Cla020255 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla020255
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 21607249 .. 21607608 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCCTCTTCTTCTCCCACTTTCCTCTCTAATTCCAACCCTCCTCTTAGCTCCTCCGAATCAGAATTCTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAAGACCTCCTCCCGGACTCCCCCTCGCCGCCCCCCTCCACCGTCGCCGCCCCCCTCCACTGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTTGTCAAACACGCCGCCTTGGCCTACCTTCAGCCCATGCTCACGCCGCCCGTCGCCGGCGATCGTACCTTCATGCGCAGGCTCAAGAAGCACGGTTTCGGATGCATCGAGTGGCTCGCTGCTGTCGTCGCTGGAGTCCGCCGGTGGTAG

mRNA sequence

ATGGAACCCTCTTCTTCTCCCACTTTCCTCTCTAATTCCAACCCTCCTCTTAGCTCCTCCGAATCAGAATTCTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAAGACCTCCTCCCGGACTCCCCCTCGCCGCCCCCCTCCACCGTCGCCGCCCCCCTCCACTGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTTGTCAAACACGCCGCCTTGGCCTACCTTCAGCCCATGCTCACGCCGCCCGTCGCCGGCGATCGTACCTTCATGCGCAGGCTCAAGAAGCACGGTTTCGGATGCATCGAGTGGCTCGCTGCTGTCGTCGCTGGAGTCCGCCGGTGGTAG

Coding sequence (CDS)

ATGGAACCCTCTTCTTCTCCCACTTTCCTCTCTAATTCCAACCCTCCTCTTAGCTCCTCCGAATCAGAATTCTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAAGACCTCCTCCCGGACTCCCCCTCGCCGCCCCCCTCCACCGTCGCCGCCCCCCTCCACTGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTTGTCAAACACGCCGCCTTGGCCTACCTTCAGCCCATGCTCACGCCGCCCGTCGCCGGCGATCGTACCTTCATGCGCAGGCTCAAGAAGCACGGTTTCGGATGCATCGAGTGGCTCGCTGCTGTCGTCGCTGGAGTCCGCCGGTGGTAG

Protein sequence

MEPSSSPTFLSNSNPPLSSSESEFSDIEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPAWDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVVAGVRRW

Homology

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BLAST of Cla020255 vs. TrEMBL
Match: A0A0A0LPR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271440 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.3e-39
Identity = 88/117 (75.21%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 3   PSSSPTFLSNSNPPLSSSESEFSD-IEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPA 62
           PS SPT   + N PLSS E EFSD IEMTPLQSYTSLKDLLPDSPSPPPS  +     PA
Sbjct: 9   PSPSPTSFLSPNHPLSSPELEFSDDIEMTPLQSYTSLKDLLPDSPSPPPSATS-----PA 68

Query: 63  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVVAGVRR 119
           +D+LPIKNPLVKHAALAYLQPMLTPP     TF+R LKKHGFGCIEWLAAVV  VRR
Sbjct: 69  FDQLPIKNPLVKHAALAYLQPMLTPPTTSHPTFLRILKKHGFGCIEWLAAVVHEVRR 120

[Close]

BLAST of Cla020255 vs. TrEMBL
Match: M5VHF3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022032mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-20
Identity = 64/124 (51.61%), Postives = 77/124 (62.10%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q+  YTSLKDLLP SP     T+ +P    +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLKDLLPASPP----TIMSPTQNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKK-------HGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L++       +G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGTNGVGCFSWLGDVVL 134

[Close]

BLAST of Cla020255 vs. TrEMBL
Match: A0A061DXS2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006565 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.1e-18
Identity = 57/115 (49.57%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S S TFL ++        S+ SDIEM  +QS  YTSLKDLLP SP      + +P H  +
Sbjct: 26  SHSSTFLLHNG----FGSSQISDIEMITIQSVSYTSLKDLLPTSPP----AITSPTHNSS 85

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKH---GFGCIEWLAAVV 114
           W E+PIKNPLVKHAALAYLQPM +PP  G++    RLK+      GC+ WL  V+
Sbjct: 86  WHEIPIKNPLVKHAALAYLQPMSSPPEVGEKGLFGRLKERCCGECGCVLWLHDVI 132

[Close]

BLAST of Cla020255 vs. TrEMBL
Match: A0A0D2VZV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G156800 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-16
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1


