Cla016077 (gene) Watermelon (97103) v1

NameCla016077
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPumilio-family RNA binding protein (AHRD V1 *-** A8N273_COPC7); contains Interpro domain(s) IPR011989 Armadillo-like helical
LocationChr2 : 7199773 .. 7202954 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCCCCACGTCCTAACTTTGGCTAAAGACTTCCAAGGTGGCCATCAAGTGCTACGGAGCTGCTTCTACAATCTTTCTCCACCACCCAATGAGGTATTTATTTATCCTTAAGTGAAGCTTAATCAAGTAAAATTATTGAAAGTAAGAAATATAACGACTGTTTATTGCATATATGACATGCAGTTGATCTTGCTTAGAATAGCACAAAATTGCTTTGAGCTGGCAAGAAATCAAGCTGGTTGCTGTATACTCCAAGAGTGCATTGAATATTCCAATGATAAATTAAGACAACTTCGAGAAGTCCTCATATCCCCGTTGATACAAGATGTAGATAATCTTTCAATACATCCTTACGGGTAATTGCTTTTTATTATCTTATATATGCATATATTATTACTCTTCTAGTTAGTTGTTTATACATATATTAATGGTTAATTAATTACAGGAATTATGTAATTCAATATATGATTCAATTGGATGGAGCAAACATAGGATGGAGGATAATCAATGAACTTAAAAACAAATTTGTCGCACTTTCTATGGACAAGTTTGGAAGCAATGTGGTGGAAAAATGTCTATCTTGTTGTGAAGGTGGCTTTGACTATATTATCTATGAAATTTTAGAGAATAACAATGAAAATCAACTCCTTCAAATTTGTACAAATCAATATGGCAATTATGTTGTCCAGACAGCCATGTCGGTGGCTAAGGTTTGTTTATTTCCATCATTAATGTTTTCATTTTCTCGAAGCATATAATTATCATGTTCATTTAGCAAGTTATTATATACTATTTTTCTAAATGTAATAACATGCCTATATTATTTATCAAGCTGGGAAATGTCCATTAATAGAATGAGATCTTGTAGCATATCGTGTCGTCGGGATATTTAAAGGATCATTTTAGTCTCTAATAACATTTTTTTTTTGATAAAATTGCAGGGAAATGCTCATAGGTTACTTGAAAGAACCATTAAGAGCCATTGGTTTGTTCTTCAATTCCATCCATATGGAAAAAATGTGATTGCATCGGCCAAACGTCATAAAAAGAAGTCCAAATTACAAGAGTTTTAAAGTTGGGTGTATTATATATATATCTTCAAGGACATGTTATTATATATCATTTGTTTCATGTTATATTTGAAGGAATATGCAGCAAAAATAGCTTATCAGGAACATGTTATTTGCACAAAAGTTGCTTTAATTTGTTGGTAACCATTTGTTTTCATAAATTAGTTCTTTGTATTCCTTTATAATTAGTTATTGTTATATATATATATATATATACTAATTCTAGTATCCATCCTCTTTTTTAACGAAGCCACTTCTAATTTTAAAAAGGAGTAAACAAGAAAAAAAACAAATATAAAATCAATAAGGGTAGGTATGGTGACCTAAAAAATAGAAAACAAAGATACTCACGAAAAAAGTAATGTCTAATAAAACTAAAACTTTTGAAATTTAAAAACTAATGTCCCATTTGATAATCAATTTGAATTTTATTAGTTTCTAGTTTTGAAAATTAAAATTATTAAATAGCGAAAATCAAAACATAATAATTTATTAGATAGTGAAATAAATTAAGGAAGTTGGTAATAAAAGTTTGTTGAGAGAAAGGTTTTTAGGTTGAAGAGAATGTGCTCAGAATTCAAGTATATGGGTGATGAAGTGGATGAAGAAAATGGCGAAGAAGCAGAGAATGTATCATTATCTTTATCTATTTACAGTCATCATTAAGAAATTGGATGAGAATTCAAACGTAGTTTGTCTCACATGTTTCATTAGCCACCAACAATCGGTTGTTGTTGGCCGCTATATATATATATATATATATATATATAGCCAAACCTCAACATTGGTCGTCACCTCCCTTCGCCGTCGATTCAATATGTGGGCTTGGGTCAGTTGCCGTTACCACTATATCGTCGACATCAATTTAATCGACTTTCAAAGGAGATCAATTTAATTTGGTTTTAAGAAATTAATAATCGCTTAAGTTTGGATGAGAAAAGATTATTGTTGTAAGATAATAATCCGAAAAATAGTTTCTAATTAAACTTAAACATATCATTGATACAATATTCCATAGAACCTTTGCATGATTGAAGTAATTAAGAAAATCAAAACTTTAGAATGATTTTGTCTTTTGAATGTCAATTTTTAGTTTACCTTTATTTTCTTTGTTCAACTCCAAAATCTATCTTTTGTTATGTGTAAGATGATAATATGCTTATTGCTAGCAAATCTAGAGAAGATTTGAAGAAGGTGAAGCTAGTTGTAAAAAATGAATTTGATATGAAGACTCTAGGTGAATCGAAGAGGATCTTAGTATTGATATCTACAGAAAAAGAAAGAAAAATAATATTCGTAGCCGTCAGTGTACCTACTGTCATAAAATTCTAGAGAGATTTGACTTGGAAGAGCTAATTAAATAAATTATGGTTTACATTTATGAGTCCTAATTAAATTAGTATCTTTCCTTTGTTAGTTATGTTGGTGTCGCTGTATATTTATTCTTCCATGTAAAAATATGTTGATTACATCAATTATTCAATAAAATACATAAAACAACATGCTACTAGAGTTGGATTCTTGTCTTATTCAACTTTAGGTGTCGCCGCTCTATTTGATAGGCCTTTGTCGATCTATTGTCAACTGTGGCAAATCCACGCAGATTTGTCCATTAACACAGTCCCGTCAACGGAGCCAGATCTCCTTAGTCCTGTAAACCTCAAATTTTTCGTGAACAACATTATCGACCTTAGATCCACCACGCACAACTTCATTGACCACAAATCTACCTCCCACATTTGTCATGTAACCCTTTGCTGCCCAAGTTTCTGTCAACGCCTTCCAAGTTTGTTCGATCCCGTTTCACCCAATCCACACCATCATTGTCTAGTGCGTTTTCCGTTTAAGGGTTCCAGATCTACTACGAATACGCTTCAGATTTGTCGTTGTCCACCTCTGTCCTGTCAAGCATCCATCATTAGTCCCATCTCTCGACCTACTTTCGCGCACTTCTCCCAACATGTCGCTCGTGTAGATTTGACCGCCACCGTTCTGCTCGTGAATCCACCATCATGTAGATGCTCTACTTCATCCAGACCTTTTGTTGACGATCAGATTGTACCATCTACTGCCACTACAGACCAGATTCTGCTGTTGATCTCTACTTGA

