Carg16445 (gene) Silver-seed gourd

NameCarg16445
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description40S ribosomal protein
LocationCucurbita_argyrosperma_scaffold_130 : 579454 .. 581417 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTTAGACGGTTCTTTGGTTTTTCTGATGGTGAGCTAATGAGATCGGACGCTAAACCGTGTTCACAGTTGATGAAACAGACTGCTGGATTATGTACTGTTGGAGGAGGACTTGCATTCTGGATTCTTTGCAGATTACACTATGGTCTGTTAAGTATTCTTCTCATCTGGTTTTAAATGCATAATCAAGTTGCATGTTTTTCCCTTTTCCAGTTCATCTCTTAGTGAAGATTAATGAGTTTCCTTATTGATTCTAATCTATTTAGTTACCATATAAATGGAAGCTATAGTATTCTGAATCTGAAGTTCGAATAGGTATCAGGTTAAGTTGCCTAAATACGAGTATGTTTGGGAGTACTTATAAACTTCTAAAATAAATGCTTATAACAAAAGTGTAACGGCCCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGTTTTCCCTTTTGGGCTTCCCCTCAAGGTTTTTAAAACGCGCCTACTAGGGAGAGGTTTCCACACCCTTGTAAGGAAGGCTTCGTTACCCTCTCCAACTGATATGGGATCTCACAATCCACCTCTCTTGGGGGGCCAACGTCCCCGCCCGGTAATTGACTCTAATACCATTTGTAACGGTCTAAGCCCACCGCTAGTAGATATTGTCCTCTTTGGGTTTTCCCTTCCGCCTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGCATCTACTAGGGAGAGGTTTTCACACCCTTGTAAGGAAGGCTTCGTTCCCCTCTCCAACCGATGTGGGATTTCACAAAAAGTCTTTAATCACGAGCACCTTCGAAAAGAAGTGCTTAATGACGGATCATATTCGTGTTTGGTCCAACATTCTTAAGAATACTTTTCTTTTAGGTTCTTTCTCATCAAGCACTTGAGCCAATGGGGAAAATGCACTTTATCAGTGTTTTCTTACGAATCATTCAAGTGTTTTGAACAGTTTTTTTTTTATAAAAGAATACTTTTAAGTTACTTTCAAACATAGTATGCACACGACATTTCTCTGCCGGATTCGTTACATTTGTTGCCTTTCTTCTATGACTTTCTGGATGTAGTAGAAGCAAATTGAAGCACTTTTTCATTTATCTTTGATTAAATCAAGAACAATATTCAAGGTTAGATTCAAATCCAATGCAAAGCATCAGTTGTGGTGGTGCCTTTACAGTATTGAAGTAGATTGCCTGTGATCTCAGAGGGTTTTAATATTGCACTTATTAAGCTTGTGGGCTTCTGGATTCTGTTGTGTGATAGGTCCAAGAATTACAGTTCCTAGGAGTCTGCGTTGGGCAGCTTGTGGAGCAGCATCAATGAGTGCGACCTCGGCTTTGCTTGTTCGATTGTTTAGTCCAGAATGTGAACCTCAGAACATTGCTGCATATGACAAAGGGCAAGCTGCAAGGTAATTGACATTCAAAGCGCAATGATCTTAGTGTATTGCTTTTGAAGTTACAATTTTGTGTTTATGGTTGAGTACGTGATAGTTAACTATCTTGCCACGCACTCGGTTCGTTCATGGCTCCATACAACCATGTATTCAGTTACGTTGTTATTGTTAAGTTTCTCGACTCTTGTCATAGCTAAGGAGAAATTATTGGACGGAGTATGTTACAATGTGACAATGGCTTTGCAAAATGTATTTTCATAGGGACTAAATTGGTAACTTAATTTTAGATGTCGTATCGAGCTTTATATATTCCGACCCCATTAGTTGCTTGTTGGGGGTGGTTTCGAAAGTAGAATTAAAGTGACTCCAATTCCATTTCTTGAGTAGACATTTTTGTTATTTTCCCCCAAAAAAGAACTGTTTTTTTCAACTCATACATGATGTAGGTACACATCCCTTTTATTTTGTCCAATAAGAATCATAGTCCATACACTTTCTCTTACCAAACCGGAATTGACCTAAATTGTTTTCATTTGATGATTATGATCTCAATTCA

