Cla020287 (gene) Watermelon (97103) v1

NameCla020287
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCCR4-NOT transcription complex subunit 8 (AHRD V1 ***- B4FMS3_MAIZE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold
LocationChr2 : 21195871 .. 21196803 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGAAGAAATCGAGCACCTCCGAGAAGAGAAAAGCCTTTGATCCGACAAGTTTGGGCTTCGAATTTCGATTCCGAAATCTCCAAATTCGACAAATGTCTTCAATTTCATTCCATTCTGTCTATCGACACAGAATTTCCTGGGTTTATTACAAAATCCCCTTGGGGTTCGACTGAAGAAGAGATATATGAAGATTTCCGATCCAATGTAAACCAAACCAAATTGATTCAACTGGGTATTACGGCTTCTGATAATTCGGGACAAATCGGCGGTACATGGGAGTTCAATTTCTCCGATTTCGACCCACAATCCGACGCTCATGGCCCTTCCTCTGTTTCGTTTCTGGAAGACAACGGCATGGATTTCCAAAAACTGAAGAAAGACGGAATACCCATCACATTATTCACCGTAAATTTTTTGAGCATCATACGAAAACATAATGTTTTCAGATGGGTTACCTTCCATGGGTTGTACGATATCGGGTATTTGATCAAAGCCATGGGTTTAATCGCCATCTTGCCGGAATCAATGGAGGAATTCGCGACGGTGGTGGTGGAGGGAGTGGGAATCGTGAGGGATTTGAAACATATGTCTCGATTTTGTGAGGGATTGGAAGATGGGAAACTTGGGCTGGAAAGATTAGGGCAATTGCTCAATCAAAAACGGTATGGATGGAAGCATAATGCTGGATCGGATAGTTTGCTTACGGCTTCTTCCCATTTGGAAATGATGGAACGATTTGGCATGGATCCAGGAATTTGTGATGGCTTTTTGTATGGCTTTTCGAATAAGCTTGAATCCATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGGTTTATCATCATCCCAAGATGATTCGATTTGGTCAAATTCCATGGTCAATCCCACTTTATTGTTATACTCCTTCTTATTACATTGCTTATTAA

mRNA sequence

ATGGGTCGAAGAAATCGAGCACCTCCGAGAAGAGAAAAGCCTTTGATCCGACAAGTTTGGGCTTCGAATTTCGATTCCGAAATCTCCAAATTCGACAAATGTCTTCAATTTCATTCCATTCTGTCTATCGACACAGAATTTCCTGGGTTTATTACAAAATCCCCTTGGGGTTCGACTGAAGAAGAGATATATGAAGATTTCCGATCCAATGTAAACCAAACCAAATTGATTCAACTGGGTATTACGGCTTCTGATAATTCGGGACAAATCGGCGGTACATGGGAGTTCAATTTCTCCGATTTCGACCCACAATCCGACGCTCATGGCCCTTCCTCTGTTTCGTTTCTGGAAGACAACGGCATGGATTTCCAAAAACTGAAGAAAGACGGAATACCCATCACATTATTCACCGTAAATTTTTTGAGCATCATACGAAAACATAATGTTTTCAGATGGGTTACCTTCCATGGGTTGTACGATATCGGGTATTTGATCAAAGCCATGGGTTTAATCGCCATCTTGCCGGAATCAATGGAGGAATTCGCGACGGTGGTGGTGGAGGGAGTGGGAATCGTGAGGGATTTGAAACATATGTCTCGATTTTGTGAGGGATTGGAAGATGGGAAACTTGGGCTGGAAAGATTAGGGCAATTGCTCAATCAAAAACGGTATGGATGGAAGCATAATGCTGGATCGGATAGTTTGCTTACGGCTTCTTCCCATTTGGAAATGATGGAACGATTTGGCATGGATCCAGGAATTTGTGATGGCTTTTTGTATGGCTTTTCGAATAAGCTTGAATCCATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGGTTTATCATCATCCCAAGATGATTCGATTTGGTCAAATTCCATGGTCAATCCCACTTTATTGTTATACTCCTTCTTATTACATTGCTTATTAA