mRNA sequence

ATGAGTCCCCACGTCCTAACTTTGGCTAAAGACTTCCAAGGTGGCCATCAAGTGCTACGGAGCTGCTTCTACAATCTTTCTCCACCACCCAATGAGTTGATCTTGCTTAGAATAGCACAAAATTGCTTTGAGCTGGCAAGAAATCAAGCTGGTTGCTGTATACTCCAAGAGTGCATTGAATATTCCAATGATAAATTAAGACAACTTCGAGAAGTCCTCATATCCCCGTTGATACAAGATGTAGATAATCTTTCAATACATCCTTACGGGAATTATGTAATTCAATATATGATTCAATTGGATGGAGCAAACATAGGATGGAGGATAATCAATGAACTTAAAAACAAATTTGTCGCACTTTCTATGGACAAGTTTGGAAGCAATGTGGTGGAAAAATGTCTATCTTGTTGTGAAGGTGGCTTTGACTATATTATCTATGAAATTTTAGAGAATAACAATGAAAATCAACTCCTTCAAATTTGTACAAATCAATATGGCAATTATGTTGTCCAGACAGCCATGTCGGTGGCTAAGGGAAATGCTCATAGGTTACTTGAAAGAACCATTAAGAGCCATTGGTTTGTTCTTCAATTCCATCCATATGGAAAAAATGTGATTGCATCGGCCAAACGTGTCGCCGCTCTATTTGATAGGCCTTTGTCGATCTATTGTCAACTGTGGCAAATCCACGCAGATTTGTCCATTAACACAGTCCCGTCAACGGAGCCAGATCTCCTTAGTCCTGTAAACCTCAAATTTTTCGTGAACAACATTATCGACCTTAGATCCACCACGCACAACTTCATTGACCACAAATCTACCTCCCACATTTGTCATGTAACCCTTTGCTGCCCAAGTTTCTGTCAACGCCTTCCAAGTTTGTTCGATCCCGTTTCACCCAATCCACACCATCATTGTCTAGTGCGTTTTCCGTTTAAGGGTTCCAGATCTACTACGAATACGCTTCAGATTTGTCGTTGTCCACCTCTGTCCTGTCAAGCATCCATCATTAGTCCCATCTCTCGACCTACTTTCGCGCACTTCTCCCAACATGTCGCTCGTGTAGATTTGACCGCCACCGTTCTGCTCGTGAATCCACCATCATGTAGATGCTCTACTTCATCCAGACCTTTTGTTGACGATCAGATTGTACCATCTACTGCCACTACAGACCAGATTCTGCTGTTGATCTCTACTTGA

