Cla021094 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021094
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Matrix metalloproteinase (AHRD V1 *- D7LBU9_ARALL); contains Interpro domain(s) IPR001818 Peptidase M10A and M12B, matrixin and adamalysin
Location	Chr5 : 399292 .. 400527 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCGAATGCCGATGGTGCTGACGTACGCATTTTTCAAGGAGAATTTGATAAGCAACTTGAGTTTAAAAGACGTGAGAGCCGTATTTCGTAACGCATCATTGAAATGGGCCCACGTGATTCCGGTGAGTTTCAGGAGACCGACGACTATGGGTACGCCGATATTAAAATCGGGTTTACAGAGGCGATCACAGCGAGGGGCAGGCGTTCAATGGCGCGTTGGGTGTTTTGGCGCATTCTTTTTCCCTGAGATTGGGATGCGGCGGAGACGTGGGCGATGGCGACGCACGAGAATGGTCATTTGTTGGGGCTGGGTCACAGGTCGGTGAGAGAATCGGTGATGTACCCAAGCTTGAAGCCAAGGGAAAAGAAGGCAAATTTAGAAATGGATGACGTGGAAGGCGTGCAAGCTCTGTACGGATCGAATCCGAATTTCAAGTTTGAGTCTTTGGAATGGGAGTCTGATACTTCTGCCAATCAGCCACCTGTTTCCACGTGTACAACAACATGGCCTTTTCCCTCGCCTTCTTTCTAATTTCCACTTACCATTTTATTCTTTTTCCATAAGGATAACAAATTTACACACACATATATATATTCTTGCGGGTGGAAAAAAAAAAAAGCGTTCTATTTAATATTTATACATACATATATACATATGGTTGCGATTTCTTATGTTACATAGAAAACTACAAAACATATTTTAATGTAAAATCGTACATAGTTTAACATACGCATTAAACATGATTTTGAGAGCAGAAGGTATTTAGAGTTTTATATCTTGGGTTTATTTCATGAGCAAATGAAATGCATTAAAGAAGAAGTTGAAGTAATCGAAAAGGCGTTGATTATATAAAATACACAGAGTCATGTAGTTTGTTGATATATAATTTGGAAAAGCGAGATACACATACAGTATTAGATTAAGATCATATATAAGAAAATGAAAATTGAAAAAGTATTTGGTTTGTTCAGCACAAGACATCCTTGAGGAGCTTGTAGCGGCGTGGAGCAGGGCGAGGGGAGGGGAATCCGGGGCCGGAGCTTCTTCTTTGCGTGATCTGATCCTTGTGGGAGGTAGTACCGGTATTATTAGTCGCAGTTGTAGAGGCAGGGCGGCGGGTTATCTGTTGGCTTCGACACCAATCGCATATTTGAAGTATGGGATCCCCCGATTGATCCCCACAGTAGAAGTTGCTGCAGTAACTGAAGTAATTACAAAATGTAAGTTTTAA

mRNA sequence

ATGCGGCGAATGCCGATGGTGCTGACGTACGCATTTTTCAAGGAGAATTTGATAAGCAACTTGAGTTTAAAAGACGTGAGAGCCGTATTTCGTAACGCATCATTGAAATGGGCCCACGTGATTCCGGTGAGTTTCAGGAGACCGACGACTATGGATTGGGATGCGGCGGAGACGTGGGCGATGGCGACGCACGAGAATGGTCATTTGTTGGGGCTGGGTCACAGGTCGGTGAGAGAATCGGTGATGTACCCAAGCTTGAAGCCAAGGGAAAAGAAGGCAAATTTAGAAATGGATGACGTGGAAGGCGTGCAAGCTCTGTACGGATCGAATCCGAATTTCAAGTTTGAGTCTTTGGAATGGGAGTCTGATACTTCTGCCAATCAGCCACCTGTTTCCACGTCACAAGACATCCTTGAGGAGCTTGTAGCGGCGTGGAGCAGGGCGAGGGGAGGGGAATCCGGGGCCGGAGCTTCTTCTTTGCGTGATCTGATCCTTGTGGGAGGTAGTACCGGTATTATTAGTCGCAGTTGTAGAGGCAGGGCGGCGGGTTATCTGTTGGCTTCGACACCAATCGCATATTTGAAGTATGGGATCCCCCGATTGATCCCCACAGTAGAAGTTGCTGCAGTAACTGAAGTAATTACAAAATGTAAGTTTTAA

