CmoCh20G007320 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G007320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	COPII coat assembly protein SEC16, putative
Location	Cmo_Chr20 : 3641412 .. 3641774 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAATCCTCTCCCACTTTCCTCTCCTCCGATCGACTTCTCAGCTCATCGGAATTAGAATTTTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAGGACCTCCTGCCGGATACCCCCTCGCCGCCTACCTCCGCCGCCTACCCTCTCCAATGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTCGTCAAACACGCCGCCTTGGCCTACCTGCAGCCGATGCTCACCCCGCCAGCCACCGGCGAACGTAGCTTTATGCGCAGGCTCAAGAAGCACGGATTCGGATGCATCGAGTGGCTCGTCGCCGTCATCGGAGAACTCTCCGGTGGAGTCCGCCGGTGGTAA

mRNA sequence

ATGGAAGAATCCTCTCCCACTTTCCTCTCCTCCGATCGACTTCTCAGCTCATCGGAATTAGAATTTTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAGGACCTCCTGCCGGATACCCCCTCGCCGCCTACCTCCGCCGCCTACCCTCTCCAATGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTCGTCAAACACGCCGCCTTGGCCTACCTGCAGCCGATGCTCACCCCGCCAGCCACCGGCGAACGTAGCTTTATGCGCAGGCTCAAGAAGCACGGATTCGGATGCATCGAGTGGCTCGTCGCCGTCATCGGAGAACTCTCCGGTGGAGTCCGCCGGTGGTAA

Coding sequence (CDS)

ATGGAAGAATCCTCTCCCACTTTCCTCTCCTCCGATCGACTTCTCAGCTCATCGGAATTAGAATTTTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAGGACCTCCTGCCGGATACCCCCTCGCCGCCTACCTCCGCCGCCTACCCTCTCCAATGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTCGTCAAACACGCCGCCTTGGCCTACCTGCAGCCGATGCTCACCCCGCCAGCCACCGGCGAACGTAGCTTTATGCGCAGGCTCAAGAAGCACGGATTCGGATGCATCGAGTGGCTCGTCGCCGTCATCGGAGAACTCTCCGGTGGAGTCCGCCGGTGGTAA

Homology

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BLAST of CmoCh20G007320 vs. TrEMBL
Match: A0A0A0LPR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271440 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 6.5e-35
Identity = 83/111 (74.77%), Postives = 91/111 (81.98%), Query Frame = 1


Query: 5   SPT-FLSSDRLLSSSELEFSD-IEMTPLQSYTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SPT FLS +  LSS ELEFSD IEMTPLQSYTSLKDLLPD+PSPP SA      PA+D+L
Sbjct: 12  SPTSFLSPNHPLSSPELEFSDDIEMTPLQSYTSLKDLLPDSPSPPPSAT----SPAFDQL 71

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKKHGFGCIEWLVAVIGEL 114
           PIKNPLVKHAALAYLQPMLTPP T   +F+R LKKHGFGCIEWL AV+ E+
Sbjct: 72  PIKNPLVKHAALAYLQPMLTPPTTSHPTFLRILKKHGFGCIEWLAAVVHEV 118

[Close]

BLAST of CmoCh20G007320 vs. TrEMBL
Match: M5VHF3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022032mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.5e-19
Identity = 62/128 (48.44%), Postives = 81/128 (63.28%), Query Frame = 1


Query: 5   SPTFLSSDRLLSSSELEFSDIEMTPLQS--YTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SP+FL  +      E+E SDIEM  +Q+  YTSLKDLLP   SPPT  + P Q  +W E+
Sbjct: 21  SPSFLLPNGF---GEIEISDIEMITIQTVTYTSLKDLLP--ASPPTIMS-PTQNSSWHEI 80

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKK-------HGFGCIEWL----VAVIG 120
           PIKNPLVKHAALAYLQPM TPP  G++  +R L++       +G GC  WL    ++ + 
Sbjct: 81  PIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGTNGVGCFSWLGDVVLSGVR 140

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BLAST of CmoCh20G007320 vs. TrEMBL
Match: A0A061DXS2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006565 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-16
Identity = 59/111 (53.15%), Postives = 69/111 (62.16%), Query Frame = 1