Coding sequence (CDS)

ATGGGTCGAAGAAATCGAGCACCTCCGAGAAGAGAAAAGCCTTTGATCCGACAAGTTTGGGCTTCGAATTTCGATTCCGAAATCTCCAAATTCGACAAATGTCTTCAATTTCATTCCATTCTGTCTATCGACACAGAATTTCCTGGGTTTATTACAAAATCCCCTTGGGGTTCGACTGAAGAAGAGATATATGAAGATTTCCGATCCAATGTAAACCAAACCAAATTGATTCAACTGGGTATTACGGCTTCTGATAATTCGGGACAAATCGGCGGTACATGGGAGTTCAATTTCTCCGATTTCGACCCACAATCCGACGCTCATGGCCCTTCCTCTGTTTCGTTTCTGGAAGACAACGGCATGGATTTCCAAAAACTGAAGAAAGACGGAATACCCATCACATTATTCACCGTAAATTTTTTGAGCATCATACGAAAACATAATGTTTTCAGATGGGTTACCTTCCATGGGTTGTACGATATCGGGTATTTGATCAAAGCCATGGGTTTAATCGCCATCTTGCCGGAATCAATGGAGGAATTCGCGACGGTGGTGGTGGAGGGAGTGGGAATCGTGAGGGATTTGAAACATATGTCTCGATTTTGTGAGGGATTGGAAGATGGGAAACTTGGGCTGGAAAGATTAGGGCAATTGCTCAATCAAAAACGGTATGGATGGAAGCATAATGCTGGATCGGATAGTTTGCTTACGGCTTCTTCCCATTTGGAAATGATGGAACGATTTGGCATGGATCCAGGAATTTGTGATGGCTTTTTGTATGGCTTTTCGAATAAGCTTGAATCCATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGGTTTATCATCATCCCAAGATGATTCGATTTGGTCAAATTCCATGGTCAATCCCACTTTATTGTTATACTCCTTCTTATTACATTGCTTATTAA

Protein sequence

MGRRNRAPPRREKPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVGIVRDLKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERFGMDPGICDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSIPLYCYTPSYYIAY
BLAST of Cla020287 vs. Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.4e-44
Identity = 99/251 (39.44%), Postives = 143/251 (56.97%), Query Frame = 1

Query: 13  KPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVN 72
           +PL R+VW SN D E+++  +CL+   +++ DTE+PG I ++ + S+ +E Y   + NV 
Sbjct: 6   QPLARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVE 65

Query: 73  QTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIP 132
            TKLIQ G T  +  G+IGG WE NFS+F   SD     S+ FL  +G+D QK++ +G+ 
Sbjct: 66  NTKLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVD 125

Query: 133 I--TLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVG 192
           +    F    +++ R      +VTF G YD  Y +  +     LPE+  EFAT VV+  G
Sbjct: 126 MFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILN-HGKLPETHGEFATEVVKVFG 185

Query: 193 IVRDLKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERFGM 252
            V D K M+ FCEGL +  LGL +L QLL   R G  H+AGSDSL+TA   +++   +  
Sbjct: 186 QVYDTKVMAGFCEGLGE-HLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVY-E 245

Query: 253 DPGICDGFLYG 262
           D     G +YG
Sbjct: 246 DSRFARGLIYG 253

BLAST of Cla020287 vs. Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.7e-38
Identity = 92/222 (41.44%), Postives = 129/222 (58.11%), Query Frame = 1