Coding sequence (CDS)

ATGCGGCGAATGCCGATGGTGCTGACGTACGCATTTTTCAAGGAGAATTTGATAAGCAACTTGAGTTTAAAAGACGTGAGAGCCGTATTTCGTAACGCATCATTGAAATGGGCCCACGTGATTCCGGTGAGTTTCAGGAGACCGACGACTATGGATTGGGATGCGGCGGAGACGTGGGCGATGGCGACGCACGAGAATGGTCATTTGTTGGGGCTGGGTCACAGGTCGGTGAGAGAATCGGTGATGTACCCAAGCTTGAAGCCAAGGGAAAAGAAGGCAAATTTAGAAATGGATGACGTGGAAGGCGTGCAAGCTCTGTACGGATCGAATCCGAATTTCAAGTTTGAGTCTTTGGAATGGGAGTCTGATACTTCTGCCAATCAGCCACCTGTTTCCACGTCACAAGACATCCTTGAGGAGCTTGTAGCGGCGTGGAGCAGGGCGAGGGGAGGGGAATCCGGGGCCGGAGCTTCTTCTTTGCGTGATCTGATCCTTGTGGGAGGTAGTACCGGTATTATTAGTCGCAGTTGTAGAGGCAGGGCGGCGGGTTATCTGTTGGCTTCGACACCAATCGCATATTTGAAGTATGGGATCCCCCGATTGATCCCCACAGTAGAAGTTGCTGCAGTAACTGAAGTAATTACAAAATGTAAGTTTTAA

Protein sequence

MRRMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMDWDAAETWAMATHENGHLLGLGHRSVRESVMYPSLKPREKKANLEMDDVEGVQALYGSNPNFKFESLEWESDTSANQPPVSTSQDILEELVAAWSRARGGESGAGASSLRDLILVGGSTGIISRSCRGRAAGYLLASTPIAYLKYGIPRLIPTVEVAAVTEVITKCKF

Homology

[Close]

BLAST of Cla021094 vs. Swiss-Prot
Match: 4MMP_ARATH (Metalloendoproteinase 4-MMP OS=Arabidopsis thaliana GN=4MMP PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-19
Identity = 70/183 (38.25%), Postives = 84/183 (45.90%), Query Frame = 1


Query: 2   RRMPMVLTYAFFKENLISNLSLKDVRAVFR---------------------NASLK---- 61
           R +P+ LTYAF +ENL   L+  D+R VFR                      A +K    
Sbjct: 136 RDVPLKLTYAFSQENLTPYLAPTDIRRVFRRAFGKWASVIPVSFIETEDYVIADIKIGFF 195

Query: 62  ----------------WAHVIPVSFRRPTTMDWDAAETWAM----------------ATH 121
                            AH       R   +  D AETWA+                A H
Sbjct: 196 NGDHGDGEPFDGVLGVLAHTFSPENGR---LHLDKAETWAVDFDEEKSSVAVDLESVAVH 255

Query: 122 ENGHLLGLGHRSVRESVMYPSLKPREKKANLEMDDVEGVQALYGSNPNFKFESLEWESDT 128
           E GH+LGLGH SV+++ MYP+LKPR KK NL MDDV GVQ+LYG+NPNF   SL   S+T
Sbjct: 256 EIGHVLGLGHSSVKDAAMYPTLKPRSKKVNLNMDDVVGVQSLYGTNPNFTLNSL-LASET 314

