ClCG02G012110 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G012110
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 25416713 .. 25417072 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCCTCTTCTTCTCCCACTTTCCTCTCTAATTCCAACCCTCCTCTTAGCTCCTCCGAATCAGAATTCTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAAGACCTCCTCCCGGACTCCCCCTCGCCGCCCCCCTCCACCGTCGCCGCCCCCCTCCACTGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTTGTCAAACACGCCGCCTTGGCCTACCTTCAGCCCATGCTCACGCCGCCCGTCGCCGGCGATCGTACCTTCATGCGCAGGCTCAAGAAGCACGGTTTCGGATGCATCGAGTGGCTCGCTGCTGTCGTCGCTGGAGTCCGCCGGTGGTAG

mRNA sequence

ATGGAACCCTCTTCTTCTCCCACTTTCCTCTCTAATTCCAACCCTCCTCTTAGCTCCTCCGAATCAGAATTCTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAAGACCTCCTCCCGGACTCCCCCTCGCCGCCCCCCTCCACCGTCGCCGCCCCCCTCCACTGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTTGTCAAACACGCCGCCTTGGCCTACCTTCAGCCCATGCTCACGCCGCCCGTCGCCGGCGATCGTACCTTCATGCGCAGGCTCAAGAAGCACGGTTTCGGATGCATCGAGTGGCTCGCTGCTGTCGTCGCTGGAGTCCGCCGGTGGTAG

Coding sequence (CDS)

ATGGAACCCTCTTCTTCTCCCACTTTCCTCTCTAATTCCAACCCTCCTCTTAGCTCCTCCGAATCAGAATTCTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAAGACCTCCTCCCGGACTCCCCCTCGCCGCCCCCCTCCACCGTCGCCGCCCCCCTCCACTGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTTGTCAAACACGCCGCCTTGGCCTACCTTCAGCCCATGCTCACGCCGCCCGTCGCCGGCGATCGTACCTTCATGCGCAGGCTCAAGAAGCACGGTTTCGGATGCATCGAGTGGCTCGCTGCTGTCGTCGCTGGAGTCCGCCGGTGGTAG

Protein sequence

MEPSSSPTFLSNSNPPLSSSESEFSDIEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPAWDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVVAGVRRW

Homology

[Close]

BLAST of ClCG02G012110 vs. TrEMBL
Match: A0A0A0LPR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271440 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.3e-39
Identity = 88/117 (75.21%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 3   PSSSPTFLSNSNPPLSSSESEFSD-IEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPA 62
           PS SPT   + N PLSS E EFSD IEMTPLQSYTSLKDLLPDSPSPPPS  +     PA
Sbjct: 9   PSPSPTSFLSPNHPLSSPELEFSDDIEMTPLQSYTSLKDLLPDSPSPPPSATS-----PA 68

Query: 63  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVVAGVRR 119
           +D+LPIKNPLVKHAALAYLQPMLTPP     TF+R LKKHGFGCIEWLAAVV  VRR
Sbjct: 69  FDQLPIKNPLVKHAALAYLQPMLTPPTTSHPTFLRILKKHGFGCIEWLAAVVHEVRR 120

[Close]

BLAST of ClCG02G012110 vs. TrEMBL
Match: M5VHF3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022032mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-20
Identity = 64/124 (51.61%), Postives = 77/124 (62.10%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q+  YTSLKDLLP SP     T+ +P    +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLKDLLPASPP----TIMSPTQNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKK-------HGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L++       +G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGTNGVGCFSWLGDVVL 134

[Close]

BLAST of ClCG02G012110 vs. TrEMBL
Match: A0A061DXS2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006565 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.1e-18
Identity = 57/115 (49.57%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S S TFL ++        S+ SDIEM  +QS  YTSLKDLLP SP      + +P H  +
Sbjct: 26  SHSSTFLLHNG----FGSSQISDIEMITIQSVSYTSLKDLLPTSPP----AITSPTHNSS 85

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKH---GFGCIEWLAAVV 114
           W E+PIKNPLVKHAALAYLQPM +PP  G++    RLK+      GC+ WL  V+
Sbjct: 86  WHEIPIKNPLVKHAALAYLQPMSSPPEVGEKGLFGRLKERCCGECGCVLWLHDVI 132

[Close]

BLAST of ClCG02G012110 vs. TrEMBL
Match: A0A0D2VZV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G156800 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-16
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1


Query: 20  SESEFSDIEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPAWDELPIKNPLVKHAALAY 79
           S S+FSD+EM  + SYTSLK+LLP S     S   + +H  +W+E+PIKNPLVK AALAY
Sbjct: 110 SSSQFSDVEM--MTSYTSLKELLPASSPTNISPTTSTVHNSSWNEIPIKNPLVKQAALAY 169

