQLHLPLVNGTSNTSSSRYWKDSIVLNSRRRCSQMATVTAIVDELHKLESE 60

Query: 61  REKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSDMLAAWVR 120
           REKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSDMLAAWVR
Sbjct: 61  REKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSDMLAAWVR 120

Query: 121 IMKPERADWLSVLKHLRILNHPLYIQIGTSSSASLVAEAALVEITFEANTRDYTKIIHHY 180
           IMKPERADWLSVLKHLRILNHPLYIQ         VAEAALVEITFEANTRDYTKIIHHY
Sbjct: 121 IMKPERADWLSVLKHLRILNHPLYIQ---------VAEAALVEITFEANTRDYTKIIHHY 180

Query: 181 GKQNQLEDAEKVLLTMRERGFACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           GKQNQLEDAEKVLLTMRERG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GKQNQLEDAEKVLLTMRERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNR 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNR
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNR 360

Query: 361 LNAALELLIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAKEVNR 414
           LNAALELLIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAKEVNR
Sbjct: 361 LNAALELLIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAKEVNR 404

[Close]

BLAST of MELO3C006182.2 vs. TrEMBL
Match: tr|A0A0A0L7L8|A0A0A0L7L8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126080 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.9e-101
Identity = 381/413 (92.25%), Postives = 390/413 (94.43%), Query Frame = 0


Query: 1   MHISTSNILYQLHLPLVNGTSNTSSSRYWKDSIVLNSRRRCSQMATVTAIVDELHKLESE 60
           M ISTSNILYQLHLPLVNGTSNTS SRYW+DSIVL+SRRRCSQMAT TAIVDE+HKLESE
Sbjct: 1   MQISTSNILYQLHLPLVNGTSNTSYSRYWRDSIVLSSRRRCSQMATATAIVDEIHKLESE 60

Query: 61  REKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSDMLAAWVR 120
           REKPRFRWVEVGY+ITETQKQAISQLPPKMTK+CKAVMKQIICFSPQKGELSDMLAAWVR
Sbjct: 61  REKPRFRWVEVGYDITETQKQAISQLPPKMTKRCKAVMKQIICFSPQKGELSDMLAAWVR 120

Query: 121 IMKPERADWLSVLKHLRILNHPLYIQIGTSSSASLVAEAALVEITFEANTRDYTKIIHHY 180
           IMKPERADWL VLKHLRILNHPLYIQ         VAEAAL EITFEANTRDYTKIIHHY
Sbjct: 121 IMKPERADWLLVLKHLRILNHPLYIQ---------VAEAALEEITFEANTRDYTKIIHHY 180

Query: 181 GKQNQLEDAEKVLLTMRERGFACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           GKQNQLEDAEKVLL+M       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 GKQNQLEDAEKVLLSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNR 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 360

Query: 361 LNAALELLIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAKEVNR 414
           LN+ALELLIDLEKDNVMVGKEAS+ILAAWLKRLGVVEE+EIVLREYT KEVNR
Sbjct: 361 LNSALELLIDLEKDNVMVGKEASKILAAWLKRLGVVEEVEIVLREYTEKEVNR 404

[Close]

BLAST of MELO3C006182.2 vs. TrEMBL
Match: tr|W9QSE5|W9QSE5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022440 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-47
Identity = 97/155 (62.58%), Postives = 121/155 (78.06%), Query Frame = 0


Query: 47  VTAIVDELHKLESEREKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSP 106
           V   V+E  K E+   KP+F+WVEVG  ITE+QK+AISQL PKMTK+C+A+MKQ+ICFS 
Sbjct: 44  VATSVEETEKAENGGGKPKFKWVEVGPGITESQKEAISQLSPKMTKRCRALMKQLICFSA 103

Query: 107 QKGELSDMLAAWVRIMKPERADWLSVLKHLRILNHPLYIQIGTSSSASLVAEAALVEITF 166
            K  L+++LAAWVRIMKP+RADWL+++K L+I++HPLY Q         VAE AL+E +F
Sbjct: 104 HKASLNELLAAWVRIMKPQRADWLAIIKQLKIMDHPLYFQ---------VAEVALLEESF 163

Query: 167 EANTRDYTKIIHHYGKQNQLEDAEKVLLTMRERGF 202
           EAN RDYTKIIH YGKQN+LEDAEK LL M+ RGF
Sbjct: 164 EANIRDYTKIIHCYGKQNRLEDAEKTLLAMKSRGF 189

[Close]

BLAST of MELO3C006182.2 vs. TrEMBL
Match: tr|A0A1Q3B5N6|A0A1Q3B5N6_CEPFO (PPR domain-containing protein/PPR_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06849 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 5.5e-47
Identity = 277/358 (77.37%), Postives = 307/358 (85.75%), Query Frame = 0