[Close]

BLAST of Cla021094 vs. Swiss-Prot
Match: 1MMP_ARATH (Metalloendoproteinase 1-MMP OS=Arabidopsis thaliana GN=1MMP PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.0e-15
Identity = 44/91 (48.35%), Postives = 51/91 (56.04%), Query Frame = 1


Query: 54  DAAETW-----------------AMATHENGHLLGLGHRSVRESVMYPSLKPREKKANLE 113
           DAAETW                 ++ATHE GHLLGLGH S   +VMYPSL+PR KK +L 
Sbjct: 248 DAAETWIVDDDLKGSSEVAVDLESVATHEIGHLLGLGHSSQESAVMYPSLRPRTKKVDLT 307

Query: 114 MDDVEGVQALYGSNPNFKFESLEWESDTSAN 128
           +DDV GV  LYG NP  + +SL    D+  N
Sbjct: 308 VDDVAGVLKLYGPNPKLRLDSLTQSEDSIKN 338

HSP 2 Score: 40.4 bits (93), Expect = 2.9e-02
Identity = 19/38 (50.00%), Postives = 24/38 (63.16%), Query Frame = 1


Query: 8   LTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSF 46
           LTYA  K + +  L+ +DV+ VFR A  +W+ VIPVSF
Sbjct: 164 LTYAISKTHKLDYLTSEDVKTVFRRAFSQWSSVIPVSF 201

[Close]

BLAST of Cla021094 vs. Swiss-Prot
Match: 3MMP_ARATH (Metalloendoproteinase 3-MMP OS=Arabidopsis thaliana GN=3MMP PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.6e-14
Identity = 39/82 (47.56%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 54  DAAETWAMATHENGHLLGLGHRSVRESVMYPSLKPREKKANLEMDDVEGVQALYGSNPNF 113
           +A +  ++A HE GHLLGLGH SV  S+MYP+++   +K +L  DDVEGVQ LYG+NPNF
Sbjct: 275 EAVDLESVAVHEIGHLLGLGHSSVEGSIMYPTIRTGRRKVDLTTDDVEGVQYLYGANPNF 334

Query: 114 KFESLEWESDTSANQPPVSTSQ 136
                       +  PP ST Q
Sbjct: 335 ----------NGSRSPPPSTQQ 346

HSP 2 Score: 31.2 bits (69), Expect = 1.8e+01
Identity = 15/40 (37.50%), Postives = 22/40 (55.00%), Query Frame = 1


Query: 8   LTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRR 48
           LTYAF   N ++    ++V++VF  A  +W  V P++F R
Sbjct: 175 LTYAFDPRNALT----EEVKSVFSRAFTRWEEVTPLTFTR 210

[Close]

BLAST of Cla021094 vs. Swiss-Prot
Match: 2MMP_ARATH (Metalloendoproteinase 2-MMP OS=Arabidopsis thaliana GN=2MMP PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-13
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 55  AAETWAMATHENGHLLGLGHRSVRESVMYPSLKPREKKANLEMDDVEGVQALYGSNPNF 114
           A +  ++A HE GHLLGLGH SV ES+MYP++   ++K +L  DDVEG+Q LYG+NPNF
Sbjct: 271 AVDLESVAVHEIGHLLGLGHSSVEESIMYPTITTGKRKVDLTNDDVEGIQYLYGANPNF 329

[Close]

BLAST of Cla021094 vs. Swiss-Prot
Match: MEP1_SOYBN (Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-11
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 46  RRPTTMDWDAAETWAMATHENGHLLGLGHRSVRESVMYPSLKPREKKANLEMDDVEGVQA 105
           + P T  +D     ++A HE GHLLGLGH S   ++MYPS+ PR +K NL  DD++G++ 
Sbjct: 243 KSPVTSAFDLE---SVAVHEIGHLLGLGHSSDLRAIMYPSIPPRTRKVNLAQDDIDGIRK 302

