Cla019962 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla019962
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Pseudouridine synthase family protein (AHRD V1 ***- D7KAZ8_ARALL); contains Interpro domain(s) IPR006145 Pseudouridine synthase, RsuA and RluB/C/D/E/F
Location	Chr2 : 25373872 .. 25376173 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACTCATCGGAAAAGGTGGCCAGAAACTACCCGTCAACCGGAGAGAATTACCCGGTGCCCTTATCGCCTCCACTGGCGGCCATATCCAAGAACTTGGAGCTCGCCAGAGCTATGGCTGCCTCCTCTAAATCCAGCCTCTTTGCTTTATCGGCAAACGATGTTATATACGAGGACGAGTGGCTTATTGCCGTCAATAAGCCTCAAGGAATCTACTGCGAAAGCGTTTTGGCCGCTGTTCCTCGTCTTCTCGGTGATTCGGCCATGGCTGGTTTGTGGATCTTACTGTGAAAGCGTTTTTCTTTTCAGACGAATTCGAATTTTAACTTGAACTTGGCAAGATGAATTCAATTTTACCCTATATTTTGAATTTGCTAATCGAATGGAAATGGTGGAACTGCAAGTTTTAACTTGCTCCTGTTTGAGGATTTATAAAAAGGTATAATCGCGTGTTTTCCATGGATTACAAAATGTAGACGACCCTGCAAAGGAAGAAGATATTAGGGCTGAATTTTTGTTGAAATTGACGAGTTTTTGAAAGATTTATTCATTATAGATCGTGTGCATTGATTTTCTAGATCATACTTTTGTACATTGATATGTAACTTGGTCTTGGTTGAAATTAGCTGAAATTAGTGGATAAATGTAATAGGAGTCTAACAGAAGTTTTAAAAATTGTGATGCTTACCTACGTGTAAGGTTCATTGTGATGAAATTTTGAAGTTTGGAGTAATAATTGACTCACCTTGCTAAGTTTTGGGTAGGATTTAATCTTTCATCATATTTGTTTACAAGGAATGATTTTCTGGAATTTGTTTTCTATTGTTTTAAGCTGCTTAAAAATGCAATTTCCCAAGTTCTATTTCTATTTCTACTTTTCTTTTTGAGAAACCTCGGTGTGAGGACGGTTTGGTCTTGTATTTGGTTCAACGTGTCTTTGTGGGCGTCTGTAATTAACCTTTTTGAAATTGTTCGTTTGGTCTTATATTGCTAAATTTATTTTCACTTTTGTGGGCTCCCTTTTTGTCTGCCCTTAATTCTTTTTACCTTTTTTTCTCAAATGAAAGTTCGGTTATTCTTTAAAAAAAGACAAAAATGATCAAAATTATCGATCCTTTTTCGTTTTGATGAAACTCATAGTCTAATGGTTTTTCAAGAGAGAGACAAAAATCTATCTCTACCGTTTTTTAGAATGAGCATTATTTTTAACTTAACTGTCAAAGAAGGCTATAAATTATGTCATCAAATTATATGGTATTCAAGTTTTCTGGGGTGCTTTGTGGTATATAGATATCATGATAGGTGGGCATGCTCTGGTAGTTTGATATGAATACATTTACTTATAAGCGAGAGCGAGTAATTGATTTCTTTTTCTTTCCCTGCATTGCCAGAACTAGCCATGTTGCTGATTGTTAGACAGTAAATATAAATGGTTTAGATGTATCCTGATTGTTGAAGAGAGAGATGTTTGAATTTGTCTGAAGTGTTTTAACGTTTGTCTAAAACAATGCCATGTAATTACATCTTTTGCTTATTCTATCATTATCGAGTTCTTGGGAGTGTTCTTTTCTCAGATTCTTTATATGCAGGGATCAAAACCAGTCTGCCAGAGCTTCATCTTGCTAACCGCCTCGATCGTGACACAAGTGGGGTTATGGTTATAACTAAGTCACATAAAGTTGCTTCTAAATTAGTGAAGGCATTTACTGACCACACAGTTTCAAAATCATATATCGCCTTCTGTGTTGGCTCTACTCCAAAGTGGAAAAAAATCAACGTCAAATCTGGTCATGGAAGGTCGAAGTTTGGGGTCTGGCGTGTCTATGCTGCAGCTGATGTGGGTCGTTCCTTACCTGGCGGTTCCGTAGTCAGAGACATGGAAACATATTTTGAAGTACTATCTGTAAATGGAAAAAATGTCATGGAGGGATTTCAAAAATTTAGGAAACATGAAGAAGAAACTATTGTAGTCCAAACAAAATCTCTGGTGGAAATTGATGGTCAAAAGGACGAGATCTTGATAAGAGCACGACCTTGCAGTGGAAGAACTCATCAAATTCGTCTGCACTGCCAATATCTTGGAATTCCAATAAGAGGGGATGTGAAATATGAGGGTGTTACTGAGTGGAATGGAAAAGTTTACGATAGCCATGAGCTTCATGCTGAAAGCTTGTATTTTGTGCACCCTGTTACAGGTATTCCTCTCAAACTACAAGCTCCTCTACCATCATGGGCCAGCCAAGCATTGCAGCCCCAACAAGAAGTGAGTTCTCCAACATCCTTCAAACCTATGCCTTAA

mRNA sequence

ATGGCGGACTCATCGGAAAAGGTGGCCAGAAACTACCCGTCAACCGGAGAGAATTACCCGGTGCCCTTATCGCCTCCACTGGCGGCCATATCCAAGAACTTGGAGCTCGCCAGAGCTATGGCTGCCTCCTCTAAATCCAGCCTCTTTGCTTTATCGGCAAACGATGTTATATACGAGGACGAGTGGCTTATTGCCGTCAATAAGCCTCAAGGAATCTACTGCGAAAGCGTTTTGGCCGCTGTTCCTCGTCTTCTCGGTGATTCGGCCATGGCTGGGATCAAAACCAGTCTGCCAGAGCTTCATCTTGCTAACCGCCTCGATCGTGACACAAGTGGGGTTATGGTTATAACTAAGTCACATAAAGTTGCTTCTAAATTAGTGAAGGCATTTACTGACCACACAGTTTCAAAATCATATATCGCCTTCTGTGTTGGCTCTACTCCAAAGTGGAAAAAAATCAACGTCAAATCTGGTCATGGAAGGTCGAAGTTTGGGGTCTGGCGTGTCTATGCTGCAGCTGATGTGGGTCGTTCCTTACCTGGCGGTTCCGTAGTCAGAGACATGGAAACATATTTTGAAGTACTATCTGTAAATGGAAAAAATGTCATGGAGGGATTTCAAAAATTTAGGAAACATGAAGAAGAAACTATTGTAGTCCAAACAAAATCTCTGGTGGAAATTGATGGTCAAAAGGACGAGATCTTGATAAGAGCACGACCTTGCAGTGGAAGAACTCATCAAATTCGTCTGCACTGCCAATATCTTGGAATTCCAATAAGAGGGGATGTGAAATATGAGGGTGTTACTGAGTGGAATGGAAAAGTTTACGATAGCCATGAGCTTCATGCTGAAAGCTTGTATTTTGTGCACCCTGTTACAGGTATTCCTCTCAAACTACAAGCTCCTCTACCATCATGGGCCAGCCAAGCATTGCAGCCCCAACAAGAAGTGAGTTCTCCAACATCCTTCAAACCTATGCCTTAA

