CmaCh02G002750 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G002750
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr02 : 1263343 .. 1266070 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCCTCTTCAATCCTACACAAGCCTCAAGGACCTCCTCCTCGACACCCCCTCTCCGCCGCCCTCCACCGCCTCCGCCTGGAACGAACTCCCCATCAAAAACCCACTCCTCAAACACGCCGCCTTGGCCTACCTACACCTCACTCTCACACCGCCAGCCACCACCGATGGCGGCTTCATGCGGAATCTCGTGAACCATGGACACAGATGCGTCCAGTGGATCGGCGCCGTCGTTATTGCCGTCGCCAGAAATCTCTCCGGCCGTGGAGTCCGACGGTCGGAGTGCAGCAGCTTCCGATGAACAAAACCTTAAACCATTTTTTTTTATTTAAAAAAATATCTATTTGTTAGATTGAATGTCTCATTGACGTGACATTCTAAATCATATATTTATAGATGTGTATAATGAATATTACATTCTAAATCACTAGATTTGGTAGCAAACCAGTAAATCACTAGATTTAGTAGCAAACCAGTAAATCACTAGATTTAGTAGCAAACCAGTAAATCACTAGATTTCGTAGCAAACCAGTAAATCACTAGATTTCGTAGCAAACCAGTAAATCACTAGATTTCGTAGCAAACCAGTAAATCACTAGATTTGGTAGCAAACCAGTAAATCACTAGATTTGGTAGCAAACCAGTAAATCACTAGATTTGGTAGCAAACCAGTAAATCACTAGATTTGGTAACAAACCAGTAAAATTGTGTATTTTACTCATCTATAAATAGAGTAAAATATAGTTTAGTTAAAGGGTATATTTCCAGATATCATGATGTATCGGTATTTTTCATAATCTATTTTATTAATGAATCTGCAGAATAGATACGCATACAAATTCATGATGTGCCAAGAACCAGATTTGAACTGGTGACACGAGGATTTTCAGTCCTCTGCTCTACCAACTGCGCCTAAAATTGCTAAAAGAAGGAGCTGGCAATGACTTTGTCATGATATTGGCGAGCTGATCCTTGGAAGAAATGAGTTGAACATCAAGCTGACGAGTCGATACTCGTTCACGAACGAAGTGATAATCAACTTCAACATGCTTCGTGTTACGCAATGCAAGAGGACGAGTAGCAGTATTAATTAGAGAATGACCAGTATGCAAAACACGCAAACCTGCTCCATTGTCGACTTGAGCTTGTTCGCCTCCATGATAACGTTCACGCACAGTGAGACGATCTAGGTCACTGGTGATATGATCTGTAGCGCATGTGTCGCTGTACCAATTTGGGTCAATCTTGTAAGAGGAAGTAGCCGCCAGTGTCGTAGGAGGAGCAGAAGAAGGTTCATCTTGATAAGACTCATCCATCCTATGCCAGCAGCGGATAGCAGTATGCCCCACTTTGCCACAGATCTGGCAGGAAGGACGAGTAGAAGGGCCACGACGATCACCAGCAGGACGAGAGGGTGCATAACCTTGAGAACGACCACGACCACGACCACGATCCCTACACCCACGATTCTTATGCTGACCACCACGACCAGCATAATTGGCAGAAGATCCAAGATTTAACTGAAGTTCAGCCTGGTGTTGTAGTTGGCGAGCTTCATACGTCATTAAATGTGCGAACACATCATCAAGCGTGAGGGATTCACTCTTGGTAGTGATTGAGGTGACAAAGGGATCATAGTCAGGGCCAAGACCAGCGAGAAGATACGCGATTACATCATCATCCTGCAAGGCAGAGTTGGCGGCGGCCAACTCGGTGGCTAGCCCTTTGATCTTGCGAAAATAATTTGCAGCAGATTGATCTCGTTTCTTGGACGTGGCGAGCTCAACACGAATCTGAGTAGTGCGAGCACGAGTTGATGACGAAAACATCCGTTGCAAGGTATCCCACGCCTCCTTAGACGTAGTAGCGGCAACCACATCGTAAAGAATCTCCTCAGACATGGAGGAGAGAAGACCGCTAAGAACATATTGATCCTGATCATACCACTGATTATAGACCGGATTAGAGACCAACTCAGCACCAGCCGTAGTTGAGGAAGGGACCAACTTGGCAGGTGCGGCATTGGTGCCATCGAGGTAGCCCATAAGCTTCGTACTCTGTAGGTAGGGGAGGAGCTGGTCGCACCATATGATGAAGTTGTTTTTGGTTAGACGAATTGTGACAGCATGGTGTAGAGAGATTGGGCCAAAGGTCCCCATGGTAGTTGAGACGGTGTTGGAGATGGTGGATGGAGAGGAGGAGGAAGATATGGTAGACATTTAAAAAATAAACCTTTGTCTCTAATACCATGTCAAGTTGAATGGCTCAATAATCTAGAGTCACGACCTTATGTATTTATAGATGTATATAATGAAGATTACATTCTAAATCATAGATTTAGTAACAAAGATTTGGTAACAAACGAGTAAATCATAGATAGTAAATCATAGATTTGGTAACAAACGAGTAAATCATAGATTTGGTAACAAACTAGTAAATCATAGATTTGGTAACAAAGGAGTAAATCATAGATTTGGTAACAAACGAGTAAATCATAGATTTGGTAACAAACTAGTAAATCACTCATTATCTTACTATACACAAATATGATCTATTCTACCTTTAACAAAGGTAACTGTCTTTATTTTCAGTGGGGTGACGTGTAATTATGTGGACGCATACGAATGGTGAAAATTATTCTGCTTTGTTTGGTAAAATATTTATAATGTTTTTAGACTTTTGATTTTTTTAATAAAATAAATAAAAGGAAACAAATGATTGACTAG