Query: 53  ELHKLESEREKPRFRWVEVG-YNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGEL 112
           E HK E E+E P+F+W+EVG  N+T+ Q+ AIS+LPPKM  +CKA ++QIIC+SP+KG L
Sbjct: 57  ETHKKE-EQEIPKFKWLEVGPNNLTQAQRNAISELPPKMMNRCKAFLRQIICYSPEKGSL 116

Query: 113 SDMLAAWVRIMKPERADWLSVLKHLRILNHPLYIQIGTSSSASLVAEAALVEITFEANTR 172
           SD+L  WVRIMKP RADWL+VLK L I+ HPLY+Q         VAE AL+E  FEA  R
Sbjct: 117 SDLLVTWVRIMKPRRADWLAVLKQLNIMEHPLYLQ---------VAELALLEEFFEATIR 176

Query: 173 DYTKIIHHYGKQNQLEDAEKVLLTMRERGFACXXXXXXXXXXXXXXXXXXXXXXXXXXXX 232
           DYTKIIHHYGKQN+L+DAE  LL M +RG  C     XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 177 DYTKIIHHYGKQNRLQDAENTLLAMEKRGIVCDQVTLXXXXXXXXXXXXXXXXXXXXXXX 236

Query: 233 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 292
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 237 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 296

Query: 293 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 352
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 297 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 356

Query: 353 XXXXXXXNRLNAALELLIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAK 410
           XXXXXXX  LN AL+ LI LE+D ++VGKEAS++LA W KRLGVVEE+E+VLREYTA+
Sbjct: 357 XXXXXXXXXLNVALDFLIRLERDGIIVGKEASEVLAGWFKRLGVVEEVELVLREYTAR 404

[Close]

BLAST of MELO3C006182.2 vs. TrEMBL
Match: tr|A0A2I4GRZ8|A0A2I4GRZ8_9ROSI (pentatricopeptide repeat-containing protein At1g01970 OS=Juglans regia OX=51240 GN=LOC109010321 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 8.8e-45
Identity = 92/150 (61.33%), Postives = 119/150 (79.33%), Query Frame = 0


Query: 51  VDELHKLESER-EKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKG 110
           V+++ K   ++ EKPRF+WVE+G NI+E QK+AI++LPPKMTK+CKA+M+QIICF+PQKG
Sbjct: 57  VEQIEKTVIDQIEKPRFKWVEIGRNISEAQKKAIAELPPKMTKRCKALMRQIICFTPQKG 116

Query: 111 ELSDMLAAWVRIMKPERADWLSVLKHLRILNHPLYIQIGTSSSASLVAEAALVEITFEAN 170
             SD+L AWV IMKP RADWL+VLK LR ++HPLY++         VAE AL+E +FEAN
Sbjct: 117 SFSDLLVAWVWIMKPRRADWLTVLKELRTMDHPLYLK---------VAELALLEESFEAN 176

Query: 171 TRDYTKIIHHYGKQNQLEDAEKVLLTMRER 200
            RDYTKIIH YGKQNQL+DAE+ L  M+ +
Sbjct: 177 IRDYTKIIHAYGKQNQLQDAERTLSAMKSK 197

The following BLAST results are available for this feature:

BLAST of MELO3C006182.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438151.1	3.3e-112	97.09	PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Cucumis melo] ...	[more]
XP_004134345.1	5.9e-101	92.25	PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Cucumis sativu...	[more]
XP_023526282.1	2.9e-76	51.79	pentatricopeptide repeat-containing protein At1g01970 isoform X2 [Cucurbita pepo...	[more]
XP_023526280.1	1.5e-75	81.86	pentatricopeptide repeat-containing protein At1g01970 isoform X1 [Cucurbita pepo...	[more]
XP_022980308.1	2.5e-75	81.86	pentatricopeptide repeat-containing protein At1g01970 [Cucurbita maxima] >XP_022...	[more]

BLAST of MELO3C006182.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01970.1	1.5e-42	44.85	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G19520.1	3.8e-17	35.56	pentatricopeptide (PPR) repeat-containing protein	[more]