Coding sequence (CDS)

ATGAGTCCCCACGTCCTAACTTTGGCTAAAGACTTCCAAGGTGGCCATCAAGTGCTACGGAGCTGCTTCTACAATCTTTCTCCACCACCCAATGAGTTGATCTTGCTTAGAATAGCACAAAATTGCTTTGAGCTGGCAAGAAATCAAGCTGGTTGCTGTATACTCCAAGAGTGCATTGAATATTCCAATGATAAATTAAGACAACTTCGAGAAGTCCTCATATCCCCGTTGATACAAGATGTAGATAATCTTTCAATACATCCTTACGGGAATTATGTAATTCAATATATGATTCAATTGGATGGAGCAAACATAGGATGGAGGATAATCAATGAACTTAAAAACAAATTTGTCGCACTTTCTATGGACAAGTTTGGAAGCAATGTGGTGGAAAAATGTCTATCTTGTTGTGAAGGTGGCTTTGACTATATTATCTATGAAATTTTAGAGAATAACAATGAAAATCAACTCCTTCAAATTTGTACAAATCAATATGGCAATTATGTTGTCCAGACAGCCATGTCGGTGGCTAAGGGAAATGCTCATAGGTTACTTGAAAGAACCATTAAGAGCCATTGGTTTGTTCTTCAATTCCATCCATATGGAAAAAATGTGATTGCATCGGCCAAACGTGTCGCCGCTCTATTTGATAGGCCTTTGTCGATCTATTGTCAACTGTGGCAAATCCACGCAGATTTGTCCATTAACACAGTCCCGTCAACGGAGCCAGATCTCCTTAGTCCTGTAAACCTCAAATTTTTCGTGAACAACATTATCGACCTTAGATCCACCACGCACAACTTCATTGACCACAAATCTACCTCCCACATTTGTCATGTAACCCTTTGCTGCCCAAGTTTCTGTCAACGCCTTCCAAGTTTGTTCGATCCCGTTTCACCCAATCCACACCATCATTGTCTAGTGCGTTTTCCGTTTAAGGGTTCCAGATCTACTACGAATACGCTTCAGATTTGTCGTTGTCCACCTCTGTCCTGTCAAGCATCCATCATTAGTCCCATCTCTCGACCTACTTTCGCGCACTTCTCCCAACATGTCGCTCGTGTAGATTTGACCGCCACCGTTCTGCTCGTGAATCCACCATCATGTAGATGCTCTACTTCATCCAGACCTTTTGTTGACGATCAGATTGTACCATCTACTGCCACTACAGACCAGATTCTGCTGTTGATCTCTACTTGA

Protein sequence

MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIEYSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVALSMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGNAHRLLERTIKSHWFVLQFHPYGKNVIASAKRVAALFDRPLSIYCQLWQIHADLSINTVPSTEPDLLSPVNLKFFVNNIIDLRSTTHNFIDHKSTSHICHVTLCCPSFCQRLPSLFDPVSPNPHHHCLVRFPFKGSRSTTNTLQICRCPPLSCQASIISPISRPTFAHFSQHVARVDLTATVLLVNPPSCRCSTSSRPFVDDQIVPSTATTDQILLLIST
BLAST of Cla016077 vs. Swiss-Prot
Match: PUM7_ARATH (Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana GN=APUM7 PE=3 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 5.6e-28
Identity = 74/207 (35.75%), Postives = 117/207 (56.52%), Query Frame = 1

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P  L L KD  G H V++ C   LS   N+ I     + C E+A ++ GCC+LQ+CI 
Sbjct: 446 LRPGFLDLIKDLNGNH-VIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIA 505

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
           YS   +RQ RE LI+ + ++   L+  P+GNY +Q++I+L   +    ++ +LK  +V L
Sbjct: 506 YS---MRQQREKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQL 565

Query: 121 SMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGN 180
           SM KF S++VE+CL  C      I+ E++   + +QLLQ   + Y N+V+Q A++  KG 
Sbjct: 566 SMQKFSSHMVERCLMHCPESRPQIVRELVSVPHFDQLLQ---DPYANFVIQAALAATKGP 625