mRNA sequence

ATGACCCCTCTTCAATCCTACACAAGCCTCAAGGACCTCCTCCTCGACACCCCCTCTCCGCCGCCCTCCACCGCCTCCGCCTGGAACGAACTCCCCATCAAAAACCCACTCCTCAAACACGCCGCCTTGGCCTACCTACACCTCACTCTCACACCGCCAGCCACCACCGATGGCGGCTTCATGCGGAATCTCGTGAACCATGGACACAGATGCGTCCAGTGGATCGGCGCCGTCGTTATTGCCGTCGCCAGAAATCTCTCCGGCCGTGGAGTCCGACGGAAACAAATGATTGACTAG

Coding sequence (CDS)

ATGACCCCTCTTCAATCCTACACAAGCCTCAAGGACCTCCTCCTCGACACCCCCTCTCCGCCGCCCTCCACCGCCTCCGCCTGGAACGAACTCCCCATCAAAAACCCACTCCTCAAACACGCCGCCTTGGCCTACCTACACCTCACTCTCACACCGCCAGCCACCACCGATGGCGGCTTCATGCGGAATCTCGTGAACCATGGACACAGATGCGTCCAGTGGATCGGCGCCGTCGTTATTGCCGTCGCCAGAAATCTCTCCGGCCGTGGAGTCCGACGGAAACAAATGATTGACTAG

Protein sequence

MTPLQSYTSLKDLLLDTPSPPPSTASAWNELPIKNPLLKHAALAYLHLTLTPPATTDGGFMRNLVNHGHRCVQWIGAVVIAVARNLSGRGVRRKQMID
Homology
[Close]
BLAST of CmaCh02G002750 vs. TrEMBL
Match: A0A0A0LPR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271440 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-21
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 1 

Query: 1   MTPLQSYTSLKDLLLDTPSPPPS-TASAWNELPIKNPLLKHAALAYLHLTLTPPATTDGG 60
           MTPLQSYTSLKDLL D+PSPPPS T+ A+++LPIKNPL+KHAALAYL   LTPP T+   
Sbjct: 36  MTPLQSYTSLKDLLPDSPSPPPSATSPAFDQLPIKNPLVKHAALAYLQPMLTPPTTSHPT 95