Query: 80  LQPMLTPPVAGDRTFMRRLKK---HGFGCIEWLAAVV 114
           LQPM + P AG++ F+ R+K+   +  GC+ W+  VV
Sbjct: 170 LQPMESLPPAGEKGFLERVKENCSNECGCVSWMFDVV 204

[Close]

BLAST of ClCG02G012110 vs. TrEMBL
Match: B9S5I6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0976830 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-14
Identity = 54/113 (47.79%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 9   FLSNSNPPLSSSES-EFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPAWDEL 68
           F++N+ P L+     + SD+E   ++S  YTSLKDLLP SP    ST     H  +W+E+
Sbjct: 28  FINNNIPSLNHHHQYQISDMERISVKSATYTSLKDLLPVSPLSITSTS----HNASWNEI 87

Query: 69  PIKNPLVKHAALAYLQPMLTPPVAGDR-TFMRRLKK----HGFGCIEWLAAVV 114
           PIKNPLVK AALAYLQPM TPP+AG +  F+RRL+        GC  W   +V
Sbjct: 88  PIKNPLVKQAALAYLQPMSTPPIAGGKGLFLRRLRDLICCRECGCFGWFNDLV 136

[Close]

BLAST of ClCG02G012110 vs. TAIR10
Match: AT3G52520.1 (AT3G52520.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 7.3e-06
Identity = 29/70 (41.43%), Postives = 39/70 (55.71%), Query Frame = 1


Query: 31  PLQSYTSLKDLLPDSPSP--PPSTVAAPLHCPAWDELPIKNPLVKHAALAYLQPMLTPPV 90
           PL  YTSLKD+LP S +    P+   A     +   + I+N LVK AA +YLQP  TP  
Sbjct: 37  PLPCYTSLKDILPSSSTTVDSPAISFAVASAVSGPTITIRNRLVKQAACSYLQPS-TPTP 96

Query: 91  AGDRTFMRRL 99
           + + +F+RR+
Sbjct: 97  SSNPSFLRRV 105

[Close]

BLAST of ClCG02G012110 vs. NCBI nr
Match: gi|659115776|ref|XP_008457731.1| (PREDICTED: uncharacterized protein LOC103497353 [Cucumis melo])

HSP 1 Score: 172.2 bits (435), Expect = 5.6e-40
Identity = 89/117 (76.07%), Postives = 94/117 (80.34%), Query Frame = 1


Query: 3   PSSSPTFLSNSNPPLSSSESEFSD-IEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPA 62
           PS SPTF  + N PLSS E +FSD IEMTPLQSYTSLKDLLPDSPSPPPS  +     PA
Sbjct: 7   PSPSPTFFLSPNHPLSSPELQFSDDIEMTPLQSYTSLKDLLPDSPSPPPSATS-----PA 66

Query: 63  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVVAGVRR 119
           +DELPIKNPLVKHAALAYLQPMLTPP     TF+R LKKHGFGCIEWLAAVV  VRR
Sbjct: 67  FDELPIKNPLVKHAALAYLQPMLTPPTTAHPTFLRNLKKHGFGCIEWLAAVVDEVRR 118

[Close]

BLAST of ClCG02G012110 vs. NCBI nr
Match: gi|700206832|gb|KGN61951.1| (hypothetical protein Csa_2G271440 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-38
Identity = 88/117 (75.21%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 3   PSSSPTFLSNSNPPLSSSESEFSD-IEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPA 62
           PS SPT   + N PLSS E EFSD IEMTPLQSYTSLKDLLPDSPSPPPS  +     PA
Sbjct: 9   PSPSPTSFLSPNHPLSSPELEFSDDIEMTPLQSYTSLKDLLPDSPSPPPSATS-----PA 68

Query: 63  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVVAGVRR 119
           +D+LPIKNPLVKHAALAYLQPMLTPP     TF+R LKKHGFGCIEWLAAVV  VRR
Sbjct: 69  FDQLPIKNPLVKHAALAYLQPMLTPPTTSHPTFLRILKKHGFGCIEWLAAVVHEVRR 120

[Close]

BLAST of ClCG02G012110 vs. NCBI nr
Match: gi|1009150879|ref|XP_015893260.1| (PREDICTED: zinc-regulated protein 8-like [Ziziphus jujuba])

HSP 1 Score: 108.6 bits (270), Expect = 7.6e-21
Identity = 65/120 (54.17%), Postives = 76/120 (63.33%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SPTFL +    L S E + SDIEM  +QS  YTSLKDLLP  PSPPP+ + +P H  +
Sbjct: 25  SHSPTFLFHDGG-LDSPEFKVSDIEMITIQSLTYTSLKDLLP--PSPPPA-IMSPTHNSS 84