Query: 106 LYGSNP 112
           LYG NP
Sbjct: 303 LYGINP 305

[Close]

BLAST of Cla021094 vs. TrEMBL
Match: A0A0A0L2Y8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117950 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.0e-39
Identity = 105/186 (56.45%), Postives = 114/186 (61.29%), Query Frame = 1


Query: 2   RRMPMVLTYAFFKENLISNLSLKDVRAVFR---------------------NASLKWAH- 61
           RRMPMVLTYAFFK+N +SNLSL+DVRAVFR                      A +K    
Sbjct: 62  RRMPMVLTYAFFKDNWMSNLSLEDVRAVFRKAFSKWAHVIPVSFEETDDYGYADIKIGFY 121

Query: 62  ---------------VIPVSFRRPT-TMDWDAAETWAM----------------ATHENG 121
                          V+  SF      +  DAAETWA+                ATHE G
Sbjct: 122 RGDHSDGQAFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFEKEKSAVAVDLESVATHEIG 181

Query: 122 HLLGLGHRSVRESVMYPSLKPREKKANLEMDDVEGVQALYGSNPNFKFESLEWESDTSAN 134
           HLLGLGH SVRESVMYPSLKPREKKANLE+DDVEGVQALYGSNPNFKFESLE ESDTSA+
Sbjct: 182 HLLGLGHSSVRESVMYPSLKPREKKANLEVDDVEGVQALYGSNPNFKFESLELESDTSAS 241

[Close]

BLAST of Cla021094 vs. TrEMBL
Match: W9QHU8_9ROSA (Metalloendoproteinase 1 OS=Morus notabilis GN=L484_021785 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 83/183 (45.36%), Postives = 98/183 (53.55%), Query Frame = 1


Query: 2   RRMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMDW-------- 61
           RRMPM LTYAF  +  I  LS  +++AVF+ A  +WA VIPVSF    T D+        
Sbjct: 104 RRMPMKLTYAFSPDYTIRYLSSSEIKAVFKRAFARWASVIPVSFVE--TEDYVYADIKIG 163

Query: 62  --------------------------------DAAETWAM----------------ATHE 121
                                           DAAETWA+                ATHE
Sbjct: 164 FYHGEHGDSEPFDGVLGVLAHSFSPENGKVHLDAAETWAVDFRSEKSAVAMDLESVATHE 223

Query: 122 NGHLLGLGHRSVRESVMYPSLKPREKKANLEMDDVEGVQALYGSNPNFKFESLEWESDTS 129
            GHLLGL H SV+E+VMYP+LKPREKK +L++DD+EGVQALYGSNPNF   SL  ESD S
Sbjct: 224 IGHLLGLAHSSVKEAVMYPTLKPREKKLDLQLDDIEGVQALYGSNPNFNIGSLS-ESDIS 283

[Close]

BLAST of Cla021094 vs. TrEMBL
Match: A0A067FD95_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037540mg PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 75/163 (46.01%), Postives = 97/163 (59.51%), Query Frame = 1


Query: 1   MRRMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMD-------- 60
           +R  PM LTYAF K ++I  + L DV+A F+++  +W+ VIPV+F      D        
Sbjct: 151 VRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210

Query: 61  ------------WDAAETWAM----------------ATHENGHLLGLGHRSVRESVMYP 120
                       +DAAETWA+                ATHE GH+LGL H SV+E+VMYP
Sbjct: 211 YHGDHGDGQPFHFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYP 270

Query: 121 SLKPREKKANLEMDDVEGVQALYGSNPNFKFESLEWESDTSAN 128
           SL PR +K +L++DDVEGVQALYGSNPNFKF SL  ES+  +N
Sbjct: 271 SLTPRTRKVDLKVDDVEGVQALYGSNPNFKFSSL-LESENFSN 312