Query: 61  FMRNLVNHGHRCVQWIGAVVIAVAR 85
           F+R L  HG  C++W+ AVV  V R
Sbjct: 96  FLRILKKHGFGCIEWLAAVVHEVRR 120

[Close]
BLAST of CmaCh02G002750 vs. TrEMBL
Match: M5VHF3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022032mg PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.1e-11
Identity = 44/94 (46.81%), Postives = 57/94 (60.64%), Query Frame = 1 

Query: 6   SYTSLKDLLLDTPSPP----PSTASAWNELPIKNPLLKHAALAYLHLTLTPPATTDGGFM 65
           +YTSLKDLL    SPP    P+  S+W+E+PIKNPL+KHAALAYL    TPP   D G +
Sbjct: 47  TYTSLKDLL--PASPPTIMSPTQNSSWHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLL 106

Query: 66  RNL-------VNHGHRCVQWIGAVVIAVARNLSG 89
           R L         +G  C  W+G VV++  R++ G
Sbjct: 107 RMLREKCLCEGTNGVGCFSWLGDVVLSGVRDVFG 138

[Close]
BLAST of CmaCh02G002750 vs. TrEMBL
Match: A0A067KE83_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13075 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.4e-08
Identity = 38/90 (42.22%), Postives = 50/90 (55.56%), Query Frame = 1 

Query: 6  SYTSLKDLLLDTP---SPPPSTASAWNELPIKNPLLKHAALAYLHLTLTPPATTDGGFMR 65
          +YTSLKDLL  +P   S P    S+WNE+PIKNPL+K AALAYL    +PP   D G   
Sbjct: 8  TYTSLKDLLPASPPTISSPTQHNSSWNEIPIKNPLVKQAALAYLQPMSSPPEIGDKGLFG 67

Query: 66 NLVNHGH---RCVQWIGAVVIAVARNLSGR 90
           L +  +    C +W   VV+     + G+
Sbjct: 68 RLRDACYVECGCFEWFNDVVLMGITEIFGK 97

[Close]
BLAST of CmaCh02G002750 vs. TrEMBL
Match: A0A061DXS2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006565 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.6e-07
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 1 

Query: 6   SYTSLKDLLLDTPSP--PPSTASAWNELPIKNPLLKHAALAYLHLTLTPPATTDGGFMRN 65
           SYTSLKDLL  +P     P+  S+W+E+PIKNPL+KHAALAYL    +PP   + G    
Sbjct: 54  SYTSLKDLLPTSPPAITSPTHNSSWHEIPIKNPLVKHAALAYLQPMSSPPEVGEKGLFGR 113

Query: 66  LVNH---GHRCVQWIGAVV 80
           L         CV W+  V+
Sbjct: 114 LKERCCGECGCVLWLHDVI 132

[Close]
BLAST of CmaCh02G002750 vs. TrEMBL
Match: A0A0D2VZV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G156800 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-06
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 1 

Query: 4   LQSYTSLKDLL-LDTP---SPPPSTA--SAWNELPIKNPLLKHAALAYLHLTLTPPATTD 63
           + SYTSLK+LL   +P   SP  ST   S+WNE+PIKNPL+K AALAYL    + P   +
Sbjct: 120 MTSYTSLKELLPASSPTNISPTTSTVHNSSWNEIPIKNPLVKQAALAYLQPMESLPPAGE 179

Query: 64  GGFMRNLVNHGHR---CVQWIGAVVIAVARNL 87
            GF+  +  +      CV W+  VV+  A+ +
Sbjct: 180 KGFLERVKENCSNECGCVSWMFDVVLKNAKKV 211

[Close]
BLAST of CmaCh02G002750 vs. NCBI nr
Match: gi|659115776|ref|XP_008457731.1| (PREDICTED: uncharacterized protein LOC103497353 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-22
Identity = 57/85 (67.06%), Postives = 66/85 (77.65%), Query Frame = 1 