BLAST of MELO3C006182.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LPC4\|PPR1_ARATH	2.7e-41	44.85	Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana OX...	[more]
sp\|Q8LEZ4\|NFD5_ARATH	3.7e-06	34.15	Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of MELO3C006182.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWA7\|A0A1S3AWA7_CUCME	2.2e-112	97.09	pentatricopeptide repeat-containing protein At1g01970 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0L7L8\|A0A0A0L7L8_CUCSA	3.9e-101	92.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126080 PE=4 SV=1	[more]
tr\|W9QSE5\|W9QSE5_9ROSA	1.9e-47	62.58	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022440 PE=4 SV=1	[more]
tr\|A0A1Q3B5N6\|A0A1Q3B5N6_CEPFO	5.5e-47	77.37	PPR domain-containing protein/PPR_3 domain-containing protein OS=Cephalotus foll...	[more]
tr\|A0A2I4GRZ8\|A0A2I4GRZ8_9ROSI	8.8e-45	61.33	pentatricopeptide repeat-containing protein At1g01970 OS=Juglans regia OX=51240 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
biological_process	GO:0008150	biological_process
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006182.2.1	MELO3C006182.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 173..204 e-value: 7.1E-6 score: 23.9 coord: 242..272 e-value: 1.8E-5 score: 22.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 173..215 e-value: 4.8E-8 score: 33.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 315..341 e-value: 0.18 score: 12.0 coord: 277..300 e-value: 0.13 score: 12.4 coord: 242..270 e-value: 1.4E-6 score: 28.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 239..273 score: 10.238
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 169..203 score: 9.613
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 204..238 score: 7.739
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 344..378 score: 5.733
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 274..308 score: 8.692
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 309..343 score: 9.679
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 92..269 e-value: 1.2E-21 score: 78.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 275..410 e-value: 3.2E-18 score: 68.3
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 23..410
None	No IPR available	PANTHER	PTHR24015:SF457	SUBFAMILY NOT NAMED	coord: 23..410

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006182.2	Csa3G126080	Cucumber (Chinese Long) v2	cumedB223
MELO3C006182.2	CSPI03G09500	Wild cucumber (PI 183967)	cpimedB224
MELO3C006182.2	Cucsa.257710	Cucumber (Gy14) v1	cgymedB432
MELO3C006182.2	Lsi05G019650	Bottle gourd (USVL1VR-Ls)	lsimedB396
MELO3C006182.2	Cp4.1LG03g17120	Cucurbita pepo (Zucchini)	cpemedB693
MELO3C006182.2	CsGy3G009570	Cucumber (Gy14) v2	cgybmedB201
MELO3C006182.2	Cla021304	Watermelon (97103) v1	medwmB447
MELO3C006182.2	ClCG05G002180	Watermelon (Charleston Gray)	medwcgB416
MELO3C006182.2	Cla97C05G082700	Watermelon (97103) v2	medwmbB423
MELO3C006182.2	Bhi01G000192	Wax gourd	medwgoB545
MELO3C006182.2	Carg14830	Silver-seed gourd	carmedB0629
MELO3C006182.2	CsaV3_3G009620	Cucumber (Chinese Long) v3	cucmedB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006182.2	Cucumber (Chinese Long) v3	cucmedB405
MELO3C006182.2	Cucumber (Chinese Long) v3	cucmedB493
MELO3C006182.2	Watermelon (97103) v2	medwmbB408
MELO3C006182.2	Watermelon (97103) v2	medwmbB439
MELO3C006182.2	Cucumber (Gy14) v2	cgybmedB352
MELO3C006182.2	Cucumber (Gy14) v2	cgybmedB430
MELO3C006182.2	Cucumber (Gy14) v1	cgymedB499
MELO3C006182.2	Cucumber (Gy14) v1	cgymedB592
MELO3C006182.2	Cucurbita maxima (Rimu)	cmamedB273
MELO3C006182.2	Cucurbita maxima (Rimu)	cmamedB863
MELO3C006182.2	Cucurbita maxima (Rimu)	cmamedB951
MELO3C006182.2	Cucurbita moschata (Rifu)	cmomedB260
MELO3C006182.2	Cucurbita moschata (Rifu)	cmomedB857
MELO3C006182.2	Cucurbita moschata (Rifu)	cmomedB941
MELO3C006182.2	Cucurbita pepo (Zucchini)	cpemedB372
MELO3C006182.2	Cucurbita pepo (Zucchini)	cpemedB951
MELO3C006182.2	Wild cucumber (PI 183967)	cpimedB396
MELO3C006182.2	Wild cucumber (PI 183967)	cpimedB483
MELO3C006182.2	Cucumber (Chinese Long) v2	cumedB389
MELO3C006182.2	Cucumber (Chinese Long) v2	cumedB474
MELO3C006182.2	Melon (DHL92) v3.6.1	medmedB017
MELO3C006182.2	Melon (DHL92) v3.6.1	medmedB051
MELO3C006182.2	Bottle gourd (USVL1VR-Ls)	lsimedB035
MELO3C006182.2	Watermelon (Charleston Gray)	medwcgB435
MELO3C006182.2	Watermelon (97103) v1	medwmB466
MELO3C006182.2	Watermelon (97103) v1	medwmB473
MELO3C006182.2	Silver-seed gourd	carmedB0500