[Close]

BLAST of Cla021094 vs. TrEMBL
Match: B9T8P6_RICCO (Metalloendoproteinase 1, putative OS=Ricinus communis GN=RCOM_0291330 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 76/178 (42.70%), Postives = 95/178 (53.37%), Query Frame = 1


Query: 5   PMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRR-------PTTMDW---- 64
           P+ LTY+F  EN+I  +SL D++ VFR A  +WA VIPV+F            + W    
Sbjct: 123 PIALTYSFSPENMIDYISLDDIKIVFRRAFSRWASVIPVNFMEVEEYKSADIKIGWYHHD 182

Query: 65  ---------------------------DAAETWAM----------------ATHENGHLL 124
                                      D AETWA+                ATHE GH+L
Sbjct: 183 HGDGEPFDGVLGVLAHAFSPENGRFHLDEAETWAVDFDKVKSRVAVDLESVATHEIGHIL 242

Query: 125 GLGHRSVRESVMYPSLKPREKKANLEMDDVEGVQALYGSNPNFKFESLEWESDTSANQ 129
           GL H SV+E+VMYPSL PR KK +L++DDVEGVQALYGSNPNFKF SL  ES+ S ++
Sbjct: 243 GLAHSSVKEAVMYPSLSPRTKKVDLKIDDVEGVQALYGSNPNFKFSSL-MESENSIDK 299

[Close]

BLAST of Cla021094 vs. TrEMBL
Match: A0A0L9VUB5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g171500 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 77/181 (42.54%), Postives = 99/181 (54.70%), Query Frame = 1


Query: 2   RRMPMVLTYAFFKENLISNLSLKDVRAVFR-----NASL--------------------- 61
           R MPM LTYAF +EN+I +LS+KD+R  FR      AS+                     
Sbjct: 154 RSMPMTLTYAFSRENMIHSLSMKDIREAFRKAFLRWASVIPVSFVEVSDSEVSDLKIGFY 213

Query: 62  KWAH-----------VIPVSFRRPT-TMDWDAAETWAM----------------ATHENG 121
           K  H           V+  SF      +  DAAETWA+                ATHE G
Sbjct: 214 KGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFEATVSEVAVDLESVATHEIG 273

Query: 122 HLLGLGHRSVRESVMYPSLKPREKKANLEMDDVEGVQALYGSNPNFKFESLEWESDTSAN 129
           HLLGL H SV+++VMYPSL+P++K+ANL +DD++GVQ+LYGSNPNF+ E    ESD SAN
Sbjct: 274 HLLGLSHSSVKDAVMYPSLRPQDKRANLNIDDIKGVQSLYGSNPNFRSE-WSLESDMSAN 333

[Close]

BLAST of Cla021094 vs. NCBI nr
Match: gi|778676675|ref|XP_011650638.1| (PREDICTED: metalloendoproteinase 1 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 8.7e-39
Identity = 105/186 (56.45%), Postives = 114/186 (61.29%), Query Frame = 1


Query: 2   RRMPMVLTYAFFKENLISNLSLKDVRAVFR---------------------NASLKWAH- 61
           RRMPMVLTYAFFK+N +SNLSL+DVRAVFR                      A +K    
Sbjct: 62  RRMPMVLTYAFFKDNWMSNLSLEDVRAVFRKAFSKWAHVIPVSFEETDDYGYADIKIGFY 121

Query: 62  ---------------VIPVSFRRPT-TMDWDAAETWAM----------------ATHENG 121
                          V+  SF      +  DAAETWA+                ATHE G
Sbjct: 122 RGDHSDGQAFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFEKEKSAVAVDLESVATHEIG 181

