Cla019995 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla019995
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 25074414 .. 25076491 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTTAGACGATTCTTAGGCTTTTCAGATGGTGAGCTCATGAGATCAGATGCTAAGCCTTGTTCACAGTTGATGAAACAGACAGCTGGGTTATGTACTGTTGGAGGAGGACTTGCGTTCTGGATTCTTTGTAGATTACATTATGGTCTGTCAAGTATTCTTCTCATCTCATTTGGTTTTGAGATGCATAATCAAGTTTCATGTCTTTCTTTTTTCTCGATCAACTTTCAGTGAACACAAACGACACTTCAATCAATGATTGTTTTCTCAGCTCATTTGGTTTGATATGCACAATCAAGTTTCATGTCTTTGTTTTTTCTCGATCAACTTTCAGTGAACACAAATGACACTTCAATCAATGATTGTTTTCTAATAGATTCTAATATATTTACTTACTCCATTCAAATAGAAGCCAAAATGTTCTAGATCTATCTTTAAATATATATGTAGGGATGTACATGGGTTAGGTTGAAGGGGTTTTGTGAACCAACATGAAAATTCGGGTTAGTTACTTGAAAGACCTGAATAGAGATATGGACGCTAGACGAAGATGGAGAGACTGAGATGGATACGGAGAGTGAGATGGTGATAGATGAGAGAGATACAAATCAAGGCTAAGGTATGATTCAAGATGGAGAGAGACAAGGGAGACGTGAGAAGAGAATTGAGAAGTGGAGAGGGGCCTGAGATGGAGAGAAACAACATGAATGAACCCTAAAAATCCGAAACAACGTGAATGAACCCTAAAAATCCCCCAACCCGAGAACCAAACTGAATTTCGGTTCTCCAAAAATCCAAGCAATCCAAACCCAAAAAAAATTCTACCCAACCCAACCTAAACTGAAAAAAATCTAATCCAACCCAATCCTTACCGTTTGGGTTAGGTAGCTTGGGTTGTTCGGGTTCTTGGGTCATTTGAACACCCCTACCTCTATATAGGGAGTTTAGTTAGGCATCGAGATTGGATTTACCAAGTATAAGTACCTCTAGAATTACTTTTAAAACAAAAGCTTTTAACAAAAGTCTTGAATGACAAGCACCTTAGGAAAAAATGCTTAATTATGGAACACATCCGTGCTTGGTTCTGCATTCTCAAGAGTACTTTTAAATTCTTTCTCATCATGCACTTGGGCAAATGGGCCACATGCACTTTATTAATGTTTTCTCACTAAGCATTTAAGTGTTGTGGACTTTGTTATTTTCATACATGTCGAGTAATCAGTGGTTTTTTCTGTGCTAAAGTACTCCCATTTAGCGTATGCATAATAGTTCTCTGCTGCATCTGGTCCATTTGTTTCCTTTCATCTATGGCTTTTTGGCTGTAGTACAAACAAATTGAAACACTTTTTCATTTTCTTTTAAAGTAGAAAGCAATTGTAACTCTGTTTGTCAAAACCAATATTTATCCACCCTTTCCTTTTAAAGTGGGTTGCCTGTGGTCCTATGGTATTTTAATATTGTACTCAAAGAAGCACAGCCACTTTAGTTTAACTAGTGTATCCATGTCTAACACTCATTAGACACTTGGACACTTTGACCCTTGTTGGACACATATTGGACACTTGTTAGCACAATATATATGTGTTAGACACTAATTATGCAATGTCATTATAAGTCAACATTTGTTAGGCGCTTATAACACTTGTTAAGTATGATAAATAGGCATAATAATACAGGACTAAGAAAGTTTTTGACTGAAATACATCAAACTACTATTTCTAAGCATATAAATGCAAACGTTTGTTGACTTTGAAGTTTCAATTTCTGGTATAATATTGATATATATTTTTAAAAGTGTATCTTTGAACAAATATGTCCTTGTTCCTCCTAGAAAAAAAGGATGTGTCACTGTGGCATCATATCCATATCCCTGCTTCTTTGATTGTACTTAAGCCTGTGAGATTCTGGATTGTGTTGTGATAGGTCCGAGAATTACAGTACCTAGGAGTCTTCGTTGGGCAGCTTGTGGAGCAGTATCGATGAGTGCAACCTCGGCTTTGCTTGTCCGATTGTTTAGTCCAGAATGTGAACCCCAGAATATAGCTGCTTATGACAAAAGGAAAGTTGTAAGGTAA