mRNA sequence

ATGGCGCTTAGACGGTTCTTTGGTTTTTCTGATGGTGAGCTAATGAGATCGGACGCTAAACCGTGTTCACAGTTGATGAAACAGACTGCTGGATTATGTACTGTTGGAGGAGGACTTGCATTCTGGATTCTTTGCAGATTACACTATGGTCCAAGAATTACAGTTCCTAGGAGTCTGCGTTGGGCAGCTTGTGGAGCAGCATCAATGAGTGCGACCTCGGCTTTGCTTGTTCGATTGTTTAGTCCAGAATGTGAACCTCAGAACATTGCTGCATATGACAAAGGGCAAGCTGCAAGGTAATTGACATTCAAAGCGCAATGATCTTAGTGTATTGCTTTTGAAGTTACAATTTTGTGTTTATGGTTGAGTACGTGATAGTTAACTATCTTGCCACGCACTCGGTTCGTTCATGGCTCCATACAACCATGTATTCAGTTACGTTGTTATTGTTAAGTTTCTCGACTCTTGTCATAGCTAAGGAGAAATTATTGGACGGAGTATGTTACAATGTGACAATGGCTTTGCAAAATGTATTTTCATAGGGACTAAATTGGTAACTTAATTTTAGATGTCGTATCGAGCTTTATATATTCCGACCCCATTAGTTGCTTGTTGGGGGTGGTTTCGAAAGTAGAATTAAAGTGACTCCAATTCCATTTCTTGAGTAGACATTTTTGTTATTTTCCCCCAAAAAAGAACTGTTTTTTTCAACTCATACATGATGTAGGTACACATCCCTTTTATTTTGTCCAATAAGAATCATAGTCCATACACTTTCTCTTACCAAACCGGAATTGACCTAAATTGTTTTCATTTGATGATTATGATCTCAATTCA

Coding sequence (CDS)

ATGGCGCTTAGACGGTTCTTTGGTTTTTCTGATGGTGAGCTAATGAGATCGGACGCTAAACCGTGTTCACAGTTGATGAAACAGACTGCTGGATTATGTACTGTTGGAGGAGGACTTGCATTCTGGATTCTTTGCAGATTACACTATGGTCCAAGAATTACAGTTCCTAGGAGTCTGCGTTGGGCAGCTTGTGGAGCAGCATCAATGAGTGCGACCTCGGCTTTGCTTGTTCGATTGTTTAGTCCAGAATGTGAACCTCAGAACATTGCTGCATATGACAAAGGGCAAGCTGCAAGGTAA

Protein sequence

MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR
BLAST of Carg16445 vs. NCBI nr
Match: XP_022937466.1 (uncharacterized protein LOC111443868 [Cucurbita moschata])

HSP 1 Score: 206.8 bits (525), Expect = 3.3e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR 100
           WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR 99

BLAST of Carg16445 vs. NCBI nr
Match: XP_022969628.1 (uncharacterized protein LOC111468599 [Cucurbita maxima])

HSP 1 Score: 205.3 bits (521), Expect = 9.6e-50
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR 100
           WAACGAASMSATSALLVRLFSPECEPQNIAAYDKG+AAR
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGKAAR 99

BLAST of Carg16445 vs. NCBI nr
Match: XP_023538321.1 (uncharacterized protein LOC111799138 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.1 bits (518), Expect = 2.1e-49
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRRFFGFSDG+LMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGDLMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR 100
           WAACGAASMSATSALLVRLFSPECEPQNIAAYDKG+AAR
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGKAAR 99

BLAST of Carg16445 vs. NCBI nr
Match: XP_022156333.1 (uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156334.1 uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156335.1 uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156336.1 uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156337.1 uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156338.1 uncharacterized protein LOC111023254 [Momordica charantia])

HSP 1 Score: 187.6 bits (475), Expect = 2.1e-44
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRR  GFSDGE+MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR 100
           WAACGA SMSATSALLVRLFSPECEPQNIAAYDK +  R
Sbjct: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 99

BLAST of Carg16445 vs. NCBI nr
Match: XP_008453135.1 (PREDICTED: uncharacterized protein LOC103493937 [Cucumis melo] >XP_008453144.1 PREDICTED: uncharacterized protein LOC103493937 [Cucumis melo] >XP_008453150.1 PREDICTED: uncharacterized protein LOC103493937 [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-43
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRR  GFSDGE+MRSDAKPCSQLMKQTAGLC+V G L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRRLLGFSDGEIMRSDAKPCSQLMKQTAGLCSVEGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQ 97
          WAACGAASMSATSALLVRLFSPECEPQNIAAYD+G+
Sbjct: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDRGK 96

BLAST of Carg16445 vs. TAIR10
Match: AT1G57540.1 (unknown protein)

HSP 1 Score: 160.6 bits (405), Expect = 4.9e-40
Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 0

Query: 1  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALR+  G+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRQKLGWSEGDLMRSDAKPCSRLMKQTAAIFTVGGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYD 94
          WA CGA S+S ++A+LVRLFSPECEPQNIAAYD
Sbjct: 61 WAGCGALSVSTSTAMLVRLFSPECEPQNIAAYD 93