Query: 28  ISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLIQLGITASDNS 87
           +S  + CL+ +  ++IDTEFP  + ++   +T+EE Y D   +V++ KLIQLG+T  D +
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 88  GQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPIT-LFTVNFLSIIRK 147
           G+IGGTWE NFSDF    DA    S+ FL  NG+D +K++++GI I   F+  F  + + 
Sbjct: 61  GRIGGTWEINFSDFG-VDDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 148 HNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVGIVRDLKHMSRFCEGLE 207
                WVTFHG YDI YL+K     A LP + E F+  V   +G V DLK M+  CEGL 
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGFTGEA-LPVTSERFSKAVARVLGSVYDLKVMAGRCEGL- 180

Query: 208 DGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERF 249
             +LGLE L       R G  H+AGS++ LTA    +++  F
Sbjct: 181 SSRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPF 219

BLAST of Cla020287 vs. Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.1e-38
Identity = 89/223 (39.91%), Postives = 130/223 (58.30%), Query Frame = 1

Query: 18  QVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLI 77
           +VW  N  +E++    CL+  + ++IDTEFPG + ++P  +++E  Y D + NV+ T LI
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 78  QLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITLFT 137
           QLG+T       I  TWE N SDF+         S++FL++NG+D  K++++GI I  F 
Sbjct: 64  QLGLTLFGKG--ITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFF 123

Query: 138 VNFLSII-RKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVG-IVRDL 197
           + F  I+  KH   RWVTF G YD  YL+K +     LPE+ +EF   V + +G  V D+
Sbjct: 124 MEFSQILNEKHGKMRWVTFQGSYDKAYLLKGL-TRKPLPETSKEFDETVQQLLGRFVYDV 183

Query: 198 KHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTA 239
           K M+  C GL   + GL+R+  +L  +R G  H+AGSDS LTA
Sbjct: 184 KKMAGLCSGL-SSRFGLQRIADVLQMRRVGKAHHAGSDSELTA 222

BLAST of Cla020287 vs. Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.0e-37
Identity = 90/223 (40.36%), Postives = 126/223 (56.50%), Query Frame = 1

Query: 18  QVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLI 77
           +VW  N + E++    CL+  S ++IDTEFPG + ++P  ++EE  Y D + NV+ T LI
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 78  QLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITLFT 137
           QLG T  D  G    TWE N SDFD         S++FL+ NG++  K++++GI I  F 
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFF 127

Query: 138 VNFLSII-RKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVG-IVRDL 197
            +F  I+  K     WV F G YD  YL+K +     LPE+ EEF   V + +G  V D+
Sbjct: 128 RDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDV 187

Query: 198 KHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTA 239
           K ++  C GL   + GL+R+  +L  KR G  H+AGSDS LTA
Sbjct: 188 KKIAESCSGL-SSQFGLQRIADVLQMKRVGKAHHAGSDSELTA 228

BLAST of Cla020287 vs. Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.7e-37
Identity = 90/223 (40.36%), Postives = 126/223 (56.50%), Query Frame = 1

Query: 18  QVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLI 77
           +VW  N + E+     CL+  S ++IDTEFPG + ++P  ++EE  Y D + NV+ T LI
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 78  QLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITLFT 137
           QLG T  D  G I  TWE N SDF+         S++FL+ NG++  K+ ++GI I  F 
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFF 122

Query: 138 VNFLSIIR-KHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVG-IVRDL 197
            +F  I++ K     WV F G YD  YL+K +     LPE+ EEF   V + +G  V D+
Sbjct: 123 RDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDV 182

Query: 198 KHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTA 239
           K ++  C GL   + GL+R+  +L  KR G  H+AGSDS LTA
Sbjct: 183 KKIAESCSGL-SSRFGLQRIADVLQMKRVGKAHHAGSDSELTA 223

BLAST of Cla020287 vs. TrEMBL
Match: A0A0A0LPP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270190 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 2.9e-119
Identity = 215/311 (69.13%), Postives = 257/311 (82.64%), Query Frame = 1

Query: 1   MGRRNRAPPRREKPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTE 60
           MG RN+    REKPLIRQVWASNFDSEI++FD+CL+FH+IL+IDTEFPGFI +SP GS +
Sbjct: 1   MGGRNQTRSTREKPLIRQVWASNFDSEIARFDECLRFHTILTIDTEFPGFIAQSPRGSID 60

Query: 61  EEIYEDFRSNVNQTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNG 120
           +E+Y+DF  NVNQTKLIQLGITASD+ GQIGG+WEFNFSDFD ++DAH P ++ FLE NG
Sbjct: 61  DELYKDFCFNVNQTKLIQLGITASDDLGQIGGSWEFNFSDFDFEADAHSPYAIPFLEHNG 120

Query: 121 MDFQKLKKDGIPITLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEE 180
           +D +K+KKDGIPI  FT  FL I+RK ++FRWVTFHGLYDIGYLIKAMGLI +LP+SMEE
Sbjct: 121 LDLKKMKKDGIPIASFTKKFLPILRKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEE 180

Query: 181 FATVVVEGVGIVRDLKHMSRFCEGLED-GKLGLERLGQLLNQKRYGWKHNAGSDSLLTAS 240
           FATVVV  VGIVRDLKHM++FCEGL+D G+LGLERLG+LLN KR+G KHNAGSDSLLTAS
Sbjct: 181 FATVVVNEVGIVRDLKHMAKFCEGLDDHGRLGLERLGKLLNLKRFGMKHNAGSDSLLTAS 240

Query: 241 SHLEMMERFGMDPGICDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSIPL 300
           +HLEM+ERFGM+  +C+GFLYGFS  LES    MKMKMKMK+ HH  ++RF         
Sbjct: 241 AHLEMVERFGMNSKVCNGFLYGFSETLES----MKMKMKMKICHH-NILRFS-------- 297

Query: 301 YCYTPSYYIAY 311
             Y P Y++ Y
Sbjct: 301 -LYIPCYFVFY 297

BLAST of Cla020287 vs. TrEMBL
Match: V4TLB7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016106mg PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.5e-59
Identity = 129/297 (43.43%), Postives = 180/297 (60.61%), Query Frame = 1

Query: 16  IRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTK 75
           I  VW  NF+  +   DK L   ++LSIDTEFPGF+  +P  +   E Y D + NV+ T 
Sbjct: 7   ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTH 66

Query: 76  LIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITL 135
           LIQLGIT SDN G+I  T+EFNFSDFD + D H   S+  L+D+G+DF K++KDGIP  +
Sbjct: 67  LIQLGITLSDNEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCV 126

Query: 136 FTVNFLSIIRKHNV-FRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVGIVRD 195
           F   FL ++ KH    +WVTFHGLYD+ YL+K     A LP + E F+ V       V D
Sbjct: 127 FAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDA-LPPTAEAFSGVAALFFQSVFD 186

Query: 196 LKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERFGMDPGI 255
           +K ++ +C+GL+  KLGL +L ++LN KR+G  H+AGSDSLLTA+   EM  R+ ++   
Sbjct: 187 IKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRYELEESA 246

Query: 256 CDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSIPLYCYTP---SYYI 309
            DGFLYG  +++ES   ++ M   M+    P+       P  +P   + P   SYY+
Sbjct: 247 FDGFLYGLDSRIESKPAEIMMFQYMQPLVIPQ-------PLLVPTQFHHPLALSYYV 295

BLAST of Cla020287 vs. TrEMBL
Match: A0A067ETV6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038950mg PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.3e-58
Identity = 129/297 (43.43%), Postives = 179/297 (60.27%), Query Frame = 1

Query: 16  IRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTK 75
           I  VW  NF+  +   DK L   ++LSIDTEFPGF+  +P  +   E Y D + NV+ T 
Sbjct: 7   ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTH 66