Query: 181 AHRLLERTIKSHWFVLQFHPYGKNVIA 208
            H  L   I+ H  +L+ +PY K + +
Sbjct: 626 LHASLVEVIRPH-SILRNNPYCKRIFS 644

BLAST of Cla016077 vs. Swiss-Prot
Match: PUM12_ARATH (Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-27
Identity = 75/204 (36.76%), Postives = 112/204 (54.90%), Query Frame = 1

Query: 5   VLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIEYSND 64
           ++ L K+  G H V R C   L P   + +      +C ELA ++ GCC+LQ+C+ YS  
Sbjct: 394 IVHLIKNVNGNHVVQR-CLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEG 453

Query: 65  KLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVALSMDK 124
           + +Q    L+S +  +   LS  P+GNYV+QY+ +L      + I+ +L+  +  LSM K
Sbjct: 454 EQKQH---LVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQK 513

Query: 125 FGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGNAHRL 184
             SNVVEKCL   +      I  I E  N  +L Q+  + YGNYV+Q A+  +KGN H L
Sbjct: 514 CSSNVVEKCLKLADDKHRARI--IRELINYGRLDQVMLDPYGNYVIQAALKQSKGNVHAL 573

Query: 185 LERTIKSHWFVLQFHPYGKNVIAS 209
           L   IK +   L+ +PYGK V+++
Sbjct: 574 LVDAIKLNISSLRTNPYGKKVLSA 591

BLAST of Cla016077 vs. Swiss-Prot
Match: PUM8_ARATH (Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana GN=APUM8 PE=3 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 8.1e-27
Identity = 69/207 (33.33%), Postives = 117/207 (56.52%), Query Frame = 1

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P  L L +D  G H V++ C   LS   NE I     + C ++A ++ GCC+LQ+CI 
Sbjct: 311 LRPGFLNLIRDLNGNH-VIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIA 370

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
           YS+   R   E L++ + ++   L+  PYGNY +Q++++L   +    ++ +LK  +V L
Sbjct: 371 YSSGLQR---EKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVEL 430

Query: 121 SMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGN 180
           SM KF S++VE+CL+ C      I+ E++   + + L+Q   + Y N+V+Q A++V KG+
Sbjct: 431 SMQKFSSHMVERCLTHCPESRPQIVRELISVPHFDILIQ---DPYANFVIQAALAVTKGS 490

Query: 181 AHRLLERTIKSHWFVLQFHPYGKNVIA 208
            H  L   I+ H  +L+ +PY K + +
Sbjct: 491 LHATLVEVIRPH-SILRNNPYCKRIFS 509

BLAST of Cla016077 vs. Swiss-Prot
Match: PUF4_YEAST (Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUF4 PE=1 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-24
Identity = 70/214 (32.71%), Postives = 116/214 (54.21%), Query Frame = 1

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P+ + L+KD  G H V++ C   L P   + I   I+ +C ++A ++ GCC+LQ C++
Sbjct: 673 LRPYTVQLSKDLNGNH-VIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLD 732

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGW----RIINELKNK 120
           +      +  + L   L+  VD L++ P+GNYV+QY+I  +     +    +I++ LK +
Sbjct: 733 HGTT---EQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPR 792

Query: 121 FVALSMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSV 180
            + LS+ KFGSNV+EK L       + +I EIL N  E  +  +  + YGNYV+QTA+ +
Sbjct: 793 AIELSIHKFGSNVIEKILKTAIVS-EPMILEILNNGGETGIQSLLNDSYGNYVLQTALDI 852

Query: 181 A-KGNAH---RLLERTIKSHWFVLQFHPYGKNVI 207
           + K N +   RL E         ++  P+GK +I
Sbjct: 853 SHKQNDYLYKRLSEIVAPLLVGPIRNTPHGKRII 881

BLAST of Cla016077 vs. Swiss-Prot
Match: PUM9_ARATH (Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.4e-23
Identity = 71/207 (34.30%), Postives = 108/207 (52.17%), Query Frame = 1

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P  L L KD  G H V++SC   L P  NE +L    + C E+A ++ GCC+LQ CI 
Sbjct: 362 LKPGFLALVKDLNGNH-VIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCIS 421

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
            S   +   RE L++ + ++  +LS  P+GNYV+QY+I    + +  +++ + +  +  L
Sbjct: 422 NS---VGLQRERLVAEISRNSLHLSQDPFGNYVVQYLIDQQVSAV--KLLVQFRMHYAEL 481

Query: 121 SMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGN 180
           +  KF S+V+EKCL         I+ E+L   N   LLQ   + Y NYV+QTA+SV KG 
Sbjct: 482 ATQKFSSHVIEKCLRKYPESRAEIVRELLCVPNFEYLLQ---DPYANYVIQTALSVTKGP 541