Query: 20  SESEFSDIEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPAWDELPIKNPLVKHAALAY 79
           S S+FSD+EM  + SYTSLK+LLP S     S   + +H  +W+E+PIKNPLVK AALAY
Sbjct: 110 SSSQFSDVEM--MTSYTSLKELLPASSPTNISPTTSTVHNSSWNEIPIKNPLVKQAALAY 169

Query: 80  LQPMLTPPVAGDRTFMRRLKK---HGFGCIEWLAAVV 114
           LQPM + P AG++ F+ R+K+   +  GC+ W+  VV
Sbjct: 170 LQPMESLPPAGEKGFLERVKENCSNECGCVSWMFDVV 204

[Close]

BLAST of Cla020255 vs. TrEMBL
Match: B9S5I6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0976830 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-14
Identity = 54/113 (47.79%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 9   FLSNSNPPLSSSES-EFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPAWDEL 68
           F++N+ P L+     + SD+E   ++S  YTSLKDLLP SP    ST     H  +W+E+
Sbjct: 28  FINNNIPSLNHHHQYQISDMERISVKSATYTSLKDLLPVSPLSITSTS----HNASWNEI 87

Query: 69  PIKNPLVKHAALAYLQPMLTPPVAGDR-TFMRRLKK----HGFGCIEWLAAVV 114
           PIKNPLVK AALAYLQPM TPP+AG +  F+RRL+        GC  W   +V
Sbjct: 88  PIKNPLVKQAALAYLQPMSTPPIAGGKGLFLRRLRDLICCRECGCFGWFNDLV 136

[Close]

BLAST of Cla020255 vs. NCBI nr
Match: gi|659115776|ref|XP_008457731.1| (PREDICTED: uncharacterized protein LOC103497353 [Cucumis melo])

HSP 1 Score: 172.2 bits (435), Expect = 5.6e-40
Identity = 89/117 (76.07%), Postives = 94/117 (80.34%), Query Frame = 1


Query: 3   PSSSPTFLSNSNPPLSSSESEFSD-IEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPA 62
           PS SPTF  + N PLSS E +FSD IEMTPLQSYTSLKDLLPDSPSPPPS  +     PA
Sbjct: 7   PSPSPTFFLSPNHPLSSPELQFSDDIEMTPLQSYTSLKDLLPDSPSPPPSATS-----PA 66

Query: 63  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVVAGVRR 119
           +DELPIKNPLVKHAALAYLQPMLTPP     TF+R LKKHGFGCIEWLAAVV  VRR
Sbjct: 67  FDELPIKNPLVKHAALAYLQPMLTPPTTAHPTFLRNLKKHGFGCIEWLAAVVDEVRR 118

[Close]

BLAST of Cla020255 vs. NCBI nr
Match: gi|700206832|gb|KGN61951.1| (hypothetical protein Csa_2G271440 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-38
Identity = 88/117 (75.21%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 3   PSSSPTFLSNSNPPLSSSESEFSD-IEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPA 62
           PS SPT   + N PLSS E EFSD IEMTPLQSYTSLKDLLPDSPSPPPS  +     PA
Sbjct: 9   PSPSPTSFLSPNHPLSSPELEFSDDIEMTPLQSYTSLKDLLPDSPSPPPSATS-----PA 68

Query: 63  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVVAGVRR 119
           +D+LPIKNPLVKHAALAYLQPMLTPP     TF+R LKKHGFGCIEWLAAVV  VRR
Sbjct: 69  FDQLPIKNPLVKHAALAYLQPMLTPPTTSHPTFLRILKKHGFGCIEWLAAVVHEVRR 120

[Close]

BLAST of Cla020255 vs. NCBI nr
Match: gi|1009150879|ref|XP_015893260.1| (PREDICTED: zinc-regulated protein 8-like [Ziziphus jujuba])

HSP 1 Score: 108.6 bits (270), Expect = 7.6e-21
Identity = 65/120 (54.17%), Postives = 76/120 (63.33%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SPTFL +    L S E + SDIEM  +QS  YTSLKDLLP  PSPPP+ + +P H  +
Sbjct: 25  SHSPTFLFHDGG-LDSPEFKVSDIEMITIQSLTYTSLKDLLP--PSPPPA-IMSPTHNSS 84