Query: 76  LIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITL 135
           LIQLGIT SD  G+I  T+EFNFSDFD + D H   S+  L+D+G+DF K++KDGIP  +
Sbjct: 67  LIQLGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCV 126

Query: 136 FTVNFLSIIRKHNV-FRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVGIVRD 195
           F   FL ++ KH    +WVTFHGLYD+ YL+K     A LP + E F+ V       V D
Sbjct: 127 FAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDA-LPPTAEAFSGVAALFFQSVFD 186

Query: 196 LKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERFGMDPGI 255
           +K ++ +C+GL+  KLGL +L ++LN KR+G  H+AGSDSLLTA+   EM  R+ ++   
Sbjct: 187 IKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRYELEESA 246

Query: 256 CDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSIPLYCYTP---SYYI 309
            DGFLYG  +++E    +   ++ M  Y  P MI     P  +P   + P   SYY+
Sbjct: 247 FDGFLYGMDSRIE----RKPAEIMMLQYMQPLMI---PQPLLVPTQFHHPLALSYYV 295

BLAST of Cla020287 vs. TrEMBL
Match: V4S8J5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013857mg PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.8e-57
Identity = 117/274 (42.70%), Postives = 166/274 (60.58%), Query Frame = 1

Query: 16  IRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTK 75
           I  VW  NF  E  +FDK L   +ILSIDTEFPGFI  +P  +    +Y + + NV+ TK
Sbjct: 3   IISVWRENFQQESVQFDKSLHRFNILSIDTEFPGFICSTPRDAPTSVVYNNLKFNVDNTK 62

Query: 76  LIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITL 135
           +IQLGIT SD+ G IG TWEFNFSDFD Q D +   S+  +  NG+DF K+++DGIP  +
Sbjct: 63  IIQLGITLSDDKGNIGSTWEFNFSDFDFQKDPYVEESMRLMRSNGLDFAKIRRDGIPQCV 122

Query: 136 FTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVGIVRDL 195
           F    L I+ KH   +WVTFHGLYD+ ++ K + +   LP+S   FA    +    V D+
Sbjct: 123 FVPRLLEILSKHKNLKWVTFHGLYDLAHITK-LFINHPLPQSARAFAVGATKYFESVLDV 182

Query: 196 KHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERFGMDPGIC 255
           K ++++C+GL  G LGL +L ++L  +R G  HNAGSDS +TA+   +M E+F  +  + 
Sbjct: 183 KVVAKYCDGLMGGNLGLSKLAKILGVERLGEAHNAGSDSFVTAAVFAKMKEKFEFEEKVF 242

Query: 256 DGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIR 290
           DG LYG   ++    MK  + +  K+   P+  R
Sbjct: 243 DGILYGMDERI----MKRSIHVPRKIIPRPRYCR 271

BLAST of Cla020287 vs. TrEMBL
Match: A0A067JGA6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00595 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.1e-53
Identity = 110/249 (44.18%), Postives = 156/249 (62.65%), Query Frame = 1

Query: 19  VWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLIQ 78
           VW  NF  E+   D  L FH ++S+DTEFPGF+ ++P  + E   Y + + NV+ T LIQ
Sbjct: 7   VWHHNFVDELKCIDTLLYFHRVVSVDTEFPGFLIRTPRRACEFHTYSNLKHNVDATTLIQ 66

Query: 79  LGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITLFTV 138
           LG+T SD +G I G WEFNFS FD Q++ H   S+ FL+D+G+DF KLK +GI +  F+ 
Sbjct: 67  LGLTLSDENGNIAGCWEFNFS-FDVQTEVHTDDSLEFLKDHGIDFDKLKNEGIDVRFFSD 126

Query: 139 NFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVG-IVRDLKH 198
            F  I+ KH    W+TFHGLYD+ Y++  M     LP S  EF  ++    G  V D+K+
Sbjct: 127 AFGHILAKHRNLIWITFHGLYDMAYML-TMVTKNSLPHSSLEFTELIANVFGCYVFDIKY 186