Query: 181 AHRLLERTIKSHWFVLQFHPYGKNVIA 208
               L   +   +  L   PY K + +
Sbjct: 542 VRAKLVAKV-YRYGKLHSSPYCKKIFS 558


HSP 2 Score: 47.8 bits (112), Expect = 3.3e-04
Identity = 31/161 (19.25%), Postives = 76/161 (47.20%), Query Frame = 1

Query: 45  LARNQAGCCILQECIEYSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGAN 104
           +A++Q GC +LQ+ +E       + + +L++ +I  V  LS+ P+GNY++Q +  +    
Sbjct: 257 MAKDQIGCRVLQKLVEEGT--FHEAKVILLA-IIDHVVELSMDPFGNYIVQKLFDVSDEE 316

Query: 105 IGWRIINELKN---KFVALSMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQIC 164
               I++ L +   + + + ++ +G+ VV+K +   +         ++++  +   L + 
Sbjct: 317 QRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQ---IALVKSGLKPGFLALV 376

Query: 165 TNQYGNYVVQTAMSVAKGNAHRLLERTIKSHWFVLQFHPYG 203
            +  GN+V+Q+ +     N +  +      +   +  H +G
Sbjct: 377 KDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHG 411


HSP 3 Score: 43.5 bits (101), Expect = 6.3e-03
Identity = 44/175 (25.14%), Postives = 74/175 (42.29%), Query Frame = 1

Query: 62  SNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVALS 121
           SN+ L  + E+  S  +   D +     G  V+Q +++    +    I+  + +  V LS
Sbjct: 240 SNNDLVSMVEIYGSVNLMAKDQI-----GCRVLQKLVEEGTFHEAKVILLAIIDHVVELS 299

Query: 122 MDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGNA 181
           MD FG+ +V+K     +     +I  +L  +N  +L++IC N YG  VVQ  +   K   
Sbjct: 300 MDPFGNYIVQKLFDVSDEEQRTLIVSVL-TSNPRELIRICLNTYGTRVVQKMIETVKTKQ 359

Query: 182 H-RLLERTIKSHWFVLQFHPYGKNVIASAKRVAALFDRPLSI-----YCQLWQIH 231
              L++  +K  +  L     G +VI S  +     D    +     YC    IH
Sbjct: 360 QIALVKSGLKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIH 408

BLAST of Cla016077 vs. TrEMBL
Match: A0A0A0K7S4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071550 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.4e-70
Identity = 133/180 (73.89%), Postives = 154/180 (85.56%), Query Frame = 1

Query: 32  ELILLRIAQNCFELARNQAGCCILQECIEYSNDKLRQLREVLISPLIQDVDNLSIHPYGN 91
           +LI+LR+AQNC ELAR QA CCILQECIEYSN+ LRQL+EVLISPLIQDV +LS HPYGN
Sbjct: 2   QLIILRVAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGN 61

Query: 92  YVIQYMIQLDGANIGWRIINELKNKFVALSMDKFGSNVVEKCLSCCEGGFDYIIYEILEN 151
           YVIQ+MIQLDG NIG RII EL +KFV LSMDK+GSNVVEKCLSCCEG  + II+EILE 
Sbjct: 62  YVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEG 121

Query: 152 NNENQLLQICTNQYGNYVVQTAMSVAKGNAHRLLERTIKSHWFVLQFHPYGKNVIASAKR 211
           N  ++L+QICTNQYGN+VVQT MS+AKG   +LLE+ IKSHW VLQ H YG+NVI+S +R
Sbjct: 122 NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR 181

BLAST of Cla016077 vs. TrEMBL
Match: W9SG11_9ROSA (Pumilio-12-like protein OS=Morus notabilis GN=L484_010253 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.5e-30
Identity = 78/212 (36.79%), Postives = 128/212 (60.38%), Query Frame = 1

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           MSP+ +  +K   G H V++ C  + S   N  +L  +A NC E+A +++GCC+LQ+C+E
Sbjct: 301 MSPYAVPFSKSPNGQH-VIQYCLRHFSDEDNAHLLNEVADNCIEVATDKSGCCVLQQCVE 360

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
            S+     +R+ L+  +I+    LS   YGNYV+QY++ +    +  R+  +L++ F++L
Sbjct: 361 NSHG---HVRDRLVDEIIEMAILLSEDRYGNYVVQYILGMKSPEMTTRLFIQLRSSFMSL 420