mRNA sequence

ATGGCACTTAGACGATTCTTAGGCTTTTCAGATGGTGAGCTCATGAGATCAGATGCTAAGCCTTGTTCACAGTTGATGAAACAGACAGCTGGGTTATGTACTGTTGGAGGAGGACTTGCGTTCTGGATTCTTTGTAGATTACATTATGGTCCGAGAATTACAGTACCTAGGAGTCTTCGTTGGGCAGCTTGTGGAGCAGTATCGATGAGTGCAACCTCGGCTTTGCTTGTCCGATTGTTTAGTCCAGAATGTGAACCCCAGAATATAGCTGCTTATGACAAAAGGAAAGTTGTAAGGTAA

Coding sequence (CDS)

ATGGCACTTAGACGATTCTTAGGCTTTTCAGATGGTGAGCTCATGAGATCAGATGCTAAGCCTTGTTCACAGTTGATGAAACAGACAGCTGGGTTATGTACTGTTGGAGGAGGACTTGCGTTCTGGATTCTTTGTAGATTACATTATGGTCCGAGAATTACAGTACCTAGGAGTCTTCGTTGGGCAGCTTGTGGAGCAGTATCGATGAGTGCAACCTCGGCTTTGCTTGTCCGATTGTTTAGTCCAGAATGTGAACCCCAGAATATAGCTGCTTATGACAAAAGGAAAGTTGTAAGGTAA

Protein sequence

MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR

Homology

[Close]

BLAST of Cla019995 vs. TrEMBL
Match: A0A0A0LH12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034810 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.1e-43
Identity = 87/97 (89.69%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRR LGFSDGE+MRSDAKPCSQLMKQTAGLC+V G L FWILCRLHYGPRITV RSLR
Sbjct: 1  MALRRLLGFSDGEIMRSDAKPCSQLMKQTAGLCSVEGALGFWILCRLHYGPRITVRRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKV 98
          WAACGA SMSATSALLVRLFSPECEPQNIAAYD RK+
Sbjct: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDNRKL 97

[Close]

BLAST of Cla019995 vs. TrEMBL
Match: D7UAA5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00340 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.6e-42
Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 1


Query: 1  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRR  GFSDGELMRSDAKPCS+LMKQTAGL TVGGG AFWILCRLHYGPRITVPRSLR
Sbjct: 1  MALRRLFGFSDGELMRSDAKPCSRLMKQTAGLFTVGGGFAFWILCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRK 97
          WAACGAVS+S++SALLVRLFSP CEPQNIAAYD +K
Sbjct: 61 WAACGAVSVSSSSALLVRLFSPACEPQNIAAYDNKK 96

[Close]

BLAST of Cla019995 vs. TrEMBL
Match: M5W2I7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025034mg PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-41
Identity = 83/94 (88.30%), Postives = 89/94 (94.68%), Query Frame = 1


Query: 1  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRRFLGFSDGELMRSDAKPCS+LM+ TAG+ +VGG L FWILCRLHYGPRITVPRSLR
Sbjct: 1  MALRRFLGFSDGELMRSDAKPCSRLMRHTAGIFSVGGALGFWILCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDK 95
          WAACGAVSMS+T+ALLVRLFSPECEPQNIA YDK
Sbjct: 61 WAACGAVSMSSTTALLVRLFSPECEPQNIATYDK 94

[Close]

BLAST of Cla019995 vs. TrEMBL
Match: A5BJU8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037764 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-41
Identity = 84/96 (87.50%), Postives = 89/96 (92.71%), Query Frame = 1