Coding sequence (CDS)

ATGGCGGACTCATCGGAAAAGGTGGCCAGAAACTACCCGTCAACCGGAGAGAATTACCCGGTGCCCTTATCGCCTCCACTGGCGGCCATATCCAAGAACTTGGAGCTCGCCAGAGCTATGGCTGCCTCCTCTAAATCCAGCCTCTTTGCTTTATCGGCAAACGATGTTATATACGAGGACGAGTGGCTTATTGCCGTCAATAAGCCTCAAGGAATCTACTGCGAAAGCGTTTTGGCCGCTGTTCCTCGTCTTCTCGGTGATTCGGCCATGGCTGGGATCAAAACCAGTCTGCCAGAGCTTCATCTTGCTAACCGCCTCGATCGTGACACAAGTGGGGTTATGGTTATAACTAAGTCACATAAAGTTGCTTCTAAATTAGTGAAGGCATTTACTGACCACACAGTTTCAAAATCATATATCGCCTTCTGTGTTGGCTCTACTCCAAAGTGGAAAAAAATCAACGTCAAATCTGGTCATGGAAGGTCGAAGTTTGGGGTCTGGCGTGTCTATGCTGCAGCTGATGTGGGTCGTTCCTTACCTGGCGGTTCCGTAGTCAGAGACATGGAAACATATTTTGAAGTACTATCTGTAAATGGAAAAAATGTCATGGAGGGATTTCAAAAATTTAGGAAACATGAAGAAGAAACTATTGTAGTCCAAACAAAATCTCTGGTGGAAATTGATGGTCAAAAGGACGAGATCTTGATAAGAGCACGACCTTGCAGTGGAAGAACTCATCAAATTCGTCTGCACTGCCAATATCTTGGAATTCCAATAAGAGGGGATGTGAAATATGAGGGTGTTACTGAGTGGAATGGAAAAGTTTACGATAGCCATGAGCTTCATGCTGAAAGCTTGTATTTTGTGCACCCTGTTACAGGTATTCCTCTCAAACTACAAGCTCCTCTACCATCATGGGCCAGCCAAGCATTGCAGCCCCAACAAGAAGTGAGTTCTCCAACATCCTTCAAACCTATGCCTTAA

Protein sequence

MADSSEKVARNYPSTGENYPVPLSPPLAAISKNLELARAMAASSKSSLFALSANDVIYEDEWLIAVNKPQGIYCESVLAAVPRLLGDSAMAGIKTSLPELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHTVSKSYIAFCVGSTPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRDMETYFEVLSVNGKNVMEGFQKFRKHEEETIVVQTKSLVEIDGQKDEILIRARPCSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNGKVYDSHELHAESLYFVHPVTGIPLKLQAPLPSWASQALQPQQEVSSPTSFKPMP

Homology

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BLAST of Cla019962 vs. Swiss-Prot
Match: PUS1_ORYSJ (RNA pseudouridine synthase 1 OS=Oryza sativa subsp. japonica GN=Os12g0560500 PE=2 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 4.2e-98
Identity = 182/300 (60.67%), Postives = 221/300 (73.67%), Query Frame = 1


Query: 14  STGENYPVPLSPPLAAISKNLELARAMAASSKSSLFALSANDVIYEDEWLIAVNKPQGIY 73
           +TGE YPVP+SPP  A SK++EL RAM AS++S+  A S+  V++EDEWL  V+KP G+Y
Sbjct: 47  ATGE-YPVPVSPPYPAASKDVELRRAMTASARSA--AYSSAPVVFEDEWLAVVDKPAGVY 106

Query: 74  CESVLAAVPRLLGDSAMAGIKTSLPELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDH 133
           C+++L+A+P     +A  G + + P LHLANRLDRDTSG+MVITK +KVA KLVKAFT+H
Sbjct: 107 CDALLSALPC---SAATLGDEATKPNLHLANRLDRDTSGLMVITKCNKVAGKLVKAFTEH 166

Query: 134 TVSKSYIAFCVGSTPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRDMETYFE 193
            V K+Y+A C+G  P W+KI + SGHGRSK G WRVYA +DVGRSLPGGSVVRDM T FE
Sbjct: 167 KVKKTYLALCIGYPPAWEKIKICSGHGRSKHGAWRVYAMSDVGRSLPGGSVVRDMSTRFE 226

Query: 194 VLSVNGKNVMEGFQKFRKHEEETIVVQTKSLVEIDGQKDE----ILIRARPCSGRTHQIR 253
           VL +NGK        F   E E+I VQ K+  ++    DE    IL+RA P SGRTHQIR
Sbjct: 227 VLGINGKGQFREPSNFEVDETESITVQEKA-ADLTSDGDEKNSIILVRAYPQSGRTHQIR 286

Query: 254 LHCQYLGIPIRGDVKYEGVTEWNGKVYDSHELHAESLYFVHPVTGIPLKLQAPLPSWASQ 310
           LHCQYLG PIRGDVKY GV EWNG  YD H LHAESL FVHPVTG+P+  ++PLPSWA++
Sbjct: 287 LHCQYLGFPIRGDVKYSGVIEWNGVDYDGHALHAESLSFVHPVTGLPVTFRSPLPSWANE 339

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BLAST of Cla019962 vs. Swiss-Prot
Match: PUS1_ARATH (RNA pseudouridine synthase 1 OS=Arabidopsis thaliana GN=At1g56345 PE=2 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.2e-95
Identity = 175/293 (59.73%), Postives = 217/293 (74.06%), Query Frame = 1


