Cla016489 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016489
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr11 : 21860795 .. 21861043 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCCGGCCACCACCACCACCACCTCTGGAATACTCCGATACCGTATCTCTTCGGCGGAATAGCATTAACTCTGCTTCTCATCCTCACCGCATTGATTTTACTCGCTTGTTCTTACCGGAAACGGTCTTCCGACGAAGAACACCAGAAGATGAAGATCGATACGCCTGCAGCAAAAACGGCCGCCGTCATCATGGCCGGAAATCACACTCCGACGTTCCTGGCTACCGTTACTATGGCCGCTTAA

mRNA sequence

ATGAATTCCGGCCACCACCACCACCACCTCTGGAATACTCCGATACCGTATCTCTTCGGCGGAATAGCATTAACTCTGCTTCTCATCCTCACCGCATTGATTTTACTCGCTTGTTCTTACCGGAAACGGTCTTCCGACGAAGAACACCAGAAGATGAAGATCGATACGCCTGCAGCAAAAACGGCCGCCGTCATCATGGCCGGAAATCACACTCCGACGTTCCTGGCTACCGTTACTATGGCCGCTTAA

Coding sequence (CDS)

ATGAATTCCGGCCACCACCACCACCACCTCTGGAATACTCCGATACCGTATCTCTTCGGCGGAATAGCATTAACTCTGCTTCTCATCCTCACCGCATTGATTTTACTCGCTTGTTCTTACCGGAAACGGTCTTCCGACGAAGAACACCAGAAGATGAAGATCGATACGCCTGCAGCAAAAACGGCCGCCGTCATCATGGCCGGAAATCACACTCCGACGTTCCTGGCTACCGTTACTATGGCCGCTTAA

Protein sequence

MNSGHHHHHLWNTPIPYLFGGIALTLLLILTALILLACSYRKRSSDEEHQKMKIDTPAAKTAAVIMAGNHTPTFLATVTMAA

Homology

[Close]

BLAST of Cla016489 vs. Swiss-Prot
Match: GDU5_ARATH (Protein GLUTAMINE DUMPER 5 OS=Arabidopsis thaliana GN=GDU5 PE=2 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-10
Identity = 39/78 (50.00%), Postives = 46/78 (58.97%), Query Frame = 1


Query: 11  WNTPIPYLFGGIALTLLLILTALILLACSY---RKRSSDEEHQKMKIDTPAAKT----AA 70
           W TP+PYLFGG+A  L LI  AL+LLACSY    +++ DEE Q    +   AK       
Sbjct: 28  WRTPVPYLFGGLAAMLGLIAFALLLLACSYWRLSRQTEDEEKQTESGEKVVAKAFEEKIL 87

Query: 71  VIMAGNHTPTFLATVTMA 82
           VIMAG + PTFLAT   A
Sbjct: 88  VIMAGQNNPTFLATPVAA 105

[Close]

BLAST of Cla016489 vs. Swiss-Prot
Match: GDU3_ARATH (Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana GN=GDU3 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-09
Identity = 39/88 (44.32%), Postives = 46/88 (52.27%), Query Frame = 1


Query: 8   HHLWNTPIPYLFGGIALTLLLILTALILLACSY------------RKRSSDEEHQKMKID 67
           H  W++P+PYLFGG+A  L LI  AL++LACSY            + R  D E   +K D
Sbjct: 25  HSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSGYLDGEENQSRERDLEVGDVKPD 84

Query: 68  TPAAKTAA------VIMAGNHTPTFLAT 78
             A K  A      VIMAGN  PT+LAT
Sbjct: 85  KTAVKPVALPEKFLVIMAGNVKPTYLAT 112

[Close]

BLAST of Cla016489 vs. Swiss-Prot
Match: GDU2_ARATH (Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana GN=GDU2 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.8e-09
Identity = 36/83 (43.37%), Postives = 43/83 (51.81%), Query Frame = 1


Query: 8   HHLWNTPIPYLFGGIALTLLLILTALILLACSYRKRSSDEEH-----QKMKIDTPAAKTA 67
           H  W++P+PYLFGG+A  L LI  AL++LACSY + S   E         K D    KT 
Sbjct: 25  HSPWHSPVPYLFGGLAAMLALICVALLILACSYWRLSGSAERDLEAGDDAKPDNDTNKTK 84

Query: 68  --------AVIMAGNHTPTFLAT 78
                    VIMAG+  PT+LAT
Sbjct: 85  HTEMPEKFLVIMAGDVRPTYLAT 107

[Close]