Query: 5   SPTFLSSDRLLSSSELEFSDIEMTPLQS--YTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           S TFL  +   SS   + SDIEM  +QS  YTSLKDLLP +P   TS   P    +W E+
Sbjct: 28  SSTFLLHNGFGSS---QISDIEMITIQSVSYTSLKDLLPTSPPAITS---PTHNSSWHEI 87

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKKH---GFGCIEWLVAVI 111
           PIKNPLVKHAALAYLQPM +PP  GE+    RLK+      GC+ WL  VI
Sbjct: 88  PIKNPLVKHAALAYLQPMSSPPEVGEKGLFGRLKERCCGECGCVLWLHDVI 132

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BLAST of CmoCh20G007320 vs. TrEMBL
Match: A0A0D2VZV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G156800 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 54/117 (46.15%), Postives = 73/117 (62.39%), Query Frame = 1


Query: 1   MEESSPTFLSSDRLLSSSELEFSDIEMTPLQSYTSLKDLLPDTP----SPPTSAAYPLQC 60
           M   S  FL  + L SS   +FSD+EM  + SYTSLK+LLP +     SP TS  +    
Sbjct: 96  MNSRSSAFLLHNGLSSS---QFSDVEM--MTSYTSLKELLPASSPTNISPTTSTVHN--- 155

Query: 61  PAWDELPIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKK---HGFGCIEWLVAVI 111
            +W+E+PIKNPLVK AALAYLQPM + P  GE+ F+ R+K+   +  GC+ W+  V+
Sbjct: 156 SSWNEIPIKNPLVKQAALAYLQPMESLPPAGEKGFLERVKENCSNECGCVSWMFDVV 204

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BLAST of CmoCh20G007320 vs. TrEMBL
Match: A0A067KE83_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13075 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 32  SYTSLKDLLPDTPSPPTSAAYPLQCPAWDELPIKNPLVKHAALAYLQPMLTPPATGERSF 91
           +YTSLKDLLP   SPPT ++      +W+E+PIKNPLVK AALAYLQPM +PP  G++  
Sbjct: 8   TYTSLKDLLP--ASPPTISSPTQHNSSWNEIPIKNPLVKQAALAYLQPMSSPPEIGDKGL 67

Query: 92  MRRLKKHGF---GCIEWLVAVI 111
             RL+   +   GC EW   V+
Sbjct: 68  FGRLRDACYVECGCFEWFNDVV 87

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BLAST of CmoCh20G007320 vs. NCBI nr
Match: gi|659115776|ref|XP_008457731.1| (PREDICTED: uncharacterized protein LOC103497353 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 3.2e-35
Identity = 83/111 (74.77%), Postives = 91/111 (81.98%), Query Frame = 1


Query: 5   SPTF-LSSDRLLSSSELEFSD-IEMTPLQSYTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SPTF LS +  LSS EL+FSD IEMTPLQSYTSLKDLLPD+PSPP SA      PA+DEL
Sbjct: 10  SPTFFLSPNHPLSSPELQFSDDIEMTPLQSYTSLKDLLPDSPSPPPSAT----SPAFDEL 69

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKKHGFGCIEWLVAVIGEL 114
           PIKNPLVKHAALAYLQPMLTPP T   +F+R LKKHGFGCIEWL AV+ E+
Sbjct: 70  PIKNPLVKHAALAYLQPMLTPPTTAHPTFLRNLKKHGFGCIEWLAAVVDEV 116

[Close]

BLAST of CmoCh20G007320 vs. NCBI nr
Match: gi|700206832|gb|KGN61951.1| (hypothetical protein Csa_2G271440 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 9.3e-35
Identity = 83/111 (74.77%), Postives = 91/111 (81.98%), Query Frame = 1


Query: 5   SPT-FLSSDRLLSSSELEFSD-IEMTPLQSYTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SPT FLS +  LSS ELEFSD IEMTPLQSYTSLKDLLPD+PSPP SA      PA+D+L
Sbjct: 12  SPTSFLSPNHPLSSPELEFSDDIEMTPLQSYTSLKDLLPDSPSPPPSAT----SPAFDQL 71