Query: 18  NYPVPLSPPLAAISKNLELARAMAASSKSSLFALSANDVIYEDEWLIAVNKPQGIYCESV 77
           NYP P+S P   ISK++EL RAM ASSKSSLF L+ +D++YEDE+L+AVNKP+G+YCE+V
Sbjct: 39  NYPKPISAPPPPISKDIELRRAMEASSKSSLFNLTRDDILYEDEYLMAVNKPKGVYCEAV 98

Query: 78  LAAVPRLLGDSAMAGIKTSLPELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHTVSK 137
           L + P+++ DS+         E HLANRLDRDTSGVM+ITKSHKVA+KLVKAFT+H + K
Sbjct: 99  LRSAPQIVLDSSS--------EYHLANRLDRDTSGVMIITKSHKVAAKLVKAFTEHKIRK 158

Query: 138 SYIAFCVGSTPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRDMETYFEVLSV 197
           SYIA C+GS+P W+++ V SGHGRSK G WRVYAA DVGR LPGGS VRDMET FEV+SV
Sbjct: 159 SYIALCIGSSPNWRRVTVSSGHGRSKHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSV 218

Query: 198 NGKNVMEGFQKFRKHEEETIVVQTKSLVEIDGQKDE--ILIRARPCSGRTHQIRLHCQYL 257
           N    ++      +     IV + +  +   G  D+  +++RA P SGRTHQIRLHCQYL
Sbjct: 219 NS---VKNESCELEDVNHVIVAEGERELSCGGDDDDVVVVVRAFPRSGRTHQIRLHCQYL 278

Query: 258 GIPIRGDVKYEGVTEWNGKVYDSHELHAESLYFVHPVTGIPLKLQAPLPSWAS 309
           GIPIRGDVKY GV EWNG+ ++ HELHAE L   HPVTG  + ++APLP WA+
Sbjct: 279 GIPIRGDVKYHGVYEWNGRTFEGHELHAECLSLDHPVTGDSIVIRAPLPYWAA 320

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BLAST of Cla019962 vs. Swiss-Prot
Match: RLUC_VIBVU (Ribosomal large subunit pseudouridine synthase C OS=Vibrio vulnificus (strain CMCP6) GN=rluC PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-17
Identity = 83/296 (28.04%), Postives = 127/296 (42.91%), Query Frame = 1


Query: 25  PPLAAISKNLELARAMAASSKSSLFALSANDVIYEDEWLIAVNKPQGIYCESVLAAVPRL 84
           PP+    K+ E A     S+K +  A   + +IYED+ L+ +NKP G             
Sbjct: 69  PPVTLEKKDPETA----PSTKLNKVAELQDLIIYEDDHLLVLNKPSGTAVHGGSG----- 128

Query: 85  LGDSAMAGIKTSLPE---LHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHTVSKSYIA 144
           L   A+  ++   PE   L L +R+DRDTSG++++ K       L   F + TV K Y A
Sbjct: 129 LKFGAIEALRALRPEARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYFA 188

Query: 145 FCVGSTPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRDMETYFEVLSVNGKN 204
             +G   +WK                +V  A  +   +   S+VR        ++ NGK 
Sbjct: 189 LVMG---EWKNS-------------CKVVNAPLLKNEV--NSIVR--------VNPNGKP 248

Query: 205 VMEGFQKFRKHEEETIVVQTKSLVEIDGQKDEILIRARPCSGRTHQIRLHCQYLGIPIR- 264
               F+   K  + T                  L++A P +GRTHQIR+H QY G PI  
Sbjct: 249 SETRFKVIEKFPQAT------------------LVQASPITGRTHQIRVHTQYSGHPIAW 308

Query: 265 ----GDVKYEGVTEWNGKVYDSHELHAESLYFVHPVTGIPLKLQAPLPSWASQALQ 313
               GD +++  T  +G   +   LHA ++ F HP T  P+++ AP+     + +Q
Sbjct: 309 DDRYGDRRFDAYTAQHG--LNRLFLHAANIRFTHPATEQPMEINAPMGEQLEKVVQ 309

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BLAST of Cla019962 vs. Swiss-Prot
Match: RLUC_VIBCH (Ribosomal large subunit pseudouridine synthase C OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rluC PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.7e-17
Identity = 81/300 (27.00%), Postives = 124/300 (41.33%), Query Frame = 1


Query: 25  PPLAAISKNLELARAMAASSKSSLFALSANDVIYEDEWLIAVNKPQGIYCESVLAAVPRL 84
           PP+    K  E A     S+K S  A   + ++YED+ L+ +NKP G             
Sbjct: 69  PPVTVEVKENEPA---PPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSG----- 128

Query: 85  LGDSAMAGIKTSLPE---LHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHTVSKSYIA 144
           L   A+  ++   P+   L L +R+DRDTSG++++ K       L   F + TV K Y A
Sbjct: 129 LHFGAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYA 188

Query: 145 FCVGSTPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRDMETYFEVLSVNGKN 204
             +G    W                       D    +    ++++       ++ NGK 
Sbjct: 189 LVMGH---W-----------------------DAECKVVNAPLLKNEVNSIVRVNPNGKP 248

Query: 205 VMEGFQKFRKHEEETIVVQTKSLVEIDGQKDEILIRARPCSGRTHQIRLHCQYLGIPIR- 264
               F+   K  E T                  L++A P +GRTHQIR+H QY+G PI  
Sbjct: 249 SETRFRILEKFAEAT------------------LVQASPVTGRTHQIRVHTQYMGHPIAW 308

Query: 265 ----GDVKYEGVTEWNGKVYDSHELHAESLYFVHPVTGIPLKLQAPLPSWASQALQPQQE 317
               GD +++  T   G   +   LHA ++ FVHP +   L++ APL +   QAL   ++
Sbjct: 309 DDRYGDRRFDAYTAQFG--IERLFLHAANIQFVHPASEKKLEIHAPLEAHLEQALTKMRQ 314

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BLAST of Cla019962 vs. Swiss-Prot
Match: RLUD_XANAC (Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas axonopodis pv. citri (strain 306) GN=rluD PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-16
Identity = 77/267 (28.84%), Postives = 115/267 (43.07%), Query Frame = 1


Query: 56  VIYEDEWLIAVNKPQGIYCESVLAAVPR------LLGDSAMAGIKTSLPELHLANRLDRD 115
           V+YEDE ++ ++KP G+          R      L  D A+A    S+P   + +RLD+D
Sbjct: 92  VLYEDEQVLVIDKPAGLVVHPGAGNPDRTLVNALLFRDPALA----SVPRAGVVHRLDKD 151