BLAST of Carg16445 vs. TrEMBL
Match: tr|A0A1U8BA55|A0A1U8BA55_NELNU (uncharacterized protein LOC104611304 OS=Nelumbo nucifera OX=4432 GN=LOC104611304 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.9e-44
Identity = 86/96 (89.58%), Postives = 92/96 (95.83%), Query Frame = 0

Query: 1  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRRFFGFSDGELMRSDAKPCS+LM+ TAG+ TVGG LAFW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRRFFGFSDGELMRSDAKPCSRLMRHTAGVFTVGGALAFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQ 97
          WAACGA SMS+TSALLVRLFSPECEPQNIAAYDKG+
Sbjct: 61 WAACGAVSMSSTSALLVRLFSPECEPQNIAAYDKGK 96

BLAST of Carg16445 vs. TrEMBL
Match: tr|A0A1S3BWM4|A0A1S3BWM4_CUCME (uncharacterized protein LOC103493937 OS=Cucumis melo OX=3656 GN=LOC103493937 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.9e-44
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRR  GFSDGE+MRSDAKPCSQLMKQTAGLC+V G L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRRLLGFSDGEIMRSDAKPCSQLMKQTAGLCSVEGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQ 97
          WAACGAASMSATSALLVRLFSPECEPQNIAAYD+G+
Sbjct: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDRGK 96

BLAST of Carg16445 vs. TrEMBL
Match: tr|A0A2H5NT88|A0A2H5NT88_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_073870 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.9e-42
Identity = 81/96 (84.38%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRRFFGFSDGELMRSDAKPCS+LM+QTAG+ TVGG L FW+LCRLHYGPR+TVPRSLR
Sbjct: 1  MALRRFFGFSDGELMRSDAKPCSRLMRQTAGIFTVGGALGFWVLCRLHYGPRVTVPRSLR 60

Query: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQ 97
          WA CGA S+S+T+ALLVRLFSPECEPQNIAAYD+G+
Sbjct: 61 WAGCGAVSVSSTTALLVRLFSPECEPQNIAAYDRGK 96

BLAST of Carg16445 vs. TrEMBL
Match: tr|A0A067DQJ3|A0A067DQJ3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034386mg PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.9e-42
Identity = 81/96 (84.38%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRRFFGFSDGELMRSDAKPCS+LM+QTAG+ TVGG L FW+LCRLHYGPR+TVPRSLR
Sbjct: 1  MALRRFFGFSDGELMRSDAKPCSRLMRQTAGIFTVGGALGFWVLCRLHYGPRVTVPRSLR 60

Query: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQ 97
          WA CGA S+S+T+ALLVRLFSPECEPQNIAAYD+G+
Sbjct: 61 WAGCGAVSVSSTTALLVRLFSPECEPQNIAAYDRGK 96

BLAST of Carg16445 vs. TrEMBL
Match: tr|A0A0A0LH12|A0A0A0LH12_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034810 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.3e-42
Identity = 85/93 (91.40%), Postives = 87/93 (93.55%), Query Frame = 0

Query: 1  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRR  GFSDGE+MRSDAKPCSQLMKQTAGLC+V G L FWILCRLHYGPRITV RSLR
Sbjct: 1  MALRRLLGFSDGEIMRSDAKPCSQLMKQTAGLCSVEGALGFWILCRLHYGPRITVRRSLR 60

Query: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYD 94
          WAACGAASMSATSALLVRLFSPECEPQNIAAYD
Sbjct: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYD 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022937466.13.3e-50100.00uncharacterized protein LOC111443868 [Cucurbita moschata][more]
XP_022969628.19.6e-5098.99uncharacterized protein LOC111468599 [Cucurbita maxima][more]
XP_023538321.12.1e-4997.98uncharacterized protein LOC111799138 [Cucurbita pepo subsp. pepo][more]
XP_022156333.12.1e-4489.90uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156334.1 uncha... [more]
XP_008453135.11.3e-4389.58PREDICTED: uncharacterized protein LOC103493937 [Cucumis melo] >XP_008453144.1 P... [more]
Match NameE-valueIdentityDescription
AT1G57540.14.9e-4078.49unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1U8BA55|A0A1U8BA55_NELNU8.9e-4489.58uncharacterized protein LOC104611304 OS=Nelumbo nucifera OX=4432 GN=LOC104611304... [more]
tr|A0A1S3BWM4|A0A1S3BWM4_CUCME8.9e-4489.58uncharacterized protein LOC103493937 OS=Cucumis melo OX=3656 GN=LOC103493937 PE=... [more]
tr|A0A2H5NT88|A0A2H5NT88_CITUN2.9e-4284.38Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_073870 PE=4 SV=1[more]
tr|A0A067DQJ3|A0A067DQJ3_CITSI2.9e-4284.38Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034386mg PE=4 SV=1[more]
tr|A0A0A0LH12|A0A0A0LH12_CUCSA8.3e-4291.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034810 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16445-RACarg16445-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36331FAMILY NOT NAMEDcoord: 1..95