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKKHGFGCIEWLVAVIGEL 114
           PIKNPLVKHAALAYLQPMLTPP T   +F+R LKKHGFGCIEWL AV+ E+
Sbjct: 72  PIKNPLVKHAALAYLQPMLTPPTTSHPTFLRILKKHGFGCIEWLAAVVHEV 118

[Close]

BLAST of CmoCh20G007320 vs. NCBI nr
Match: gi|1009150879|ref|XP_015893260.1| (PREDICTED: zinc-regulated protein 8-like [Ziziphus jujuba])

HSP 1 Score: 102.8 bits (255), Expect = 4.2e-19
Identity = 60/116 (51.72%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 5   SPTFLSSDRLLSSSELEFSDIEMTPLQS--YTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SPTFL  D  L S E + SDIEM  +QS  YTSLKDLLP  PSPP +   P    +W E+
Sbjct: 27  SPTFLFHDGGLDSPEFKVSDIEMITIQSLTYTSLKDLLP--PSPPPAIMSPTHNSSWHEI 86

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKKH--------GFGCIEWLVAVI 111
           PI+NPLVKHAALAYLQPM TP    ++    +LK          GFGC  WL  V+
Sbjct: 87  PIRNPLVKHAALAYLQPMSTPTEADDKGLFGKLKDKCLCGAAGGGFGCFGWLGDVV 140

[Close]

BLAST of CmoCh20G007320 vs. NCBI nr
Match: gi|595790959|ref|XP_007199228.1| (hypothetical protein PRUPE_ppa022032mg, partial [Prunus persica])

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 62/128 (48.44%), Postives = 81/128 (63.28%), Query Frame = 1


Query: 5   SPTFLSSDRLLSSSELEFSDIEMTPLQS--YTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SP+FL  +      E+E SDIEM  +Q+  YTSLKDLLP   SPPT  + P Q  +W E+
Sbjct: 21  SPSFLLPNGF---GEIEISDIEMITIQTVTYTSLKDLLP--ASPPTIMS-PTQNSSWHEI 80

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKK-------HGFGCIEWL----VAVIG 120
           PIKNPLVKHAALAYLQPM TPP  G++  +R L++       +G GC  WL    ++ + 
Sbjct: 81  PIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGTNGVGCFSWLGDVVLSGVR 140

[Close]

BLAST of CmoCh20G007320 vs. NCBI nr
Match: gi|645260966|ref|XP_008236068.1| (PREDICTED: uncharacterized protein LOC103334865 [Prunus mume])

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 61/128 (47.66%), Postives = 81/128 (63.28%), Query Frame = 1


Query: 5   SPTFLSSDRLLSSSELEFSDIEMTPLQS--YTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SP+FL  +      E+E SDIEM  +Q+  YTSL+DLLP   SPPT  + P Q  +W E+
Sbjct: 21  SPSFLLPNGF---GEIEISDIEMITIQTVTYTSLRDLLP--ASPPTIMS-PTQNSSWHEI 80

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLK-------KHGFGCIEWL----VAVIG 120
           PIKNPLVKHAALAYLQPM TPP  G++  +R L+       ++G GC  WL    ++ + 
Sbjct: 81  PIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCGGENGLGCFAWLGDVVLSGVR 140

The following BLAST results are available for this feature:

BLAST of CmoCh20G007320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh20G007320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPR9_CUCSA	6.5e-35	74.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271440 PE=4 SV=1	[more]
M5VHF3_PRUPE	8.5e-19	48.44	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022032mg PE=4 S...	[more]
A0A061DXS2_THECC	2.3e-16	53.15	Uncharacterized protein OS=Theobroma cacao GN=TCM_006565 PE=4 SV=1	[more]
A0A0D2VZV0_GOSRA	2.8e-14	46.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G156800 PE=4 SV=1	[more]
A0A067KE83_JATCU	1.2e-12	51.22	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13075 PE=4 SV=1	[more]