Query: 116 TSGVMVITKSHKVASKLVKAFTDHTVSKSYIAFCVGSTPKWKKINVK-SGHGRSKFGVWR 175
           TSGVMV+ ++ +  + LV+  +   V + Y+A  VG+       N     H R +  +  
Sbjct: 152 TSGVMVVARTVQAQTALVEQLSAREVHRQYLAVVVGALVSGGTANAPIDRHPRDRLKM-- 211

Query: 176 VYAAADVGRSLPGGSVVRDMETYFEVLSVNGKNVMEGFQKFRKHEEETIVVQTKSLVEID 235
             A  D G         RD  T++ +            ++FR H                
Sbjct: 212 --AVRDDG---------RDAVTHYRLR-----------ERFRAHT--------------- 271

Query: 236 GQKDEILIRARPCSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNGKVYDS--HE------ 295
                  +  R  +GRTHQIR+H  +L  PI GD  Y G  +      D   HE      
Sbjct: 272 ------ALECRLETGRTHQIRVHMAHLKSPIVGDPLYGGALKLPKGATDELVHELRTFKR 309

Query: 296 --LHAESLYFVHPVTGIPLKLQAPLPS 306
             LHAE+L F+HPV+G P++  AP+P+
Sbjct: 332 QALHAETLEFLHPVSGEPVRASAPVPA 309

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BLAST of Cla019962 vs. TrEMBL
Match: A0A0A0LJY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G033960 PE=4 SV=1)

HSP 1 Score: 593.2 bits (1528), Expect = 1.9e-166
Identity = 299/328 (91.16%), Postives = 307/328 (93.60%), Query Frame = 1


Query: 1   MADSSEKVARNYPSTGENYPVPLSPPLAAISKNLELARAMAASSKSSLFALSANDVIYED 60
           M DSSE V  N PST ENYPVPLSPPL AISKNLELARAM ASSKSSL+ALSANDVIYED
Sbjct: 39  MTDSSEPVTGNCPSTAENYPVPLSPPLPAISKNLELARAMVASSKSSLYALSANDVIYED 98

Query: 61  EWLIAVNKPQGIYCESVLAAVPRLLGDSAMAGIKTSLPELHLANRLDRDTSGVMVITKSH 120
           EWLIAVNKPQGIYCE+VLAAVPRLLGDSA AGIKTSLPELHLANRLDRDTSGVMVITKSH
Sbjct: 99  EWLIAVNKPQGIYCENVLAAVPRLLGDSANAGIKTSLPELHLANRLDRDTSGVMVITKSH 158

Query: 121 KVASKLVKAFTDHTVSKSYIAFCVGSTPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLP 180
           KVASKLVKAFTDHTVSKSYIAFCVG++PKWKKINVKSGHGRSKFGVWRVYAAADVGRSLP
Sbjct: 159 KVASKLVKAFTDHTVSKSYIAFCVGTSPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLP 218

Query: 181 GGSVVRDMETYFEVLSVNGKNVMEGFQKFRKHEEETIVVQTKSLVEIDGQKDEILIRARP 240
           GGSVVRDMETYFEVLSVNGKN ME  QKFR+ EEETIVV TKSLV+ID  KDEILIRARP
Sbjct: 219 GGSVVRDMETYFEVLSVNGKNTMEELQKFRRGEEETIVVHTKSLVDIDSHKDEILIRARP 278

Query: 241 CSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNGKVYDSHELHAESLYFVHPVTGIPLKLQ 300
            SGRTHQIRLHCQYLGIPIRGDVKYEGVTEWN K+YDSHELHAESLYFVHPVTGIPLKLQ
Sbjct: 279 RSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNEKIYDSHELHAESLYFVHPVTGIPLKLQ 338

Query: 301 APLPSWASQALQPQQ-EVSSPTSFKPMP 328
           APLPSWASQALQPQQ EV+SP SFK MP
Sbjct: 339 APLPSWASQALQPQQHEVNSPQSFKTMP 366

[Close]

BLAST of Cla019962 vs. TrEMBL
Match: M5VZ97_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008866mg PE=4 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 4.4e-126
Identity = 220/311 (70.74%), Postives = 264/311 (84.89%), Query Frame = 1


Query: 3   DSSEKVARNYPSTGENYPVPLSPPLAAISKNLELARAMAASSKSSLFALSANDVIYEDEW 62
           D+    ++N   T +NYPVPLSPPL  ISK++ELARAM+ASSKSSLF+LS +DV++ED+W
Sbjct: 6   DAINPSSQNALQTSQNYPVPLSPPLPPISKHIELARAMSASSKSSLFSLSRDDVVFEDQW 65

Query: 63  LIAVNKPQGIYCESVLAAVPRLLGDSAMAGIKTSLPELHLANRLDRDTSGVMVITKSHKV 122
           LI VNKPQG+YCESVL +VP+LL DSA +G   +  ELHLANRLDRDTSG+MVITKSHKV
Sbjct: 66  LIVVNKPQGVYCESVLESVPQLLCDSAESGTPANQLELHLANRLDRDTSGLMVITKSHKV 125

Query: 123 ASKLVKAFTDHTVSKSYIAFCVGSTPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLPGG 182
           ASKLVKAFTDH +SK+YIA C+GS PKW++I +KSGHGRSKFG WRVYAA+DVGR+LPGG
Sbjct: 126 ASKLVKAFTDHKISKTYIARCIGSAPKWERITLKSGHGRSKFGAWRVYAASDVGRTLPGG 185

Query: 183 SVVRDMETYFEVLSVNGKNVMEGFQKFRKHEEETIVVQTKSLVEIDGQKDEILIRARPCS 242
           S+VRDMET FEVLS+NG+  ++   +F+K E  TIVVQ K++++ D +KDEIL+RARP S
Sbjct: 186 SMVRDMETSFEVLSINGQGSLKEPSEFKKDEANTIVVQEKAVIDKDTKKDEILVRARPRS 245

Query: 243 GRTHQIRLHCQYLGIPIRGDVKYEGVTEWNGKVYDSHELHAESLYFVHPVTGIPLKLQAP 302
           GRTHQIRLHCQYLGI IRGDVKYEGV EW G+ YD HELHAESL F HP+TG+P+  QAP
Sbjct: 246 GRTHQIRLHCQYLGISIRGDVKYEGVYEWKGRTYDGHELHAESLSFEHPITGLPVMFQAP 305

Query: 303 LPSWASQALQP 314
           +PSWASQALQP
Sbjct: 306 VPSWASQALQP 316

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BLAST of Cla019962 vs. TrEMBL
Match: A0A067GSR2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018524mg PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.3e-122
Identity = 223/320 (69.69%), Postives = 262/320 (81.88%), Query Frame = 1