Query: 121 SMDKFGSNVVEKCL-SCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKG 180
           S+ K+GSNVVEKCL  C E     II E+L N N   LL   T+ YGNYV+Q+++SV+KG
Sbjct: 421 SLGKYGSNVVEKCLRECDEFQASKIIKELLRNPNAPMLL---TDPYGNYVIQSSLSVSKG 480

Query: 181 NAHRLLERTIKSHWFVLQFHPYGKNVIASAKR 212
              R L   +  +   ++ + YG+ ++A  +R
Sbjct: 481 EVRRELLNLVDRYAQTMRSNLYGRKILAWLER 505

BLAST of Cla016077 vs. TrEMBL
Match: M5XWB3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024026mg PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.2e-30
Identity = 79/208 (37.98%), Postives = 130/208 (62.50%), Query Frame = 1

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           +SP V+ L+K+  G H V+  C  + S   NE +L  +A NC  +A++++GCC+LQ+C+E
Sbjct: 257 LSPGVVALSKNSNGQH-VIEHCLEHFSVQDNEHLLHVVANNCCGIAKDKSGCCVLQKCVE 316

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
           +SN K    RE L++ +      L++  YGNYV+Q+++ L    I   ++ +L+  +++L
Sbjct: 317 HSNGK---NRERLVAAITAKAIVLAVDRYGNYVLQHLLGLRMPQITENLLRQLRGSYMSL 376

Query: 121 SMDKFGSNVVEKC-LSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKG 180
           S +K+GSNVVEKC L   E     II+E+L N N + LL    + +GNYV+QTA+SV+KG
Sbjct: 377 SCNKYGSNVVEKCLLDSGEEQSSQIIFELLTNRNISMLL---LHPFGNYVIQTALSVSKG 436

Query: 181 NAHRLLERTIKSHWFVLQFHPYGKNVIA 208
             H  L   ++ +  V++ + YG+ V+A
Sbjct: 437 VYHDALLNLVQLNSHVMRGNYYGQKVLA 457

BLAST of Cla016077 vs. TrEMBL
Match: A0A022RBH3_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a020918mg PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.2e-30
Identity = 82/206 (39.81%), Postives = 118/206 (57.28%), Query Frame = 1

Query: 6   LTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIEYSNDK 65
           + L +   G H V++ C  +  P  NE+IL  IA NC  +A +++GCC+LQ C+  +   
Sbjct: 337 IELTRSMNGQH-VIQHCLKSFPPQDNEIILQVIADNCLAIASDRSGCCVLQPCVSSAQG- 396

Query: 66  LRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVALSMDKF 125
             + R  +I+ L      LS  PYGNYV+QYM+ +    +  +I+ +L   FV LSMDK+
Sbjct: 397 --ETRNRMIANLTAYALLLSTDPYGNYVVQYMVDMPKVKV--QILTQLSGNFVPLSMDKY 456

Query: 126 GSNVVEKCLSCCEGG-FDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGNAHRL 185
           GSNVVEKCL    G     I+ EI+ + N  QLLQ   + YGNYV Q+A+  +KG A   
Sbjct: 457 GSNVVEKCLKGYNGNQLLSILNEIMNSPNFVQLLQ---DPYGNYVAQSALICSKGAARDA 516

Query: 186 LERTIKSHWFVLQFHPYGKNVIASAK 211
           L   I S++  L  HP+GK V+  A+
Sbjct: 517 LTERIHSNYAFLHSHPHGKRVLERAR 533

BLAST of Cla016077 vs. TrEMBL
Match: A0A067LC35_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16061 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.2e-30
Identity = 79/217 (36.41%), Postives = 136/217 (62.67%), Query Frame = 1

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           +SP  + LAKD  G H V++ C  + S   N+ +L  +A+NCFE+A +++GCC+LQ+C+E
Sbjct: 305 LSPGAVALAKDMNG-HHVIKHCLEHFSDEDNKYLLNMVAENCFEIATDKSGCCVLQQCVE 364

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
            S+    + R+ L++ +I +   L+   YGNYV+Q+++ L  ++I   ++ +L+  + AL
Sbjct: 365 CSHG---EPRDRLVAEIILNALPLAEDRYGNYVVQHILGLRVSHITANLLRQLEGSYAAL 424

Query: 121 SMDKFGSNVVEKCL-SCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKG 180
           + +K+GSNVVEK L    E     II+E+L ++N + LL    + +GNYV+Q+A+SV+KG
Sbjct: 425 ACNKYGSNVVEKFLFETREEQSTQIIWELLRSSNASMLL---VDPFGNYVIQSALSVSKG 484