BLAST of CmoCh20G007320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh20G007320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115776\|ref\|XP_008457731.1\|	3.2e-35	74.77	PREDICTED: uncharacterized protein LOC103497353 [Cucumis melo]	[more]
gi\|700206832\|gb\|KGN61951.1\|	9.3e-35	74.77	hypothetical protein Csa_2G271440 [Cucumis sativus]	[more]
gi\|1009150879\|ref\|XP_015893260.1\|	4.2e-19	51.72	PREDICTED: zinc-regulated protein 8-like [Ziziphus jujuba]	[more]
gi\|595790959\|ref\|XP_007199228.1\|	1.2e-18	48.44	hypothetical protein PRUPE_ppa022032mg, partial [Prunus persica]	[more]
gi\|645260966\|ref\|XP_008236068.1\|	2.7e-18	47.66	PREDICTED: uncharacterized protein LOC103334865 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G007320.1	CmoCh20G007320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34569	FAMILY NOT NAMED	coord: 22..95 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh20G007320	CmaCh20G007350	Cucurbita maxima (Rimu)	cmacmoB551
CmoCh20G007320	Cla020255	Watermelon (97103) v1	cmowmB523
CmoCh20G007320	Csa2G271440	Cucumber (Chinese Long) v2	cmocuB531
CmoCh20G007320	ClCG02G012110	Watermelon (Charleston Gray)	cmowcgB492
CmoCh20G007320	CSPI02G13750	Wild cucumber (PI 183967)	cmocpiB536
CmoCh20G007320	Lsi10G005110	Bottle gourd (USVL1VR-Ls)	cmolsiB491
CmoCh20G007320	Cp4.1LG16g03310	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G007320	MELO3C034691.2	Melon (DHL92) v3.6.1	cmomedB559
CmoCh20G007320	Cla97C02G037780	Watermelon (97103) v2	cmowmbB559
CmoCh20G007320	Bhi10G001433	Wax gourd	cmowgoB0679
CmoCh20G007320	Carg16157	Silver-seed gourd	carcmoB0473

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G007320	Cucurbita pepo (Zucchini)	cmocpeB511
CmoCh20G007320	Cucurbita pepo (Zucchini)	cmocpeB513
CmoCh20G007320	Cucurbita pepo (Zucchini)	cmocpeB525
CmoCh20G007320	Cucurbita pepo (Zucchini)	cmocpeB528
CmoCh20G007320	Bottle gourd (USVL1VR-Ls)	cmolsiB501
CmoCh20G007320	Bottle gourd (USVL1VR-Ls)	cmolsiB502
CmoCh20G007320	Cucumber (Gy14) v2	cgybcmoB787
CmoCh20G007320	Cucumber (Gy14) v2	cgybcmoB939
CmoCh20G007320	Melon (DHL92) v3.6.1	cmomedB578
CmoCh20G007320	Melon (DHL92) v3.6.1	cmomedB590
CmoCh20G007320	Silver-seed gourd	carcmoB0549
CmoCh20G007320	Silver-seed gourd	carcmoB1093
CmoCh20G007320	Cucumber (Chinese Long) v3	cmocucB0669
CmoCh20G007320	Cucumber (Chinese Long) v3	cmocucB0671
CmoCh20G007320	Watermelon (97103) v2	cmowmbB553
CmoCh20G007320	Wax gourd	cmowgoB0673
CmoCh20G007320	Cucurbita moschata (Rifu)	cmocmoB116
CmoCh20G007320	Cucurbita moschata (Rifu)	cmocmoB383
CmoCh20G007320	Cucurbita moschata (Rifu)	cmocmoB412
CmoCh20G007320	Cucurbita moschata (Rifu)	cmocmoB417
CmoCh20G007320	Cucumber (Gy14) v1	cgycmoB1026
CmoCh20G007320	Cucurbita maxima (Rimu)	cmacmoB149
CmoCh20G007320	Cucurbita maxima (Rimu)	cmacmoB516
CmoCh20G007320	Cucurbita maxima (Rimu)	cmacmoB614
CmoCh20G007320	Wild cucumber (PI 183967)	cmocpiB567
CmoCh20G007320	Cucumber (Chinese Long) v2	cmocuB561
CmoCh20G007320	Melon (DHL92) v3.5.1	cmomeB503
CmoCh20G007320	Melon (DHL92) v3.5.1	cmomeB512
CmoCh20G007320	Watermelon (Charleston Gray)	cmowcgB483
CmoCh20G007320	Watermelon (97103) v1	cmowmB511
CmoCh20G007320	Watermelon (97103) v1	cmowmB514