Query: 1   MADSSEKVARNYPSTGENYPVPLSPPLAAISKNLELARAMAASSKSSLFALSANDVIYED 60
           M++ +E  ++N P T +NYP PLSPPL AISK++EL RAM+ASSKSSL+ LS +DV+YED
Sbjct: 31  MSNPTEPTSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYED 90

Query: 61  EWLIAVNKPQGIYCESVLAAVPRLL-GDSAMA-------GIKTSLPELHLANRLDRDTSG 120
           EWL+AVNKPQG+YCESVLA+VP LL GDSA +       G K +L ELHLANRLDRDTSG
Sbjct: 91  EWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSG 150

Query: 121 VMVITKSHKVASKLVKAFTDHTVSKSYIAFCVGSTPKWKKINVKSGHGRSKFGVWRVYAA 180
           VMVITKSHKVASKLVKAFTDH VSK+YIA C+G  PKWK+I + SGHGRSKFG WRVYAA
Sbjct: 151 VMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAA 210

Query: 181 ADVGRSLPGGSVVRDMETYFEVLSVNGKNVMEGFQKFRKHEEETIVVQTKSLVEIDGQKD 240
           +DVGR LPGGSVVRDM T FEVLSVNG+   +   + ++HEE  IVV+ K++++ D +K+
Sbjct: 211 SDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLDADAKKN 270

Query: 241 EILIRARPCSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNGKVYDSHELHAESLYFVHPV 300
           EIL+RA P SGRTHQIRLHCQYLGI IRGDVKYEGV EWNGK YD HELHAESL F HPV
Sbjct: 271 EILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPV 330

Query: 301 TGIPLKLQAPLPSWASQALQ 313
           TG P+ +QAPLP W ++ALQ
Sbjct: 331 TGCPVMVQAPLPLWGTEALQ 350

[Close]

BLAST of Cla019962 vs. TrEMBL
Match: V4TAZ7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001637mg PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 1.6e-120
Identity = 220/320 (68.75%), Postives = 256/320 (80.00%), Query Frame = 1


Query: 1   MADSSEKVARNYPSTGENYPVPLSPPLAAISKNLELARAMAASSKSSLFALSANDVIYED 60
           M + +E    N P   +NYP PLSPPL AISK++EL RAM+ASSKSSL+ LS +DV+YED
Sbjct: 34  MLNPTEPTCENAPQIQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYED 93

Query: 61  EWLIAVNKPQGIYCESVLAAVPRLL-GDSAMA-------GIKTSLPELHLANRLDRDTSG 120
           EW +AVNKPQG+YCESVLA+VP  L GDSA +       G K +L ELHLANRLDRDTSG
Sbjct: 94  EWFVAVNKPQGVYCESVLASVPCFLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSG 153

Query: 121 VMVITKSHKVASKLVKAFTDHTVSKSYIAFCVGSTPKWKKINVKSGHGRSKFGVWRVYAA 180
           VMVITKSHKVASKLVKAFTDH VSK+YIA C+G  PKWK+I + SGHGRSKFG WRVYAA
Sbjct: 154 VMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAA 213

Query: 181 ADVGRSLPGGSVVRDMETYFEVLSVNGKNVMEGFQKFRKHEEETIVVQTKSLVEIDGQKD 240
           +DVGR LPGGSVVRDM T FEVLSVNG+   +   + ++HEE  IVV+ K++++ D +K+
Sbjct: 214 SDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAVLDADAKKN 273

Query: 241 EILIRARPCSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNGKVYDSHELHAESLYFVHPV 300
           EIL+RA P SGRTHQIRLHCQYLGI IRGDVKYEGV EWNGK YD HELHAESL F HPV
Sbjct: 274 EILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPV 333

Query: 301 TGIPLKLQAPLPSWASQALQ 313
           TG P+ +QAPLP W ++ALQ
Sbjct: 334 TGCPVMVQAPLPLWGTEALQ 353

[Close]

BLAST of Cla019962 vs. TrEMBL
Match: A0A061F426_THECC (Pseudouridine synthase family protein isoform 2 OS=Theobroma cacao GN=TCM_026756 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 2.1e-120
Identity = 212/306 (69.28%), Postives = 255/306 (83.33%), Query Frame = 1


Query: 13  PSTGENYPVPLSPPLAAISKNLELARAMAASSKSSLFALSANDVIYEDEWLIAVNKPQGI 72
           P++ +NYP PLSPPL +ISK++ELARAM ASSKSSLF LS +D++YEDEWLIAVNKPQGI
Sbjct: 5   PNSHQNYPTPLSPPLPSISKDIELARAMTASSKSSLFELSRSDILYEDEWLIAVNKPQGI 64

Query: 73  YCESVLAAVPRLLGDSAMA-----GIKTSLPELHLANRLDRDTSGVMVITKSHKVASKLV 132
           YC+SVLA++PR L DS ++     G + S  ELHLANRLDRDTSG+MVITKSHKVA+ LV
Sbjct: 65  YCDSVLASIPRFLSDSTVSDRLSDGNQASPFELHLANRLDRDTSGIMVITKSHKVAAALV 124

Query: 133 KAFTDHTVSKSYIAFCVGSTPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRD 192
           KAFT+H V K+Y+AFC+GS PK ++I +KSGHGRSKFG WRVYAA DVGR LPGGS+VRD
Sbjct: 125 KAFTNHMVHKTYVAFCIGSAPKSERITIKSGHGRSKFGAWRVYAAGDVGRKLPGGSIVRD 184

Query: 193 METYFEVLSVNGKNVMEGFQKFRKHEEETIVVQTKSLVEIDGQKDEILIRARPCSGRTHQ 252
           M T FEVLS+NG+   +   +  K EE +++V+ K+++++D QKDEIL+RA P SGRTHQ
Sbjct: 185 MGTTFEVLSINGQQSYKEPSESVKDEETSVIVEEKAVIDVDAQKDEILVRAFPRSGRTHQ 244

Query: 253 IRLHCQYLGIPIRGDVKYEGVTEWNGKVYDSHELHAESLYFVHPVTGIPLKLQAPLPSWA 312
           IRLHCQYLGIPIRGDVKYEGV EW G+ YD+HELHAESL F HPVTG P+ +QAPLP WA
Sbjct: 245 IRLHCQYLGIPIRGDVKYEGVYEWKGRRYDAHELHAESLSFQHPVTGFPVMIQAPLPLWA 304

Query: 313 SQALQP 314
           SQALQP
Sbjct: 305 SQALQP 310

[Close]

BLAST of Cla019962 vs. NCBI nr
Match: gi|659070151|ref|XP_008453651.1| (PREDICTED: RNA pseudouridine synthase 1 [Cucumis melo])