Query: 181 NAHRLLERTIKSHWFVLQFHPYGKNVIASAKRVAALF 217
              R L   I+ H   ++ + YGK V+A  ++   L+
Sbjct: 485 AVLRALLELIQIHIPRMRSNIYGKKVLAWLQKERMLY 514

BLAST of Cla016077 vs. NCBI nr
Match: gi|700188633|gb|KGN43866.1| (hypothetical protein Csa_7G071550 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 2.0e-70
Identity = 133/180 (73.89%), Postives = 154/180 (85.56%), Query Frame = 1

Query: 32  ELILLRIAQNCFELARNQAGCCILQECIEYSNDKLRQLREVLISPLIQDVDNLSIHPYGN 91
           +LI+LR+AQNC ELAR QA CCILQECIEYSN+ LRQL+EVLISPLIQDV +LS HPYGN
Sbjct: 2   QLIILRVAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGN 61

Query: 92  YVIQYMIQLDGANIGWRIINELKNKFVALSMDKFGSNVVEKCLSCCEGGFDYIIYEILEN 151
           YVIQ+MIQLDG NIG RII EL +KFV LSMDK+GSNVVEKCLSCCEG  + II+EILE 
Sbjct: 62  YVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEG 121

Query: 152 NNENQLLQICTNQYGNYVVQTAMSVAKGNAHRLLERTIKSHWFVLQFHPYGKNVIASAKR 211
           N  ++L+QICTNQYGN+VVQT MS+AKG   +LLE+ IKSHW VLQ H YG+NVI+S +R
Sbjct: 122 NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR 181

BLAST of Cla016077 vs. NCBI nr
Match: gi|659110995|ref|XP_008455521.1| (PREDICTED: putative pumilio homolog 8, chloroplastic [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 3.7e-56
Identity = 106/134 (79.10%), Postives = 120/134 (89.55%), Query Frame = 1

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           MSPHVLTLAKDFQGGH+V++SCF + SP PNELILLR+AQNC ELAR QAGCCILQECIE
Sbjct: 115 MSPHVLTLAKDFQGGHRVIKSCFQSFSPQPNELILLRVAQNCLELAREQAGCCILQECIE 174

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
           YSN+  RQLREVLI+PLI+D  +LS HPYGNYVIQ+MIQLDG NIGWR+I EL +KFV L
Sbjct: 175 YSNNNFRQLREVLITPLIEDAYDLSKHPYGNYVIQFMIQLDGTNIGWRVIKELTHKFVEL 234

Query: 121 SMDKFGSNVVEKCL 135
           SMDK+GSNVVEKC+
Sbjct: 235 SMDKYGSNVVEKCV 248

BLAST of Cla016077 vs. NCBI nr
Match: gi|1009135460|ref|XP_015885003.1| (PREDICTED: putative pumilio homolog 8, chloroplastic isoform X2 [Ziziphus jujuba])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 80/210 (38.10%), Postives = 129/210 (61.43%), Query Frame = 1

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P  + L K    GH V++ C  N S   NE +L  +  NC+ +A +++GCC+LQ+CI+
Sbjct: 350 LGPGAVALTKS-TNGHHVIQYCLKNFSEKDNEYLLNEVVDNCYGIATDKSGCCVLQQCIK 409

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
           YS     +LRE+L++ ++ +   L+   YGNYV+QY++ L    +   I+ +LK  F +L
Sbjct: 410 YSQG---ELRELLVAEIVTNAMLLAEDRYGNYVVQYLLDLRIPQVTASILRQLKGSFSSL 469

Query: 121 SMDKFGSNVVEKCLSCCEGGFD---YIIYEILENNNENQLLQICTNQYGNYVVQTAMSVA 180
           S +K+GSNVVEKCL     G D    II E++ + N + LL    + YGNYV+Q+A+SV+
Sbjct: 470 SCNKYGSNVVEKCLLVT--GPDQSALIIMELITSPNPSMLL---LDPYGNYVIQSALSVS 529

Query: 181 KGNAHRLLERTIKSHWFVLQFHPYGKNVIA 208
           KG  H+ LE  ++ +  +++ + YGK V+A
Sbjct: 530 KGIIHKALENLVQMNSPMMRSNLYGKKVLA 550

BLAST of Cla016077 vs. NCBI nr
Match: gi|1009135460|ref|XP_015885003.1| (PREDICTED: putative pumilio homolog 8, chloroplastic isoform X2 [Ziziphus jujuba])

HSP 1 Score: 50.4 bits (119), Expect = 8.2e-03
Identity = 45/199 (22.61%), Postives = 85/199 (42.71%), Query Frame = 1