Query: 1   MTPLQSYTSLKDLLLDTPSPPPS-TASAWNELPIKNPLLKHAALAYLHLTLTPPATTDGG 60
           MTPLQSYTSLKDLL D+PSPPPS T+ A++ELPIKNPL+KHAALAYL   LTPP T    
Sbjct: 34  MTPLQSYTSLKDLLPDSPSPPPSATSPAFDELPIKNPLVKHAALAYLQPMLTPPTTAHPT 93

Query: 61  FMRNLVNHGHRCVQWIGAVVIAVAR 85
           F+RNL  HG  C++W+ AVV  V R
Sbjct: 94  FLRNLKKHGFGCIEWLAAVVDEVRR 118

[Close]
BLAST of CmaCh02G002750 vs. NCBI nr
Match: gi|700206832|gb|KGN61951.1| (hypothetical protein Csa_2G271440 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 4.8e-21
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 1 

Query: 1   MTPLQSYTSLKDLLLDTPSPPPS-TASAWNELPIKNPLLKHAALAYLHLTLTPPATTDGG 60
           MTPLQSYTSLKDLL D+PSPPPS T+ A+++LPIKNPL+KHAALAYL   LTPP T+   
Sbjct: 36  MTPLQSYTSLKDLLPDSPSPPPSATSPAFDQLPIKNPLVKHAALAYLQPMLTPPTTSHPT 95

Query: 61  FMRNLVNHGHRCVQWIGAVVIAVAR 85
           F+R L  HG  C++W+ AVV  V R
Sbjct: 96  FLRILKKHGFGCIEWLAAVVHEVRR 120

[Close]
BLAST of CmaCh02G002750 vs. NCBI nr
Match: gi|595790959|ref|XP_007199228.1| (hypothetical protein PRUPE_ppa022032mg, partial [Prunus persica])

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-11
Identity = 44/94 (46.81%), Postives = 57/94 (60.64%), Query Frame = 1 

Query: 6   SYTSLKDLLLDTPSPP----PSTASAWNELPIKNPLLKHAALAYLHLTLTPPATTDGGFM 65
           +YTSLKDLL    SPP    P+  S+W+E+PIKNPL+KHAALAYL    TPP   D G +
Sbjct: 47  TYTSLKDLL--PASPPTIMSPTQNSSWHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLL 106

Query: 66  RNL-------VNHGHRCVQWIGAVVIAVARNLSG 89
           R L         +G  C  W+G VV++  R++ G
Sbjct: 107 RMLREKCLCEGTNGVGCFSWLGDVVLSGVRDVFG 138

[Close]
BLAST of CmaCh02G002750 vs. NCBI nr
Match: gi|645260966|ref|XP_008236068.1| (PREDICTED: uncharacterized protein LOC103334865 [Prunus mume])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-10
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1 

Query: 6   SYTSLKDLLLDTPSPP----PSTASAWNELPIKNPLLKHAALAYLHLTLTPPATTDGGFM 65
           +YTSL+DLL    SPP    P+  S+W+E+PIKNPL+KHAALAYL    TPP   D G +
Sbjct: 47  TYTSLRDLL--PASPPTIMSPTQNSSWHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLL 106

Query: 66  RNL-------VNHGHRCVQWIGAVVIAVARNLSG 89
           R L         +G  C  W+G VV++  R++ G
Sbjct: 107 RMLREKCLCGGENGLGCFAWLGDVVLSGVRDVFG 138

[Close]
BLAST of CmaCh02G002750 vs. NCBI nr
Match: gi|694329795|ref|XP_009355623.1| (PREDICTED: uncharacterized protein LOC103946604 [Pyrus x bretschneideri])

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-09
Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = 1 

Query: 6   SYTSLKDLL---LDTPSPPPSTASAWN-ELPIKNPLLKHAALAYLHLTLTPPATTDGGFM 65
           SYTSLKDLL   L      P   S+W+ E+PIKNPL+KHAALAYL    TPP   D G +
Sbjct: 92  SYTSLKDLLPASLPLTIMSPIHNSSWHDEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLL 151