Query: 122 HLLGLGHRSVRESVMYPSLKPREKKANLEMDDVEGVQALYGSNPNFKFESLEWESDTSAN 134
           HLLGLGH SVRESVMYPSLKPREKKANLE+DDVEGVQALYGSNPNFKFESLE ESDTSA+
Sbjct: 182 HLLGLGHSSVRESVMYPSLKPREKKANLEVDDVEGVQALYGSNPNFKFESLELESDTSAS 241

[Close]

BLAST of Cla021094 vs. NCBI nr
Match: gi|659074776|ref|XP_008437790.1| (PREDICTED: metalloendoproteinase 1 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 8.7e-39
Identity = 106/186 (56.99%), Postives = 112/186 (60.22%), Query Frame = 1


Query: 2   RRMPMVLTYAFFKENLISNLSLKDVRAVFR---------------------NASLKWAH- 61
           RRMPMVLTYAFFKEN +SNLSLKDVRAVFR                      A +K    
Sbjct: 73  RRMPMVLTYAFFKENWMSNLSLKDVRAVFRKAFSKWAHVIPVSFEETDDYGYADIKIGFY 132

Query: 62  ---------------VIPVSFRRPT-TMDWDAAETWAM----------------ATHENG 121
                          V+  SF      +  DAAETWA+                ATHE G
Sbjct: 133 RGDHSDGQAFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFEKEKSAVAVDLESVATHEIG 192

Query: 122 HLLGLGHRSVRESVMYPSLKPREKKANLEMDDVEGVQALYGSNPNFKFESLEWESDTSAN 134
           HLLGLGH SVRESVMYPSLKPREKKANLE+DDVEGVQALYGSNPNFKFESLE ESDTS  
Sbjct: 193 HLLGLGHSSVRESVMYPSLKPREKKANLEVDDVEGVQALYGSNPNFKFESLELESDTSDT 252

[Close]

BLAST of Cla021094 vs. NCBI nr
Match: gi|641842522|gb|KDO61427.1| (hypothetical protein CISIN_1g037540mg [Citrus sinensis])

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27
Identity = 75/163 (46.01%), Postives = 97/163 (59.51%), Query Frame = 1


Query: 1   MRRMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMD-------- 60
           +R  PM LTYAF K ++I  + L DV+A F+++  +W+ VIPV+F      D        
Sbjct: 151 VRESPMTLTYAFSKTDMIDYIDLTDVKAAFKSSFQRWSSVIPVNFTEIYDYDSADIHIGF 210

Query: 61  ------------WDAAETWAM----------------ATHENGHLLGLGHRSVRESVMYP 120
                       +DAAETWA+                ATHE GH+LGL H SV+E+VMYP
Sbjct: 211 YHGDHGDGQPFHFDAAETWAVDMESVKSRVAVDLESVATHEIGHVLGLAHTSVKEAVMYP 270

Query: 121 SLKPREKKANLEMDDVEGVQALYGSNPNFKFESLEWESDTSAN 128
           SL PR +K +L++DDVEGVQALYGSNPNFKF SL  ES+  +N
Sbjct: 271 SLTPRTRKVDLKVDDVEGVQALYGSNPNFKFSSL-LESENFSN 312

[Close]

BLAST of Cla021094 vs. NCBI nr
Match: gi|703072324|ref|XP_010089255.1| (Metalloendoproteinase 1 [Morus notabilis])

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27
Identity = 83/183 (45.36%), Postives = 98/183 (53.55%), Query Frame = 1


Query: 2   RRMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMDW-------- 61
           RRMPM LTYAF  +  I  LS  +++AVF+ A  +WA VIPVSF    T D+        
Sbjct: 104 RRMPMKLTYAFSPDYTIRYLSSSEIKAVFKRAFARWASVIPVSFVE--TEDYVYADIKIG 163

Query: 62  --------------------------------DAAETWAM----------------ATHE 121
                                           DAAETWA+                ATHE
Sbjct: 164 FYHGEHGDSEPFDGVLGVLAHSFSPENGKVHLDAAETWAVDFRSEKSAVAMDLESVATHE 223