HSP 1 Score: 596.3 bits (1536), Expect = 3.3e-167
Identity = 299/328 (91.16%), Postives = 309/328 (94.21%), Query Frame = 1


Query: 1   MADSSEKVARNYPSTGENYPVPLSPPLAAISKNLELARAMAASSKSSLFALSANDVIYED 60
           M DSSE V  N PSTGENYPVPLSPPL AISKNLELARAMAASSKSSLFALSANDVIYED
Sbjct: 1   MTDSSEPVTGNCPSTGENYPVPLSPPLPAISKNLELARAMAASSKSSLFALSANDVIYED 60

Query: 61  EWLIAVNKPQGIYCESVLAAVPRLLGDSAMAGIKTSLPELHLANRLDRDTSGVMVITKSH 120
           EWLIAVNKPQGIYCE+VLAAVPRLL DSA AGIKT+LPELHLANRLDRDTSGVMVITKSH
Sbjct: 61  EWLIAVNKPQGIYCENVLAAVPRLLCDSANAGIKTNLPELHLANRLDRDTSGVMVITKSH 120

Query: 121 KVASKLVKAFTDHTVSKSYIAFCVGSTPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLP 180
           KVASKLVKAFTDHTVSKSYIAFCVG++PKWKKI+VKSGHGRSKFGVWRVYAAADVGRSLP
Sbjct: 121 KVASKLVKAFTDHTVSKSYIAFCVGTSPKWKKIHVKSGHGRSKFGVWRVYAAADVGRSLP 180

Query: 181 GGSVVRDMETYFEVLSVNGKNVMEGFQKFRKHEEETIVVQTKSLVEIDGQKDEILIRARP 240
           GGS+VRDMETYFEVLSVNGKN ME  QKFRK EEETIVV TKSLV+ID QKDE+LIRARP
Sbjct: 181 GGSIVRDMETYFEVLSVNGKNTMEELQKFRKEEEETIVVHTKSLVDIDSQKDEVLIRARP 240

Query: 241 CSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNGKVYDSHELHAESLYFVHPVTGIPLKLQ 300
            SGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNGK YDSHELHAESLYFVHP+TGIPLKLQ
Sbjct: 241 RSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNGKTYDSHELHAESLYFVHPITGIPLKLQ 300

Query: 301 APLPSWASQALQP-QQEVSSPTSFKPMP 328
           APLPSWASQALQP QQEV+SP SFK MP
Sbjct: 301 APLPSWASQALQPQQQEVNSPQSFKTMP 328

[Close]

BLAST of Cla019962 vs. NCBI nr
Match: gi|700205873|gb|KGN60992.1| (hypothetical protein Csa_2G033960 [Cucumis sativus])

HSP 1 Score: 593.2 bits (1528), Expect = 2.8e-166
Identity = 299/328 (91.16%), Postives = 307/328 (93.60%), Query Frame = 1


Query: 1   MADSSEKVARNYPSTGENYPVPLSPPLAAISKNLELARAMAASSKSSLFALSANDVIYED 60
           M DSSE V  N PST ENYPVPLSPPL AISKNLELARAM ASSKSSL+ALSANDVIYED
Sbjct: 39  MTDSSEPVTGNCPSTAENYPVPLSPPLPAISKNLELARAMVASSKSSLYALSANDVIYED 98

Query: 61  EWLIAVNKPQGIYCESVLAAVPRLLGDSAMAGIKTSLPELHLANRLDRDTSGVMVITKSH 120
           EWLIAVNKPQGIYCE+VLAAVPRLLGDSA AGIKTSLPELHLANRLDRDTSGVMVITKSH
Sbjct: 99  EWLIAVNKPQGIYCENVLAAVPRLLGDSANAGIKTSLPELHLANRLDRDTSGVMVITKSH 158

Query: 121 KVASKLVKAFTDHTVSKSYIAFCVGSTPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLP 180
           KVASKLVKAFTDHTVSKSYIAFCVG++PKWKKINVKSGHGRSKFGVWRVYAAADVGRSLP
Sbjct: 159 KVASKLVKAFTDHTVSKSYIAFCVGTSPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLP 218

Query: 181 GGSVVRDMETYFEVLSVNGKNVMEGFQKFRKHEEETIVVQTKSLVEIDGQKDEILIRARP 240
           GGSVVRDMETYFEVLSVNGKN ME  QKFR+ EEETIVV TKSLV+ID  KDEILIRARP
Sbjct: 219 GGSVVRDMETYFEVLSVNGKNTMEELQKFRRGEEETIVVHTKSLVDIDSHKDEILIRARP 278

Query: 241 CSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNGKVYDSHELHAESLYFVHPVTGIPLKLQ 300
            SGRTHQIRLHCQYLGIPIRGDVKYEGVTEWN K+YDSHELHAESLYFVHPVTGIPLKLQ
Sbjct: 279 RSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNEKIYDSHELHAESLYFVHPVTGIPLKLQ 338

Query: 301 APLPSWASQALQPQQ-EVSSPTSFKPMP 328
           APLPSWASQALQPQQ EV+SP SFK MP
Sbjct: 339 APLPSWASQALQPQQHEVNSPQSFKTMP 366

[Close]

BLAST of Cla019962 vs. NCBI nr
Match: gi|778667027|ref|XP_004144814.2| (PREDICTED: RNA pseudouridine synthase 1 [Cucumis sativus])

HSP 1 Score: 593.2 bits (1528), Expect = 2.8e-166
Identity = 299/328 (91.16%), Postives = 307/328 (93.60%), Query Frame = 1


Query: 1   MADSSEKVARNYPSTGENYPVPLSPPLAAISKNLELARAMAASSKSSLFALSANDVIYED 60
           M DSSE V  N PST ENYPVPLSPPL AISKNLELARAM ASSKSSL+ALSANDVIYED
Sbjct: 1   MTDSSEPVTGNCPSTAENYPVPLSPPLPAISKNLELARAMVASSKSSLYALSANDVIYED 60

Query: 61  EWLIAVNKPQGIYCESVLAAVPRLLGDSAMAGIKTSLPELHLANRLDRDTSGVMVITKSH 120
           EWLIAVNKPQGIYCE+VLAAVPRLLGDSA AGIKTSLPELHLANRLDRDTSGVMVITKSH
Sbjct: 61  EWLIAVNKPQGIYCENVLAAVPRLLGDSANAGIKTSLPELHLANRLDRDTSGVMVITKSH 120