Query: 1  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALR   GFSDGELMRSDAKPCS+LMKQTAGL TVGGG AFWILCRLHYGPRITVPRSLR
Sbjct: 1  MALRHLFGFSDGELMRSDAKPCSRLMKQTAGLFTVGGGFAFWILCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRK 97
          WAACGAVS+S++SALLVRLFSP CEPQNIAAYD +K
Sbjct: 61 WAACGAVSVSSSSALLVRLFSPACEPQNIAAYDNKK 96

[Close]

BLAST of Cla019995 vs. TrEMBL
Match: A0A067DQJ3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034386mg PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-41
Identity = 81/96 (84.38%), Postives = 90/96 (93.75%), Query Frame = 1


Query: 1  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRRF GFSDGELMRSDAKPCS+LM+QTAG+ TVGG L FW+LCRLHYGPR+TVPRSLR
Sbjct: 1  MALRRFFGFSDGELMRSDAKPCSRLMRQTAGIFTVGGALGFWVLCRLHYGPRVTVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRK 97
          WA CGAVS+S+T+ALLVRLFSPECEPQNIAAYD+ K
Sbjct: 61 WAGCGAVSVSSTTALLVRLFSPECEPQNIAAYDRGK 96

[Close]

BLAST of Cla019995 vs. NCBI nr
Match: gi|659070047|ref|XP_008453135.1| (PREDICTED: uncharacterized protein LOC103493937 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-43
Identity = 86/97 (88.66%), Postives = 91/97 (93.81%), Query Frame = 1


Query: 1  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRR LGFSDGE+MRSDAKPCSQLMKQTAGLC+V G L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRRLLGFSDGEIMRSDAKPCSQLMKQTAGLCSVEGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKV 98
          WAACGA SMSATSALLVRLFSPECEPQNIAAYD+ K+
Sbjct: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDRGKL 97

[Close]

BLAST of Cla019995 vs. NCBI nr
Match: gi|449453986|ref|XP_004144737.1| (PREDICTED: uncharacterized protein LOC101221073 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 5.8e-43
Identity = 87/97 (89.69%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRR LGFSDGE+MRSDAKPCSQLMKQTAGLC+V G L FWILCRLHYGPRITV RSLR
Sbjct: 1  MALRRLLGFSDGEIMRSDAKPCSQLMKQTAGLCSVEGALGFWILCRLHYGPRITVRRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKV 98
          WAACGA SMSATSALLVRLFSPECEPQNIAAYD RK+
Sbjct: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDNRKL 97

[Close]

BLAST of Cla019995 vs. NCBI nr
Match: gi|720066668|ref|XP_010276591.1| (PREDICTED: uncharacterized protein LOC104611304 [Nelumbo nucifera])

HSP 1 Score: 181.8 bits (460), Expect = 5.8e-43
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 1  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRRF GFSDGELMRSDAKPCS+LM+ TAG+ TVGG LAFW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRRFFGFSDGELMRSDAKPCSRLMRHTAGVFTVGGALAFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRK 97
          WAACGAVSMS+TSALLVRLFSPECEPQNIAAYDK K
Sbjct: 61 WAACGAVSMSSTSALLVRLFSPECEPQNIAAYDKGK 96

[Close]

BLAST of Cla019995 vs. NCBI nr
Match: gi|747080597|ref|XP_011087555.1| (PREDICTED: uncharacterized protein LOC105169004 [Sesamum indicum])

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-42
Identity = 83/96 (86.46%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 1  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRR LGFSDGELMRSDAKPCS+LM+QTAG+ TVGGGL FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRRMLGFSDGELMRSDAKPCSRLMRQTAGIFTVGGGLGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRK 97
          WAACGA+S S T+ALLVRLFSPECEPQNIAAYD++K
Sbjct: 61 WAACGAISTSTTTALLVRLFSPECEPQNIAAYDRKK 96

[Close]

BLAST of Cla019995 vs. NCBI nr
Match: gi|802581484|ref|XP_012069741.1| (PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas])