Query: 122 NGHLLGLGHRSVRESVMYPSLKPREKKANLEMDDVEGVQALYGSNPNFKFESLEWESDTS 129
            GHLLGL H SV+E+VMYP+LKPREKK +L++DD+EGVQALYGSNPNF   SL  ESD S
Sbjct: 224 IGHLLGLAHSSVKEAVMYPTLKPREKKLDLQLDDIEGVQALYGSNPNFNIGSLS-ESDIS 283

[Close]

BLAST of Cla021094 vs. NCBI nr
Match: gi|1009143777|ref|XP_015889440.1| (PREDICTED: metalloendoproteinase 4-MMP-like [Ziziphus jujuba])

HSP 1 Score: 126.3 bits (316), Expect = 6.4e-26
Identity = 77/181 (42.54%), Postives = 92/181 (50.83%), Query Frame = 1


Query: 2   RRMPMVLTYAFFKENLISNLSLKDVRAVFRNASLKWAHVIPVSFRRPTTMDW-------- 61
           R MPM LTYAF  + +I  L   DV+ VFR A  +WA  IPVSF+      +        
Sbjct: 158 RPMPMTLTYAFSPDYMIKYLRFSDVKEVFRRAFARWASAIPVSFKETDDYGFADIKIGFY 217

Query: 62  ------------------------------DAAETWAM----------------ATHENG 121
                                         DAAETWA+                ATHE G
Sbjct: 218 NGQHGDSEPFDGVLGVLAHSFSPESGNFHLDAAETWAVDFGIEKSATAFDLESVATHEIG 277

Query: 122 HLLGLGHRSVRESVMYPSLKPREKKANLEMDDVEGVQALYGSNPNFKFESLEWESDTSAN 129
           H+LGL H  V+E+VMYPSLKPREKK +L+MDD++GVQALYGSNPNF   SL  ESD   N
Sbjct: 278 HILGLAHSPVKEAVMYPSLKPREKKMDLQMDDIQGVQALYGSNPNFTVGSLS-ESDICTN 337

The following BLAST results are available for this feature:

BLAST of Cla021094 vs. Swiss-Prot


Match Name	E-value	Identity	Description
4MMP_ARATH	1.5e-19	38.25	Metalloendoproteinase 4-MMP OS=Arabidopsis thaliana GN=4MMP PE=1 SV=1	[more]
1MMP_ARATH	3.0e-15	48.35	Metalloendoproteinase 1-MMP OS=Arabidopsis thaliana GN=1MMP PE=1 SV=1	[more]
3MMP_ARATH	9.6e-14	47.56	Metalloendoproteinase 3-MMP OS=Arabidopsis thaliana GN=3MMP PE=1 SV=1	[more]
2MMP_ARATH	3.7e-13	57.63	Metalloendoproteinase 2-MMP OS=Arabidopsis thaliana GN=2MMP PE=1 SV=1	[more]
MEP1_SOYBN	3.4e-11	48.48	Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2	[more]

BLAST of Cla021094 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2Y8_CUCSA	6.0e-39	56.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117950 PE=3 SV=1	[more]
W9QHU8_9ROSA	1.1e-27	45.36	Metalloendoproteinase 1 OS=Morus notabilis GN=L484_021785 PE=3 SV=1	[more]
A0A067FD95_CITSI	1.1e-27	46.01	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037540mg PE=3 SV=1	[more]
B9T8P6_RICCO	1.0e-25	42.70	Metalloendoproteinase 1, putative OS=Ricinus communis GN=RCOM_0291330 PE=3 SV=1	[more]
A0A0L9VUB5_PHAAN	1.4e-22	42.54	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g171500 PE=3 SV=1	[more]