Query: 66  RNLVNHGH---RCVQWIGAVVIAVARNLSG 89
           R +    H    C+ W+G VV+   R++ G
Sbjct: 152 RMVGEKCHCELGCLAWVGDVVLKTVRDVFG 181

The following BLAST results are available for this feature:
BLAST of CmaCh02G002750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh02G002750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPR9_CUCSA3.3e-2164.71Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271440 PE=4 SV=1[more]
M5VHF3_PRUPE3.1e-1146.81Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022032mg PE=4 S... [more]
A0A067KE83_JATCU9.4e-0842.22Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13075 PE=4 SV=1[more]
A0A061DXS2_THECC3.6e-0745.57Uncharacterized protein OS=Theobroma cacao GN=TCM_006565 PE=4 SV=1[more]
A0A0D2VZV0_GOSRA1.8e-0642.39Uncharacterized protein OS=Gossypium raimondii GN=B456_012G156800 PE=4 SV=1[more]
BLAST of CmaCh02G002750 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh02G002750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115776|ref|XP_008457731.1|2.5e-2267.06PREDICTED: uncharacterized protein LOC103497353 [Cucumis melo][more]
gi|700206832|gb|KGN61951.1|4.8e-2164.71hypothetical protein Csa_2G271440 [Cucumis sativus][more]
gi|595790959|ref|XP_007199228.1|4.5e-1146.81hypothetical protein PRUPE_ppa022032mg, partial [Prunus persica][more]
gi|645260966|ref|XP_008236068.1|1.3e-1045.74PREDICTED: uncharacterized protein LOC103334865 [Prunus mume][more]
gi|694329795|ref|XP_009355623.1|2.5e-0946.67PREDICTED: uncharacterized protein LOC103946604 [Pyrus x bretschneideri][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G002750.1CmaCh02G002750.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G002750Cla020255Watermelon (97103) v1cmawmB585
CmaCh02G002750Csa2G271440Cucumber (Chinese Long) v2cmacuB583
CmaCh02G002750ClCG02G012110Watermelon (Charleston Gray)cmawcgB529
CmaCh02G002750CSPI02G13750Wild cucumber (PI 183967)cmacpiB588
CmaCh02G002750Carg16157Silver-seed gourdcarcmaB0490
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh02G002750CmaCh20G007350Cucurbita maxima (Rimu)cmacmaB478
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G002750Cucurbita maxima (Rimu)cmacmaB162
CmaCh02G002750Cucurbita maxima (Rimu)cmacmaB448
CmaCh02G002750Cucumber (Gy14) v1cgycmaB1029
CmaCh02G002750Cucurbita moschata (Rifu)cmacmoB575
CmaCh02G002750Cucurbita moschata (Rifu)cmacmoB596
CmaCh02G002750Cucurbita moschata (Rifu)cmacmoB614
CmaCh02G002750Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G002750Wild cucumber (PI 183967)cmacpiB649
CmaCh02G002750Cucumber (Chinese Long) v2cmacuB642
CmaCh02G002750Melon (DHL92) v3.5.1cmameB565
CmaCh02G002750Watermelon (Charleston Gray)cmawcgB547
CmaCh02G002750Watermelon (97103) v1cmawmB597
CmaCh02G002750Cucurbita pepo (Zucchini)cmacpeB613
CmaCh02G002750Cucurbita pepo (Zucchini)cmacpeB621
CmaCh02G002750Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G002750Bottle gourd (USVL1VR-Ls)cmalsiB558
CmaCh02G002750Cucumber (Gy14) v2cgybcmaB959
CmaCh02G002750Melon (DHL92) v3.6.1cmamedB645
CmaCh02G002750Silver-seed gourdcarcmaB1124
CmaCh02G002750Cucumber (Chinese Long) v3cmacucB0766
CmaCh02G002750Watermelon (97103) v2cmawmbB634
CmaCh02G002750Wax gourdcmawgoB0742