HSP 1 Score: 179.1 bits (453), Expect = 3.8e-42
Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 1  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRRFLGFSDGELMRSDAKPCS+LM+QTAG+ +VGG L FWILCRLHYGPRITVPRSLR
Sbjct: 1  MALRRFLGFSDGELMRSDAKPCSRLMRQTAGIFSVGGALGFWILCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRK 97
          WA CGA+S+S+TSALLVRLFSPECEPQNIAAYDK K
Sbjct: 61 WATCGAISVSSTSALLVRLFSPECEPQNIAAYDKVK 96

The following BLAST results are available for this feature:

BLAST of Cla019995 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH12_CUCSA	4.1e-43	89.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034810 PE=4 SV=1	[more]
D7UAA5_VITVI	2.6e-42	88.54	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00340 PE=4 SV=...	[more]
M5W2I7_PRUPE	1.0e-41	88.30	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025034mg PE=4 SV=1	[more]
A5BJU8_VITVI	1.0e-41	87.50	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037764 PE=4 SV=1	[more]
A0A067DQJ3_CITSI	1.3e-41	84.38	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034386mg PE=4 SV=1	[more]

BLAST of Cla019995 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070047\|ref\|XP_008453135.1\|	2.6e-43	88.66	PREDICTED: uncharacterized protein LOC103493937 [Cucumis melo]	[more]
gi\|449453986\|ref\|XP_004144737.1\|	5.8e-43	89.69	PREDICTED: uncharacterized protein LOC101221073 [Cucumis sativus]	[more]
gi\|720066668\|ref\|XP_010276591.1\|	5.8e-43	89.58	PREDICTED: uncharacterized protein LOC104611304 [Nelumbo nucifera]	[more]
gi\|747080597\|ref\|XP_011087555.1\|	1.7e-42	86.46	PREDICTED: uncharacterized protein LOC105169004 [Sesamum indicum]	[more]
gi\|802581484\|ref\|XP_012069741.1\|	3.8e-42	87.50	PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009086	methionine biosynthetic process
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU61419	watermelon EST collection version 2.0	transcribed_cluster
WMU67430	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla019995	Cla019995.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU67430	WMU67430	transcribed_cluster
WMU61419	WMU61419	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36331	FAMILY NOT NAMED	coord: 2..99 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla019995	Cla97C02G040420	Watermelon (97103) v2	wmwmbB316
Cla019995	Csa2G034810	Cucumber (Chinese Long) v2	cuwmB147
Cla019995	MELO3C004152	Melon (DHL92) v3.5.1	mewmB418
Cla019995	ClCG02G014650	Watermelon (Charleston Gray)	wcgwmB197
Cla019995	CSPI02G04990	Wild cucumber (PI 183967)	cpiwmB149
Cla019995	Cucsa.090350	Cucumber (Gy14) v1	cgywmB105
Cla019995	CmaCh12G008690	Cucurbita maxima (Rimu)	cmawmB171
Cla019995	CmoCh12G008750	Cucurbita moschata (Rifu)	cmowmB157
Cla019995	Lsi11G006640	Bottle gourd (USVL1VR-Ls)	lsiwmB107
Cla019995	Cp4.1LG07g07180	Cucurbita pepo (Zucchini)	cpewmB807
Cla019995	CsGy2G005130	Cucumber (Gy14) v2	cgybwmB140
Cla019995	MELO3C004152.2	Melon (DHL92) v3.6.1	medwmB407
Cla019995	Carg16445	Silver-seed gourd	carwmB0913
Cla019995	CsaV3_2G007320	Cucumber (Chinese Long) v3	cucwmB159
Cla019995	Bhi06G001232	Wax gourd	wgowmB137

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla019995	Cucurbita maxima (Rimu)	cmawmB764
Cla019995	Cucurbita moschata (Rifu)	cmowmB757
Cla019995	Melon (DHL92) v3.5.1	mewmB282
Cla019995	Watermelon (Charleston Gray)	wcgwmB242
Cla019995	Cucurbita pepo (Zucchini)	cpewmB113
Cla019995	Melon (DHL92) v3.6.1	medwmB275
Cla019995	Silver-seed gourd	carwmB0563
Cla019995	Wax gourd	wgowmB135
Cla019995	Watermelon (97103) v1	wmwmB091