BLAST of Cla016489 vs. Swiss-Prot
Match: GDU1_ARATH (Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana GN=GDU1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-08
Identity = 36/83 (43.37%), Postives = 43/83 (51.81%), Query Frame = 1


Query: 11  WNTPIPYLFGGIALTLLLILTALILLACSYRKRSSDEEHQKMKID--------TPAAKTA 70
           W++P+PYLFGG+A  L LI  AL++LACSY + SS  E     +D          AA  A
Sbjct: 30  WHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSSSGEEDGQNVDEEKESRSGDKAANGA 89

Query: 71  -----AVIMAGNHTPTFLATVTM 81
                 VIMAG   P +LAT  M
Sbjct: 90  YEEKFLVIMAGEDLPRYLATPAM 112

[Close]

BLAST of Cla016489 vs. Swiss-Prot
Match: GDU4_ARATH (Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana GN=GDU4 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-08
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 1


Query: 11  WNTPIPYLFGGIALTLLLILTALILLACSYRKRSSD--------EEHQKMKIDTPAAKTA 70
           W++P+PYLFGG+A  L LI  AL++LACSY + S+         +E ++ +    AA  A
Sbjct: 33  WHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSTSGDDSGERVDEEKESRSGVKAASAA 92

Query: 71  A-----VIMAGNHTPTFLAT 78
                 VIMAG+  P FLAT
Sbjct: 93  CEEKVLVIMAGDDLPRFLAT 112

[Close]

BLAST of Cla016489 vs. TrEMBL
Match: A0A0A0KW00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G119770 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.4e-11
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 9  HLWNTPIPYLFGGIALTLLLILTALILLACSYRKRSSDEEHQKMKIDTPAAKTAA----- 68
          HLW +PIPYLFGG++LTLLLI  ALI++ACS+RKR +  +      D PAA ++      
Sbjct: 19 HLWKSPIPYLFGGLSLTLLLIAAALIIIACSFRKRFTGGQK-----DPPAATSSTVNLLM 78

Query: 69 -----VIMAGNHTPTFLA 77
               VIMAGN  PTFLA
Sbjct: 79 EPKFFVIMAGNDMPTFLA 91

[Close]

BLAST of Cla016489 vs. TrEMBL
Match: M5WW82_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025614mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.6e-11
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 8  HHLWNTPIPYLFGGIALTLLLILTALILLACSYRKRSSDEEHQKMKIDTP-------AAK 67
          HHLW +P+PYLFG + L L++I  AL++L CSYRK SS E+ ++ K   P         K
Sbjct: 18 HHLWKSPLPYLFGSLGLMLVVISVALVILFCSYRKPSSSEDEEEEKPAKPLNAVLDDERK 77

Query: 68 TAAVIMAGNHTPTFLAT 78
           A VIMAG   PT LAT
Sbjct: 78 IAIVIMAGEDKPTHLAT 94

[Close]

BLAST of Cla016489 vs. TrEMBL
Match: A0A059AE53_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01438 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.9e-11
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1


Query: 9  HLWNTPIPYLFGGIALTLLLILTALILLACSYRK------RSSDEEHQK-MKIDTPAAKT 68
          H+W++PIPYLFGG+ALTL+LI TALI+L CSY+K      R +DE+  K + I   A   
Sbjct: 11 HIWSSPIPYLFGGLALTLILIFTALIILVCSYQKHTSGELREADEKLPKAVIIPLDAEPK 70

Query: 69 AAVIMAGNHTPTFLA 77
            VIMAG+  PT++A
Sbjct: 71 IVVIMAGDDMPTYIA 85

[Close]

BLAST of Cla016489 vs. TrEMBL
Match: A0A0B2Q391_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_029720 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-10
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 1


Query: 9   HLWNTPIPYLFGGIALTLLLILTALILLACSYRKRSSDEEHQKMKIDTPAAKTAA----- 68
           ++W +PIPYLFGG+A+ L +I  AL++L CSYRKR S       ++D    K+ A     
Sbjct: 19  NIWKSPIPYLFGGLAVMLAIISMALVILVCSYRKRDSQSSSSSSEVDQEEIKSQAMSKNL 78

Query: 69  ---------VIMAGNHTPTFLA 77
                    VIMAGNH PT+LA
Sbjct: 79  ETNSEPEVLVIMAGNHNPTYLA 100

[Close]

BLAST of Cla016489 vs. TrEMBL
Match: C6THG3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G254800 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-10
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 1