Query: 199 MSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERFGMDPGICDG 258
           ++ FC+GL  G+LGLE+L ++L  KR G  H AGSDSLL+A  + ++   +G+D     G
Sbjct: 187 IATFCDGLRKGQLGLEKLAKILRVKRVGGAHQAGSDSLLSAEVYFKLKAVYGIDESKHVG 246

Query: 259 FLYGFSNKL 267
           FLY   N++
Sbjct: 247 FLYSIGNRI 253

BLAST of Cla020287 vs. NCBI nr
Match: gi|449458674|ref|XP_004147072.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis sativus])

HSP 1 Score: 436.4 bits (1121), Expect = 4.1e-119
Identity = 215/311 (69.13%), Postives = 257/311 (82.64%), Query Frame = 1

Query: 1   MGRRNRAPPRREKPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTE 60
           MG RN+    REKPLIRQVWASNFDSEI++FD+CL+FH+IL+IDTEFPGFI +SP GS +
Sbjct: 1   MGGRNQTRSTREKPLIRQVWASNFDSEIARFDECLRFHTILTIDTEFPGFIAQSPRGSID 60

Query: 61  EEIYEDFRSNVNQTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNG 120
           +E+Y+DF  NVNQTKLIQLGITASD+ GQIGG+WEFNFSDFD ++DAH P ++ FLE NG
Sbjct: 61  DELYKDFCFNVNQTKLIQLGITASDDLGQIGGSWEFNFSDFDFEADAHSPYAIPFLEHNG 120

Query: 121 MDFQKLKKDGIPITLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEE 180
           +D +K+KKDGIPI  FT  FL I+RK ++FRWVTFHGLYDIGYLIKAMGLI +LP+SMEE
Sbjct: 121 LDLKKMKKDGIPIASFTKKFLPILRKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEE 180

Query: 181 FATVVVEGVGIVRDLKHMSRFCEGLED-GKLGLERLGQLLNQKRYGWKHNAGSDSLLTAS 240
           FATVVV  VGIVRDLKHM++FCEGL+D G+LGLERLG+LLN KR+G KHNAGSDSLLTAS
Sbjct: 181 FATVVVNEVGIVRDLKHMAKFCEGLDDHGRLGLERLGKLLNLKRFGMKHNAGSDSLLTAS 240

Query: 241 SHLEMMERFGMDPGICDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSIPL 300
           +HLEM+ERFGM+  +C+GFLYGFS  LES    MKMKMKMK+ HH  ++RF         
Sbjct: 241 AHLEMVERFGMNSKVCNGFLYGFSETLES----MKMKMKMKICHH-NILRFS-------- 297

Query: 301 YCYTPSYYIAY 311
             Y P Y++ Y
Sbjct: 301 -LYIPCYFVFY 297

BLAST of Cla020287 vs. NCBI nr
Match: gi|567911399|ref|XP_006448013.1| (hypothetical protein CICLE_v10016106mg [Citrus clementina])

HSP 1 Score: 238.0 bits (606), Expect = 2.2e-59
Identity = 129/297 (43.43%), Postives = 180/297 (60.61%), Query Frame = 1

Query: 16  IRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTK 75
           I  VW  NF+  +   DK L   ++LSIDTEFPGF+  +P  +   E Y D + NV+ T 
Sbjct: 7   ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTH 66

Query: 76  LIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITL 135
           LIQLGIT SDN G+I  T+EFNFSDFD + D H   S+  L+D+G+DF K++KDGIP  +
Sbjct: 67  LIQLGITLSDNEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCV 126

Query: 136 FTVNFLSIIRKHNV-FRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVGIVRD 195
           F   FL ++ KH    +WVTFHGLYD+ YL+K     A LP + E F+ V       V D
Sbjct: 127 FAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDA-LPPTAEAFSGVAALFFQSVFD 186