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKH--------GFGCIEWLAAVV 114
           W E+PI+NPLVKHAALAYLQPM TP  A D+    +LK          GFGC  WL  VV
Sbjct: 85  WHEIPIRNPLVKHAALAYLQPMSTPTEADDKGLFGKLKDKCLCGAAGGGFGCFGWLGDVV 140

[Close]

BLAST of ClCG02G012110 vs. NCBI nr
Match: gi|595790959|ref|XP_007199228.1| (hypothetical protein PRUPE_ppa022032mg, partial [Prunus persica])

HSP 1 Score: 106.3 bits (264), Expect = 3.7e-20
Identity = 64/124 (51.61%), Postives = 77/124 (62.10%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q+  YTSLKDLLP SP     T+ +P    +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLKDLLPASPP----TIMSPTQNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKK-------HGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L++       +G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGTNGVGCFSWLGDVVL 134

[Close]

BLAST of ClCG02G012110 vs. NCBI nr
Match: gi|645260966|ref|XP_008236068.1| (PREDICTED: uncharacterized protein LOC103334865 [Prunus mume])

HSP 1 Score: 105.1 bits (261), Expect = 8.4e-20
Identity = 63/124 (50.81%), Postives = 77/124 (62.10%), Query Frame = 1


Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQS--YTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q+  YTSL+DLLP SP     T+ +P    +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLRDLLPASPP----TIMSPTQNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLK-------KHGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L+       ++G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCGGENGLGCFAWLGDVVL 134

The following BLAST results are available for this feature:

BLAST of ClCG02G012110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPR9_CUCSA	7.3e-39	75.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271440 PE=4 SV=1	[more]
M5VHF3_PRUPE	2.6e-20	51.61	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022032mg PE=4 S...	[more]
A0A061DXS2_THECC	7.1e-18	49.57	Uncharacterized protein OS=Theobroma cacao GN=TCM_006565 PE=4 SV=1	[more]
A0A0D2VZV0_GOSRA	1.8e-16	50.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G156800 PE=4 SV=1	[more]
B9S5I6_RICCO	1.6e-14	47.79	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0976830 PE=4 SV=1	[more]

BLAST of ClCG02G012110 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52520.1	7.3e-06	41.43	unknown protein	[more]

BLAST of ClCG02G012110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115776\|ref\|XP_008457731.1\|	5.6e-40	76.07	PREDICTED: uncharacterized protein LOC103497353 [Cucumis melo]	[more]
gi\|700206832\|gb\|KGN61951.1\|	1.0e-38	75.21	hypothetical protein Csa_2G271440 [Cucumis sativus]	[more]
gi\|1009150879\|ref\|XP_015893260.1\|	7.6e-21	54.17	PREDICTED: zinc-regulated protein 8-like [Ziziphus jujuba]	[more]
gi\|595790959\|ref\|XP_007199228.1\|	3.7e-20	51.61	hypothetical protein PRUPE_ppa022032mg, partial [Prunus persica]	[more]
gi\|645260966\|ref\|XP_008236068.1\|	8.4e-20	50.81	PREDICTED: uncharacterized protein LOC103334865 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G012110.1	ClCG02G012110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34569	FAMILY NOT NAMED	coord: 17..98 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G012110	Csa2G271440	Cucumber (Chinese Long) v2	cuwcgB119
ClCG02G012110	Cla020255	Watermelon (97103) v1	wcgwmB197
ClCG02G012110	Cla97C02G037780	Watermelon (97103) v2	wcgwmbB138
ClCG02G012110	Bhi10G001433	Wax gourd	wcgwgoB291
ClCG02G012110	CSPI02G13750	Wild cucumber (PI 183967)	cpiwcgB125
ClCG02G012110	CmaCh20G007350	Cucurbita maxima (Rimu)	cmawcgB490
ClCG02G012110	CmaCh02G002750	Cucurbita maxima (Rimu)	cmawcgB529
ClCG02G012110	CmoCh20G007320	Cucurbita moschata (Rifu)	cmowcgB492
ClCG02G012110	Lsi10G005110	Bottle gourd (USVL1VR-Ls)	lsiwcgB045
ClCG02G012110	Cp4.1LG16g03310	Cucurbita pepo (Zucchini)	cpewcgB256
ClCG02G012110	MELO3C034691.2	Melon (DHL92) v3.6.1	medwcgB102
ClCG02G012110	Carg16157	Silver-seed gourd	carwcgB0339

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G012110	Cucumber (Gy14) v1	cgywcgB409
ClCG02G012110	Melon (DHL92) v3.5.1	mewcgB106
ClCG02G012110	Cucumber (Gy14) v2	cgybwcgB115
ClCG02G012110	Silver-seed gourd	carwcgB0780
ClCG02G012110	Cucumber (Chinese Long) v3	cucwcgB134
ClCG02G012110	Wax gourd	wcgwgoB302