Query: 121 KVASKLVKAFTDHTVSKSYIAFCVGSTPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLP 180
           KVASKLVKAFTDHTVSKSYIAFCVG++PKWKKINVKSGHGRSKFGVWRVYAAADVGRSLP
Sbjct: 121 KVASKLVKAFTDHTVSKSYIAFCVGTSPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLP 180

Query: 181 GGSVVRDMETYFEVLSVNGKNVMEGFQKFRKHEEETIVVQTKSLVEIDGQKDEILIRARP 240
           GGSVVRDMETYFEVLSVNGKN ME  QKFR+ EEETIVV TKSLV+ID  KDEILIRARP
Sbjct: 181 GGSVVRDMETYFEVLSVNGKNTMEELQKFRRGEEETIVVHTKSLVDIDSHKDEILIRARP 240

Query: 241 CSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNGKVYDSHELHAESLYFVHPVTGIPLKLQ 300
            SGRTHQIRLHCQYLGIPIRGDVKYEGVTEWN K+YDSHELHAESLYFVHPVTGIPLKLQ
Sbjct: 241 RSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNEKIYDSHELHAESLYFVHPVTGIPLKLQ 300

Query: 301 APLPSWASQALQPQQ-EVSSPTSFKPMP 328
           APLPSWASQALQPQQ EV+SP SFK MP
Sbjct: 301 APLPSWASQALQPQQHEVNSPQSFKTMP 328

[Close]

BLAST of Cla019962 vs. NCBI nr
Match: gi|595826525|ref|XP_007205588.1| (hypothetical protein PRUPE_ppa008866mg [Prunus persica])

HSP 1 Score: 459.1 bits (1180), Expect = 6.3e-126
Identity = 220/311 (70.74%), Postives = 264/311 (84.89%), Query Frame = 1


Query: 3   DSSEKVARNYPSTGENYPVPLSPPLAAISKNLELARAMAASSKSSLFALSANDVIYEDEW 62
           D+    ++N   T +NYPVPLSPPL  ISK++ELARAM+ASSKSSLF+LS +DV++ED+W
Sbjct: 6   DAINPSSQNALQTSQNYPVPLSPPLPPISKHIELARAMSASSKSSLFSLSRDDVVFEDQW 65

Query: 63  LIAVNKPQGIYCESVLAAVPRLLGDSAMAGIKTSLPELHLANRLDRDTSGVMVITKSHKV 122
           LI VNKPQG+YCESVL +VP+LL DSA +G   +  ELHLANRLDRDTSG+MVITKSHKV
Sbjct: 66  LIVVNKPQGVYCESVLESVPQLLCDSAESGTPANQLELHLANRLDRDTSGLMVITKSHKV 125

Query: 123 ASKLVKAFTDHTVSKSYIAFCVGSTPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLPGG 182
           ASKLVKAFTDH +SK+YIA C+GS PKW++I +KSGHGRSKFG WRVYAA+DVGR+LPGG
Sbjct: 126 ASKLVKAFTDHKISKTYIARCIGSAPKWERITLKSGHGRSKFGAWRVYAASDVGRTLPGG 185

Query: 183 SVVRDMETYFEVLSVNGKNVMEGFQKFRKHEEETIVVQTKSLVEIDGQKDEILIRARPCS 242
           S+VRDMET FEVLS+NG+  ++   +F+K E  TIVVQ K++++ D +KDEIL+RARP S
Sbjct: 186 SMVRDMETSFEVLSINGQGSLKEPSEFKKDEANTIVVQEKAVIDKDTKKDEILVRARPRS 245

Query: 243 GRTHQIRLHCQYLGIPIRGDVKYEGVTEWNGKVYDSHELHAESLYFVHPVTGIPLKLQAP 302
           GRTHQIRLHCQYLGI IRGDVKYEGV EW G+ YD HELHAESL F HP+TG+P+  QAP
Sbjct: 246 GRTHQIRLHCQYLGISIRGDVKYEGVYEWKGRTYDGHELHAESLSFEHPITGLPVMFQAP 305

Query: 303 LPSWASQALQP 314
           +PSWASQALQP
Sbjct: 306 VPSWASQALQP 316

[Close]

BLAST of Cla019962 vs. NCBI nr
Match: gi|645221686|ref|XP_008245928.1| (PREDICTED: RNA pseudouridine synthase 1 [Prunus mume])

HSP 1 Score: 454.1 bits (1167), Expect = 2.0e-124
Identity = 219/314 (69.75%), Postives = 265/314 (84.39%), Query Frame = 1


Query: 2   ADSSEKVARNYPSTGENYPVPLSPPLAAISKNLELARAMAASSKSSLFALSANDVIYEDE 61
           +D+    ++N     +NYPVPLSPPL  ISK++ELARAM+ASSKSSLF+LS +DV++ED+
Sbjct: 5   SDAINPSSQNALQISQNYPVPLSPPLPPISKHIELARAMSASSKSSLFSLSRDDVVFEDQ 64

Query: 62  WLIAVNKPQGIYCESVLAAVPRLLGDSA--MAGIKTSLPELHLANRLDRDTSGVMVITKS 121
           WLI VNKPQG+YCESVL +VP+LL DSA  +AG   +  ELHLANRLDRDTSG+MVITKS
Sbjct: 65  WLIVVNKPQGVYCESVLESVPQLLCDSAESVAGTPANQLELHLANRLDRDTSGLMVITKS 124

Query: 122 HKVASKLVKAFTDHTVSKSYIAFCVGSTPKWKKINVKSGHGRSKFGVWRVYAAADVGRSL 181
           HKVASKLVKAFTDH +SK+YIA C+GS PKW++I +KSGHGRSKFG WRVYAA+DVGR+L
Sbjct: 125 HKVASKLVKAFTDHKISKTYIARCIGSAPKWERITLKSGHGRSKFGAWRVYAASDVGRTL 184

Query: 182 PGGSVVRDMETYFEVLSVNGKNVMEGFQKFRKHEEETIVVQTKSLVEIDGQKDEILIRAR 241
           PGGS+VRDMET FEVLS+NG+  ++   +F+K E  T+VVQ K++++ D +KDEIL+RAR
Sbjct: 185 PGGSMVRDMETSFEVLSINGQGSLKEPSEFKKDEANTVVVQEKAVIDKDTKKDEILVRAR 244

Query: 242 PCSGRTHQIRLHCQYLGIPIRGDVKYEGVTEWNGKVYDSHELHAESLYFVHPVTGIPLKL 301
           P SGRTHQIRLHCQYLGI IRGDVKYEGV EW G+ YD HELHAESL F HP+TG+P+  
Sbjct: 245 PRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWKGRTYDGHELHAESLSFEHPITGLPVMF 304