Query: 196 LKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERFGMDPGI 255
           +K ++ +C+GL+  KLGL +L ++LN KR+G  H+AGSDSLLTA+   EM  R+ ++   
Sbjct: 187 IKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRYELEESA 246

Query: 256 CDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSIPLYCYTP---SYYI 309
            DGFLYG  +++ES   ++ M   M+    P+       P  +P   + P   SYY+
Sbjct: 247 FDGFLYGLDSRIESKPAEIMMFQYMQPLVIPQ-------PLLVPTQFHHPLALSYYV 295

BLAST of Cla020287 vs. NCBI nr
Match: gi|641839672|gb|KDO58599.1| (hypothetical protein CISIN_1g038950mg [Citrus sinensis])

HSP 1 Score: 235.0 bits (598), Expect = 1.8e-58
Identity = 129/297 (43.43%), Postives = 179/297 (60.27%), Query Frame = 1

Query: 16  IRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTK 75
           I  VW  NF+  +   DK L   ++LSIDTEFPGF+  +P  +   E Y D + NV+ T 
Sbjct: 7   ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTH 66

Query: 76  LIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITL 135
           LIQLGIT SD  G+I  T+EFNFSDFD + D H   S+  L+D+G+DF K++KDGIP  +
Sbjct: 67  LIQLGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCV 126

Query: 136 FTVNFLSIIRKHNV-FRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVGIVRD 195
           F   FL ++ KH    +WVTFHGLYD+ YL+K     A LP + E F+ V       V D
Sbjct: 127 FAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDA-LPPTAEAFSGVAALFFQSVFD 186

Query: 196 LKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERFGMDPGI 255
           +K ++ +C+GL+  KLGL +L ++LN KR+G  H+AGSDSLLTA+   EM  R+ ++   
Sbjct: 187 IKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRYELEESA 246

Query: 256 CDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSIPLYCYTP---SYYI 309
            DGFLYG  +++E    +   ++ M  Y  P MI     P  +P   + P   SYY+
Sbjct: 247 FDGFLYGMDSRIE----RKPAEIMMLQYMQPLMI---PQPLLVPTQFHHPLALSYYV 295

BLAST of Cla020287 vs. NCBI nr
Match: gi|567876007|ref|XP_006430593.1| (hypothetical protein CICLE_v10013857mg [Citrus clementina])

HSP 1 Score: 231.1 bits (588), Expect = 2.6e-57
Identity = 117/274 (42.70%), Postives = 166/274 (60.58%), Query Frame = 1

Query: 16  IRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTK 75
           I  VW  NF  E  +FDK L   +ILSIDTEFPGFI  +P  +    +Y + + NV+ TK
Sbjct: 3   IISVWRENFQQESVQFDKSLHRFNILSIDTEFPGFICSTPRDAPTSVVYNNLKFNVDNTK 62

Query: 76  LIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITL 135
           +IQLGIT SD+ G IG TWEFNFSDFD Q D +   S+  +  NG+DF K+++DGIP  +
Sbjct: 63  IIQLGITLSDDKGNIGSTWEFNFSDFDFQKDPYVEESMRLMRSNGLDFAKIRRDGIPQCV 122

Query: 136 FTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVGIVRDL 195
           F    L I+ KH   +WVTFHGLYD+ ++ K + +   LP+S   FA    +    V D+
Sbjct: 123 FVPRLLEILSKHKNLKWVTFHGLYDLAHITK-LFINHPLPQSARAFAVGATKYFESVLDV 182

Query: 196 KHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERFGMDPGIC 255
           K ++++C+GL  G LGL +L ++L  +R G  HNAGSDS +TA+   +M E+F  +  + 
Sbjct: 183 KVVAKYCDGLMGGNLGLSKLAKILGVERLGEAHNAGSDSFVTAAVFAKMKEKFEFEEKVF 242