BLAST of Cla021094 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676675\|ref\|XP_011650638.1\|	8.7e-39	56.45	PREDICTED: metalloendoproteinase 1 [Cucumis sativus]	[more]
gi\|659074776\|ref\|XP_008437790.1\|	8.7e-39	56.99	PREDICTED: metalloendoproteinase 1 [Cucumis melo]	[more]
gi\|641842522\|gb\|KDO61427.1\|	1.5e-27	46.01	hypothetical protein CISIN_1g037540mg [Citrus sinensis]	[more]
gi\|703072324\|ref\|XP_010089255.1\|	1.5e-27	45.36	Metalloendoproteinase 1 [Morus notabilis]	[more]
gi\|1009143777\|ref\|XP_015889440.1\|	6.4e-26	42.54	PREDICTED: metalloendoproteinase 4-MMP-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001818	Pept_M10_metallopeptidase
IPR006026	Peptidase_Metallo
IPR021190	Pept_M10A
IPR024079	MetalloPept_cat_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0004222	metalloendopeptidase activity
GO:0008270	zinc ion binding
GO:0008237	metallopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Cellular Component**
Term	Definition
GO:0031012	extracellular matrix

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0030574	collagen catabolic process
biological_process	GO:0030198	extracellular matrix organization
cellular_component	GO:0031012	extracellular matrix
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0008237	metallopeptidase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU45831	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021094	Cla021094.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU45831	WMU45831	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001818	Peptidase M10, metallopeptidase	PFAM	PF00413	Peptidase_M10	coord: 58..108 score: 8.2
IPR006026	Peptidase, metallopeptidase	SMART	SM00235	col_5	coord: 7..109 score: 9.
IPR021190	Peptidase M10A	PRINTS	PR00138	MATRIXIN	coord: 30..45 score: 2.6E-14coord: 61..86 score: 2.6E-14coord: 95..108 score: 2.6
IPR024079	Metallopeptidase, catalytic domain	GENE3D	G3DSA:3.40.390.10		coord: 61..112 score: 8.5
None	No IPR available	PANTHER	PTHR10201	MATRIX METALLOPROTEINASE	coord: 8..114 score: 3.7
None	No IPR available	PANTHER	PTHR10201:SF140	F20P5.11 PROTEIN	coord: 8..114 score: 3.7
None	No IPR available	unknown	SSF55486	Metalloproteases ("zincins"), catalytic domain	coord: 8..111 score: 1.39

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021094	Cla97C05G080250	Watermelon (97103) v2	wmwmbB206
Cla021094	Csa3G117950	Cucumber (Chinese Long) v2	cuwmB233
Cla021094	MELO3C005965	Melon (DHL92) v3.5.1	mewmB461
Cla021094	ClCG05G000280	Watermelon (Charleston Gray)	wcgwmB286
Cla021094	CSPI03G07310	Wild cucumber (PI 183967)	cpiwmB231
Cla021094	Cucsa.259810	Cucumber (Gy14) v1	cgywmB479
Cla021094	CmaCh06G009640	Cucurbita maxima (Rimu)	cmawmB799
Cla021094	CmoCh06G009860	Cucurbita moschata (Rifu)	cmowmB793
Cla021094	Lsi05G022000	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021094	Cp4.1LG08g00420	Cucurbita pepo (Zucchini)	cpewmB845
Cla021094	CsGy3G007450	Cucumber (Gy14) v2	cgybwmB217
Cla021094	MELO3C005965.2	Melon (DHL92) v3.6.1	medwmB447
Cla021094	Carg24169	Silver-seed gourd	carwmB0094
Cla021094	CsaV3_3G007430	Cucumber (Chinese Long) v3	cucwmB239
Cla021094	Bhi01G000431	Wax gourd	wgowmB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021094	Cucurbita moschata (Rifu)	cmowmB231
Cla021094	Cucurbita pepo (Zucchini)	cpewmB613
Cla021094	Silver-seed gourd	carwmB0130
Cla021094	Cucurbita maxima (Rimu)	cmawmB242