Query: 9   HLWNTPIPYLFGGIALTLLLILTALILLACSYRKRSSDEEHQKMKIDTPAAKTAA----- 68
           ++W +PIPYLFGG+A+ L +I  AL++L CSYRKR S       ++D    K+ A     
Sbjct: 19  NIWKSPIPYLFGGLAVMLAIISMALVILVCSYRKRDSQSSSSSSEVDQEEIKSQAMSKNL 78

Query: 69  ---------VIMAGNHTPTFLA 77
                    VIMAGNH PT+LA
Sbjct: 79  ETNSEPEVLVIMAGNHNPTYLA 100

[Close]

BLAST of Cla016489 vs. NCBI nr
Match: gi|694396942|ref|XP_009373736.1| (PREDICTED: protein GLUTAMINE DUMPER 2-like [Pyrus x bretschneideri])

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-12
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 8  HHLWNTPIPYLFGGIALTLLLILTALILLACSYRKRSSDEEHQKM-----KIDTPAAKTA 67
          HHLW +P+PYLFGG+ L LLLI  ALI+LACSYRK SS E+ +K       +     + A
Sbjct: 16 HHLWRSPLPYLFGGLGLMLLLISVALIILACSYRKPSSSEDEEKQAKTASTVLDDERRIA 75

Query: 68 AVIMAGNHTPTFLAT 78
           VIMAG+  PT LAT
Sbjct: 76 IVIMAGDDKPTHLAT 90

[Close]

BLAST of Cla016489 vs. NCBI nr
Match: gi|658035951|ref|XP_008353514.1| (PREDICTED: protein GLUTAMINE DUMPER 2-like [Malus domestica])

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 8  HHLWNTPIPYLFGGIALTLLLILTALILLACSYRKRSSDEEHQKMKIDTPAA-------K 67
          HHLW +P+PYLFGG+ L LLLI  ALI+LACSY K SS E+ +K     PA+       +
Sbjct: 16 HHLWRSPLPYLFGGLGLMLLLISVALIILACSYLKPSSSEDEEKQA--KPASTVLDDERR 75

Query: 68 TAAVIMAGNHTPTFLAT 78
           A V+MAG+  PT LAT
Sbjct: 76 IAIVLMAGDDKPTHLAT 90

[Close]

BLAST of Cla016489 vs. NCBI nr
Match: gi|700198590|gb|KGN53748.1| (hypothetical protein Csa_4G119770 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 6.4e-11
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 9  HLWNTPIPYLFGGIALTLLLILTALILLACSYRKRSSDEEHQKMKIDTPAAKTAA----- 68
          HLW +PIPYLFGG++LTLLLI  ALI++ACS+RKR +  +      D PAA ++      
Sbjct: 19 HLWKSPIPYLFGGLSLTLLLIAAALIIIACSFRKRFTGGQK-----DPPAATSSTVNLLM 78

Query: 69 -----VIMAGNHTPTFLA 77
               VIMAGN  PTFLA
Sbjct: 79 EPKFFVIMAGNDMPTFLA 91

[Close]

BLAST of Cla016489 vs. NCBI nr
Match: gi|595957710|ref|XP_007216730.1| (hypothetical protein PRUPE_ppa025614mg [Prunus persica])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 8  HHLWNTPIPYLFGGIALTLLLILTALILLACSYRKRSSDEEHQKMKIDTP-------AAK 67
          HHLW +P+PYLFG + L L++I  AL++L CSYRK SS E+ ++ K   P         K
Sbjct: 18 HHLWKSPLPYLFGSLGLMLVVISVALVILFCSYRKPSSSEDEEEEKPAKPLNAVLDDERK 77

Query: 68 TAAVIMAGNHTPTFLAT 78
           A VIMAG   PT LAT
Sbjct: 78 IAIVIMAGEDKPTHLAT 94

[Close]

BLAST of Cla016489 vs. NCBI nr
Match: gi|702486054|ref|XP_010034416.1| (PREDICTED: protein GLUTAMINE DUMPER 6-like [Eucalyptus grandis])

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-10
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1


Query: 9  HLWNTPIPYLFGGIALTLLLILTALILLACSYRK------RSSDEEHQK-MKIDTPAAKT 68
          H+W++PIPYLFGG+ALTL+LI TALI+L CSY+K      R +DE+  K + I   A   
Sbjct: 11 HIWSSPIPYLFGGLALTLILIFTALIILVCSYQKHTSGELREADEKLPKAVIIPLDAEPK 70

Query: 69 AAVIMAGNHTPTFLA 77
            VIMAG+  PT++A
Sbjct: 71 IVVIMAGDDMPTYIA 85

The following BLAST results are available for this feature:

BLAST of Cla016489 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GDU5_ARATH	1.1e-10	50.00	Protein GLUTAMINE DUMPER 5 OS=Arabidopsis thaliana GN=GDU5 PE=2 SV=2	[more]
GDU3_ARATH	2.1e-09	44.32	Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana GN=GDU3 PE=2 SV=1	[more]
GDU2_ARATH	7.8e-09	43.37	Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana GN=GDU2 PE=2 SV=1	[more]
GDU1_ARATH	3.0e-08	43.37	Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana GN=GDU1 PE=1 SV=1	[more]
GDU4_ARATH	3.9e-08	42.50	Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana GN=GDU4 PE=2 SV=1	[more]

BLAST of Cla016489 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW00_CUCSA	4.4e-11	52.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G119770 PE=4 SV=1	[more]
M5WW82_PRUPE	7.6e-11	49.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025614mg PE=4 SV=1	[more]
A0A059AE53_EUCGR	9.9e-11	52.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01438 PE=4 SV=1	[more]
A0A0B2Q391_GLYSO	1.7e-10	43.90	Uncharacterized protein OS=Glycine soja GN=glysoja_029720 PE=4 SV=1	[more]
C6THG3_SOYBN	1.7e-10	43.90	Uncharacterized protein OS=Glycine max GN=GLYMA_08G254800 PE=2 SV=1	[more]

BLAST of Cla016489 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|694396942\|ref\|XP_009373736.1\|	2.0e-12	54.67	PREDICTED: protein GLUTAMINE DUMPER 2-like [Pyrus x bretschneideri]	[more]
gi\|658035951\|ref\|XP_008353514.1\|	1.7e-11	53.25	PREDICTED: protein GLUTAMINE DUMPER 2-like [Malus domestica]	[more]
gi\|700198590\|gb\|KGN53748.1\|	6.4e-11	52.56	hypothetical protein Csa_4G119770 [Cucumis sativus]	[more]
gi\|595957710\|ref\|XP_007216730.1\|	1.1e-10	49.35	hypothetical protein PRUPE_ppa025614mg [Prunus persica]	[more]
gi\|702486054\|ref\|XP_010034416.1\|	1.4e-10	52.00	PREDICTED: protein GLUTAMINE DUMPER 6-like [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU07774	watermelon EST collection version 2.0	transcribed_cluster
WMU55970	watermelon EST collection version 2.0	transcribed_cluster
WMU62579	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016489	Cla016489.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU62579	WMU62579	transcribed_cluster
WMU07774	WMU07774	transcribed_cluster
WMU55970	WMU55970	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33228	FAMILY NOT NAMED	coord: 1..77 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla016489	Cla97C11G211910	Watermelon (97103) v2	wmwmbB361
Cla016489	MELO3C022064	Melon (DHL92) v3.5.1	mewmB038
Cla016489	ClCG11G005090	Watermelon (Charleston Gray)	wcgwmB107
Cla016489	CmaCh15G002060	Cucurbita maxima (Rimu)	cmawmB284
Cla016489	CmaCh04G028300	Cucurbita maxima (Rimu)	cmawmB736
Cla016489	CmoCh15G002190	Cucurbita moschata (Rifu)	cmowmB275
Cla016489	CmoCh04G029580	Cucurbita moschata (Rifu)	cmowmB730
Cla016489	Lsi03G002000	Bottle gourd (USVL1VR-Ls)	lsiwmB278
Cla016489	Cp4.1LG01g22170	Cucurbita pepo (Zucchini)	cpewmB462
Cla016489	Cp4.1LG13g07840	Cucurbita pepo (Zucchini)	cpewmB195
Cla016489	MELO3C022064.2	Melon (DHL92) v3.6.1	medwmB037
Cla016489	Carg05909	Silver-seed gourd	carwmB0025
Cla016489	Carg02196	Silver-seed gourd	carwmB0260
Cla016489	Bhi06G000243	Wax gourd	wgowmB140

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016489	Cucumber (Gy14) v1	cgywmB447
Cla016489	Wild cucumber (PI 183967)	cpiwmB450
Cla016489	Wild cucumber (PI 183967)	cpiwmB453
Cla016489	Melon (DHL92) v3.5.1	mewmB076
Cla016489	Cucumber (Chinese Long) v2	cuwmB439
Cla016489	Cucumber (Chinese Long) v2	cuwmB437
Cla016489	Cucumber (Gy14) v2	cgybwmB409
Cla016489	Melon (DHL92) v3.6.1	medwmB038
Cla016489	Melon (DHL92) v3.6.1	medwmB073
Cla016489	Cucumber (Chinese Long) v3	cucwmB462
Cla016489	Watermelon (97103) v2	wmwmbB373