Query: 256 DGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIR 290
           DG LYG   ++    MK  + +  K+   P+  R
Sbjct: 243 DGILYGMDERI----MKRSIHVPRKIIPRPRYCR 271

BLAST of Cla020287 vs. NCBI nr
Match: gi|657958224|ref|XP_008370627.1| (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Malus domestica])

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 116/252 (46.03%), Postives = 157/252 (62.30%), Query Frame = 1

Query: 16  IRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTK 75
           +  VWA NF  EI   D+CL    I+S DTEFPGF+  +P G++E   Y+D   NV+  K
Sbjct: 5   LTSVWAHNFKQEIXSVDRCLCRFPIVSFDTEFPGFLRNTPRGASEGLXYQDLAFNVDSLK 64

Query: 76  LIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITL 135
           LIQLGIT  D+ G +GGTWEFNF  FD ++D H P S++ L+ NG+D +K  K GI   +
Sbjct: 65  LIQLGITLFDDGGNVGGTWEFNFRGFDEETDPHVPESIALLKTNGLDLEKFGKFGIDSDI 124

Query: 136 FTVNFLSIIRKH-NVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVGIVRD 195
           F   F+ I+R H     WV+FHGLYD  Y++K +    I P S  EFA +       V D
Sbjct: 125 FVEGFVEILRVHRGRLVWVSFHGLYDSAYVMKLVTRKTI-PSSPTEFAKMAGRLFERVYD 184

Query: 196 LKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERFGMDPGI 255
           LK M+++C GL  G++GLER+ ++L  +R G  H AGSDSLLTA   L+   +FG+ PG+
Sbjct: 185 LKFMAKYCPGLFGGEIGLERMAKILGVQRCGDAHQAGSDSLLTAELFLKXRSQFGLKPGM 244

Query: 256 CDGFLYGFSNKL 267
            +GFLY  S K+
Sbjct: 245 YEGFLYSLSPKI 255

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAF1A_ARATH4.4e-4439.44Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE... [more]
CAF1H_ARATH4.7e-3841.44Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE... [more]
CAF1E_ARATH6.1e-3839.91Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE... [more]
CAF1C_ARATH3.0e-3740.36Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE... [more]
CAF1D_ARATH6.7e-3740.36Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE... [more]
Match NameE-valueIdentityDescription
A0A0A0LPP0_CUCSA2.9e-11969.13Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270190 PE=4 SV=1[more]
V4TLB7_9ROSI1.5e-5943.43Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016106mg PE=4 SV=1[more]
A0A067ETV6_CITSI1.3e-5843.43Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038950mg PE=4 SV=1[more]
V4S8J5_9ROSI1.8e-5742.70Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013857mg PE=4 SV=1[more]
A0A067JGA6_JATCU2.1e-5344.18Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00595 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449458674|ref|XP_004147072.1|4.1e-11969.13PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis sativus][more]
gi|567911399|ref|XP_006448013.1|2.2e-5943.43hypothetical protein CICLE_v10016106mg [Citrus clementina][more]
gi|641839672|gb|KDO58599.1|1.8e-5843.43hypothetical protein CISIN_1g038950mg [Citrus sinensis][more]
gi|567876007|ref|XP_006430593.1|2.6e-5742.70hypothetical protein CICLE_v10013857mg [Citrus clementina][more]
gi|657958224|ref|XP_008370627.1|1.4e-5546.03PREDICTED: putative CCR4-associated factor 1 homolog 8 [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1
IPR012337RNaseH-like_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla020287Cla020287.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 19..132
score: 1.2
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 8..250
score: 2.0
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 10..249
score: 8.97
NoneNo IPR availablePANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 2..263
score: 6.7
NoneNo IPR availablePANTHERPTHR10797:SF14CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATEDcoord: 2..263
score: 6.7

The following gene(s) are paralogous to this gene:

None