Query: 302 QAPLPSWASQALQP 314
           QAP+PSWASQALQP
Sbjct: 305 QAPVPSWASQALQP 318

The following BLAST results are available for this feature:

BLAST of Cla019962 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PUS1_ORYSJ	4.2e-98	60.67	RNA pseudouridine synthase 1 OS=Oryza sativa subsp. japonica GN=Os12g0560500 PE=...	[more]
PUS1_ARATH	1.2e-95	59.73	RNA pseudouridine synthase 1 OS=Arabidopsis thaliana GN=At1g56345 PE=2 SV=1	[more]
RLUC_VIBVU	1.6e-17	28.04	Ribosomal large subunit pseudouridine synthase C OS=Vibrio vulnificus (strain CM...	[more]
RLUC_VIBCH	3.7e-17	27.00	Ribosomal large subunit pseudouridine synthase C OS=Vibrio cholerae serotype O1 ...	[more]
RLUD_XANAC	1.4e-16	28.84	Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas axonopodis pv. c...	[more]

BLAST of Cla019962 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJY6_CUCSA	1.9e-166	91.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G033960 PE=4 SV=1	[more]
M5VZ97_PRUPE	4.4e-126	70.74	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008866mg PE=4 SV=1	[more]
A0A067GSR2_CITSI	1.3e-122	69.69	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018524mg PE=4 SV=1	[more]
V4TAZ7_9ROSI	1.6e-120	68.75	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001637mg PE=4 SV=1	[more]
A0A061F426_THECC	2.1e-120	69.28	Pseudouridine synthase family protein isoform 2 OS=Theobroma cacao GN=TCM_026756...	[more]

BLAST of Cla019962 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070151\|ref\|XP_008453651.1\|	3.3e-167	91.16	PREDICTED: RNA pseudouridine synthase 1 [Cucumis melo]	[more]
gi\|700205873\|gb\|KGN60992.1\|	2.8e-166	91.16	hypothetical protein Csa_2G033960 [Cucumis sativus]	[more]
gi\|778667027\|ref\|XP_004144814.2\|	2.8e-166	91.16	PREDICTED: RNA pseudouridine synthase 1 [Cucumis sativus]	[more]
gi\|595826525\|ref\|XP_007205588.1\|	6.3e-126	70.74	hypothetical protein PRUPE_ppa008866mg [Prunus persica]	[more]
gi\|645221686\|ref\|XP_008245928.1\|	2.0e-124	69.75	PREDICTED: RNA pseudouridine synthase 1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006145	PsdUridine_synth_RsuA/RluD
IPR006224	PsdUridine_synth_RluC/D_CS
IPR020103	PsdUridine_synth_cat_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0001522	pseudouridine synthesis
GO:0009451	RNA modification

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0009982	pseudouridine synthase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU41345	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla019962	Cla019962.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU41345	WMU41345	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006145	Pseudouridine synthase, RsuA/RluB/C/D/E/F	PFAM	PF00849	PseudoU_synth_2	coord: 63..253 score: 4.8
IPR006224	Pseudouridine synthase, RluC/RluD, conserved site	PROSITE	PS01129	PSI_RLU	coord: 103..117 scor
IPR020103	Pseudouridine synthase, catalytic domain	unknown	SSF55120	Pseudouridine synthase	coord: 54..197 score: 4.0E-45coord: 230..312 score: 4.0
None	No IPR available	PANTHER	PTHR11079	CYTOSINE DEAMINASE	coord: 29..34 score: 6.3E-134coord: 55..196 score: 6.3E-134coord: 227..325 score: 6.3E
None	No IPR available	PANTHER	PTHR11079:SF82	RNA PSEUDOURIDINE SYNTHASE 1	coord: 29..34 score: 6.3E-134coord: 55..196 score: 6.3E-134coord: 227..325 score: 6.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla019962	Cla97C02G040790	Watermelon (97103) v2	wmwmbB316
Cla019962	Csa2G033960	Cucumber (Chinese Long) v2	cuwmB147
Cla019962	MELO3C004192	Melon (DHL92) v3.5.1	mewmB418
Cla019962	ClCG02G014990	Watermelon (Charleston Gray)	wcgwmB197
Cla019962	CSPI02G04630	Wild cucumber (PI 183967)	cpiwmB149
Cla019962	Cucsa.090740	Cucumber (Gy14) v1	cgywmB105
Cla019962	CmaCh12G010340	Cucurbita maxima (Rimu)	cmawmB170
Cla019962	CmoCh12G010420	Cucurbita moschata (Rifu)	cmowmB156
Cla019962	Lsi11G006250	Bottle gourd (USVL1VR-Ls)	lsiwmB107
Cla019962	Cp4.1LG07g08590	Cucurbita pepo (Zucchini)	cpewmB806
Cla019962	CsGy2G004770	Cucumber (Gy14) v2	cgybwmB140
Cla019962	MELO3C004192.2	Melon (DHL92) v3.6.1	medwmB407
Cla019962	Carg23265	Silver-seed gourd	carwmB0885
Cla019962	CsaV3_2G007010	Cucumber (Chinese Long) v3	cucwmB159
Cla019962	Bhi06G001328	Wax gourd	wgowmB135

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla019962	Melon (DHL92) v3.5.1	mewmB282
Cla019962	Watermelon (Charleston Gray)	wcgwmB242
Cla019962	Watermelon (Charleston Gray)	wcgwmB340
Cla019962	Cucumber (Chinese Long) v2	cuwmB068
Cla019962	Cucurbita pepo (Zucchini)	cpewmB113
Cla019962	Bottle gourd (USVL1VR-Ls)	lsiwmB035
Cla019962	Bottle gourd (USVL1VR-Ls)	lsiwmB409
Cla019962	Cucumber (Gy14) v2	cgybwmB068
Cla019962	Melon (DHL92) v3.6.1	medwmB275
Cla019962	Silver-seed gourd	carwmB0071
Cla019962	Silver-seed gourd	carwmB0563
Cla019962	Cucumber (Chinese Long) v3	cucwmB077
Cla019962	Watermelon (97103) v2	wmwmbB344
Cla019962	Watermelon (97103) v1	wmwmB091
Cla019962	Watermelon (97103) v1	wmwmB161
Cla019962	Cucurbita maxima (Rimu)	cmawmB348
Cla019962	Cucurbita maxima (Rimu)	cmawmB764
Cla019962	Cucurbita maxima (Rimu)	cmawmB873
Cla019962	Cucurbita moschata (Rifu)	cmowmB344
Cla019962	Cucurbita moschata (Rifu)	cmowmB757