Carg02196 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02196
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_007 : 566506 .. 566859 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTCATTAGCCGCCGCTGCCACCCCCGCCGCCATGGAAACCGGCCGTCATCACCTCTGGAACACTCCGATACCATATCTTTTCGGCGGAATAGGCCTAACTCTACTTCTCATCCTCACCTCATTGATTTTACTCACTTGTTCCTGCCGGAAACACTCTTCATCTTCACCTTCTTCATCATCTTCCGAAGAAGAACACCAGAAGACGAAGATCGATACTCCTGCAAAAACGGCCGCCGATCTGCAACCTCAAATCGTCGTCATAATGGCCGGAAATAACACGCCGTCCTTCCTCGCTACCGCTACGCCTTCCGATTCTTCTACTTTTTCTCGATCGAACCAGCAGTTCTGA

mRNA sequence

ATGAGGTCATTAGCCGCCGCTGCCACCCCCGCCGCCATGGAAACCGGCCGTCATCACCTCTGGAACACTCCGATACCATATCTTTTCGGCGGAATAGGCCTAACTCTACTTCTCATCCTCACCTCATTGATTTTACTCACTTGTTCCTGCCGGAAACACTCTTCATCTTCACCTTCTTCATCATCTTCCGAAGAAGAACACCAGAAGACGAAGATCGATACTCCTGCAAAAACGGCCGCCGATCTGCAACCTCAAATCGTCGTCATAATGGCCGGAAATAACACGCCGTCCTTCCTCGCTACCGCTACGCCTTCCGATTCTTCTACTTTTTCTCGATCGAACCAGCAGTTCTGA

Coding sequence (CDS)

ATGAGGTCATTAGCCGCCGCTGCCACCCCCGCCGCCATGGAAACCGGCCGTCATCACCTCTGGAACACTCCGATACCATATCTTTTCGGCGGAATAGGCCTAACTCTACTTCTCATCCTCACCTCATTGATTTTACTCACTTGTTCCTGCCGGAAACACTCTTCATCTTCACCTTCTTCATCATCTTCCGAAGAAGAACACCAGAAGACGAAGATCGATACTCCTGCAAAAACGGCCGCCGATCTGCAACCTCAAATCGTCGTCATAATGGCCGGAAATAACACGCCGTCCTTCCTCGCTACCGCTACGCCTTCCGATTCTTCTACTTTTTCTCGATCGAACCAGCAGTTCTGA

Protein sequence

MRSLAAAATPAAMETGRHHLWNTPIPYLFGGIGLTLLLILTSLILLTCSCRKHSSSSPSSSSSEEEHQKTKIDTPAKTAADLQPQIVVIMAGNNTPSFLATATPSDSSTFSRSNQQF

Homology

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BLAST of Carg02196 vs. NCBI nr
Match: XP_023545008.1 (protein GLUTAMINE DUMPER 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.7 bits (221), Expect = 6.9e-15
Identity = 86/117 (73.50%), Postives = 97/117 (82.91%), Query Frame = 0


Query: 1   MRSLAAAATPAAMETGRHHLWNTPIPYLFGGIXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MRSLAA+A  +AM+TG +H WNT +PYLFG I        XXXXXXXXXXXXXXXXXXXX
Sbjct: 4   MRSLAASA--SAMKTGHYHFWNTSVPYLFGAI------TLXXXXXXXXXXXXXXXXXXXX 63

Query: 61  XXXXXXXXXXXIDTPAKTAADLQPQIVVIMAGNNTPSFLATATPSDSSTFSRSNQQF 118
           XXXXXXXXXXXIDTP+  A D QP+IVVIMAGN+TP+FLATATPSDSS FSRS ++F
Sbjct: 64  XXXXXXXXXXXIDTPSVAADDPQPKIVVIMAGNHTPTFLATATPSDSSNFSRSTERF 112

The following BLAST results are available for this feature:

BLAST of Carg02196 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545008.1	6.9e-15	73.50	protein GLUTAMINE DUMPER 6-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg02196 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg02196 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg02196 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02196-RA	Carg02196-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..77
None	No IPR available	PANTHER	PTHR33228	FAMILY NOT NAMED	coord: 6..113

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02196	Cla016489	Watermelon (97103) v1	carwmB0260
Carg02196	ClCG11G005090	Watermelon (Charleston Gray)	carwcgB0255
Carg02196	CmaCh04G028300	Cucurbita maxima (Rimu)	carcmaB0374
Carg02196	CmaCh15G002060	Cucurbita maxima (Rimu)	carcmaB0362
Carg02196	CmoCh04G029580	Cucurbita moschata (Rifu)	carcmoB0370
Carg02196	CmoCh15G002190	Cucurbita moschata (Rifu)	carcmoB0362
Carg02196	Lsi03G002000	Bottle gourd (USVL1VR-Ls)	carlsiB236
Carg02196	Cp4.1LG01g22170	Cucurbita pepo (Zucchini)	carcpeB0374
Carg02196	Cp4.1LG13g07840	Cucurbita pepo (Zucchini)	carcpeB0366
Carg02196	Cla97C11G211910	Watermelon (97103) v2	carwmbB0269

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02196	Carg05909	Silver-seed gourd	carcarB020

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02196	Cucumber (Gy14) v2	carcgybB0280
Carg02196	Cucumber (Gy14) v1	carcgyB0316
Carg02196	Cucurbita maxima (Rimu)	carcmaB0365
Carg02196	Wild cucumber (PI 183967)	carcpiB0297
Carg02196	Cucumber (Chinese Long) v2	carcuB0293
Carg02196	Cucumber (Chinese Long) v3	carcucB0296
Carg02196	Melon (DHL92) v3.5.1	carmeB0260
Carg02196	Melon (DHL92) v3.6.1	carmedB0270
Carg02196	Watermelon (Charleston Gray)	carwcgB0254
Carg02196	Watermelon (97103) v2	carwmbB0274
Carg02196	Wax gourd	carwgoB0339
Carg02196	Wax gourd	carwgoB0353