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKH--------GFGCIEWLAAVV 114
           W E+PI+NPLVKHAALAYLQPM TP  A D+    +LK          GFGC  WL  VV
Sbjct: 85  WHEIPIRNPLVKHAALAYLQPMSTPTEADDKGLFGKLKDKCLCGAAGGGFGCFGWLGDVV 140

[Close]

BLAST of Cla020255 vs. NCBI nr
Match: gi|595790959|ref|XP_007199228.1| (hypothetical protein PRUPE_ppa022032mg, partial [Prunus persica])

HSP 1 Score: 106.3 bits (264), Expect = 3.7e-20
Identity = 64/124 (51.61%), Postives = 77/124 (62.10%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q+  YTSLKDLLP SP     T+ +P    +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLKDLLPASPP----TIMSPTQNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKK-------HGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L++       +G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGTNGVGCFSWLGDVVL 134

[Close]

BLAST of Cla020255 vs. NCBI nr
Match: gi|645260966|ref|XP_008236068.1| (PREDICTED: uncharacterized protein LOC103334865 [Prunus mume])

HSP 1 Score: 105.1 bits (261), Expect = 8.4e-20
Identity = 63/124 (50.81%), Postives = 77/124 (62.10%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q+  YTSL+DLLP SP     T+ +P    +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLRDLLPASPP----TIMSPTQNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLK-------KHGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L+       ++G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCGGENGLGCFAWLGDVVL 134

The following BLAST results are available for this feature:

BLAST of Cla020255 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPR9_CUCSA	7.3e-39	75.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271440 PE=4 SV=1	[more]
M5VHF3_PRUPE	2.6e-20	51.61	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022032mg PE=4 S...	[more]
A0A061DXS2_THECC	7.1e-18	49.57	Uncharacterized protein OS=Theobroma cacao GN=TCM_006565 PE=4 SV=1	[more]
A0A0D2VZV0_GOSRA	1.8e-16	50.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G156800 PE=4 SV=1	[more]
B9S5I6_RICCO	1.6e-14	47.79	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0976830 PE=4 SV=1	[more]

BLAST of Cla020255 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115776\|ref\|XP_008457731.1\|	5.6e-40	76.07	PREDICTED: uncharacterized protein LOC103497353 [Cucumis melo]	[more]
gi\|700206832\|gb\|KGN61951.1\|	1.0e-38	75.21	hypothetical protein Csa_2G271440 [Cucumis sativus]	[more]
gi\|1009150879\|ref\|XP_015893260.1\|	7.6e-21	54.17	PREDICTED: zinc-regulated protein 8-like [Ziziphus jujuba]	[more]
gi\|595790959\|ref\|XP_007199228.1\|	3.7e-20	51.61	hypothetical protein PRUPE_ppa022032mg, partial [Prunus persica]	[more]
gi\|645260966\|ref\|XP_008236068.1\|	8.4e-20	50.81	PREDICTED: uncharacterized protein LOC103334865 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla020255	Cla020255.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34569	FAMILY NOT NAMED	coord: 17..98 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla020255	Cla97C02G037780	Watermelon (97103) v2	wmwmbB316
Cla020255	Csa2G271440	Cucumber (Chinese Long) v2	cuwmB140
Cla020255	ClCG02G012110	Watermelon (Charleston Gray)	wcgwmB197
Cla020255	CSPI02G13750	Wild cucumber (PI 183967)	cpiwmB142
Cla020255	CmaCh02G002750	Cucurbita maxima (Rimu)	cmawmB585
Cla020255	CmaCh20G007350	Cucurbita maxima (Rimu)	cmawmB534
Cla020255	CmoCh20G007320	Cucurbita moschata (Rifu)	cmowmB523
Cla020255	Lsi10G005110	Bottle gourd (USVL1VR-Ls)	lsiwmB065
Cla020255	Cp4.1LG16g03310	Cucurbita pepo (Zucchini)	cpewmB289
Cla020255	MELO3C034691.2	Melon (DHL92) v3.6.1	medwmB116
Cla020255	Carg16157	Silver-seed gourd	carwmB0338
Cla020255	Bhi10G001433	Wax gourd	wgowmB387

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla020255	Melon (DHL92) v3.5.1	mewmB120
Cla020255	Cucumber (Gy14) v2	cgybwmB133
Cla020255	Silver-seed gourd	carwmB0808
Cla020255	Cucumber (Chinese Long) v3	cucwmB153
Cla020255	Wax gourd	wgowmB399
Cla020255	Cucumber (Gy14) v1	cgywmB437