Query: 45  LARNQAGCCILQECIEYS-NDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGA 104
           +A++Q GC ILQ  +E S N+++     ++   +I+ V +L I PYGNYV+Q +++L   
Sbjct: 245 MAKDQYGCRILQRTMESSTNEEIN----IIFLEVIEHVGDLMIDPYGNYVVQKLVELCNE 304

Query: 105 NIGWRI---INELKNKFVALSMDKFGSNVVEKCLSCCEGGFDYII---------YEILEN 164
                I   +  +  + V + ++  G+  V+K L     G    I           + ++
Sbjct: 305 EQRTHILLVLTRIDFRLVTICLNMHGTRAVQKLLESLTKGHQISIVMKALGPGAVALTKS 364

Query: 165 NNENQLLQIC------------------------TNQYGNYVVQTAMSVAKGNAHRLLER 207
            N + ++Q C                        T++ G  V+Q  +  ++G    LL  
Sbjct: 365 TNGHHVIQYCLKNFSEKDNEYLLNEVVDNCYGIATDKSGCCVLQQCIKYSQGELRELLVA 424


HSP 2 Score: 141.4 bits (355), Expect = 3.5e-30
Identity = 78/212 (36.79%), Postives = 128/212 (60.38%), Query Frame = 1

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           MSP+ +  +K   G H V++ C  + S   N  +L  +A NC E+A +++GCC+LQ+C+E
Sbjct: 301 MSPYAVPFSKSPNGQH-VIQYCLRHFSDEDNAHLLNEVADNCIEVATDKSGCCVLQQCVE 360

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
            S+     +R+ L+  +I+    LS   YGNYV+QY++ +    +  R+  +L++ F++L
Sbjct: 361 NSHG---HVRDRLVDEIIEMAILLSEDRYGNYVVQYILGMKSPEMTTRLFIQLRSSFMSL 420

Query: 121 SMDKFGSNVVEKCL-SCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKG 180
           S+ K+GSNVVEKCL  C E     II E+L N N   LL   T+ YGNYV+Q+++SV+KG
Sbjct: 421 SLGKYGSNVVEKCLRECDEFQASKIIKELLRNPNAPMLL---TDPYGNYVIQSSLSVSKG 480

Query: 181 NAHRLLERTIKSHWFVLQFHPYGKNVIASAKR 212
              R L   +  +   ++ + YG+ ++A  +R
Sbjct: 481 EVRRELLNLVDRYAQTMRSNLYGRKILAWLER 505

BLAST of Cla016077 vs. NCBI nr
Match: gi|645226973|ref|XP_008220292.1| (PREDICTED: pumilio homolog 12-like [Prunus mume])

HSP 1 Score: 141.4 bits (355), Expect = 3.5e-30
Identity = 79/208 (37.98%), Postives = 130/208 (62.50%), Query Frame = 1

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           +SP V+ L+K+  G H V+  C  + S   NE +L  +A NC  +A++++GCC+LQ+C+E
Sbjct: 269 LSPGVVALSKNSNGQH-VIEHCLEHFSVQDNEHLLHVVANNCCGIAKDKSGCCVLQKCVE 328

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
           +SN K    RE L++ +      L++  YGNYV+Q+++ L    I   ++ +L+  +++L
Sbjct: 329 HSNGK---NREHLVAAITAKAIVLAVDRYGNYVLQHLLGLRMPQITENLLRQLRGSYMSL 388

Query: 121 SMDKFGSNVVEKC-LSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKG 180
           S +K+GSNVVEKC L   E     II+E+L N N + LL    + +GNYV+QTA+SV+KG
Sbjct: 389 SCNKYGSNVVEKCLLDSGEEQSSQIIFELLTNRNVSMLL---LHPFGNYVIQTALSVSKG 448

Query: 181 NAHRLLERTIKSHWFVLQFHPYGKNVIA 208
             H  L   ++ +  V++ + YG+ V+A
Sbjct: 449 VYHDALFNLVQLNSHVMRGNYYGQKVLA 469

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PUM7_ARATH5.6e-2835.75Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana GN=APUM7 PE=3 ... [more]
PUM12_ARATH1.3e-2736.76Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2[more]
PUM8_ARATH8.1e-2733.33Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana GN=APUM8 PE=3 ... [more]
PUF4_YEAST1.7e-2432.71Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae (strain ATCC... [more]
PUM9_ARATH5.4e-2334.30Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K7S4_CUCSA1.4e-7073.89Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071550 PE=4 SV=1[more]
W9SG11_9ROSA2.5e-3036.79Pumilio-12-like protein OS=Morus notabilis GN=L484_010253 PE=4 SV=1[more]
M5XWB3_PRUPE3.2e-3037.98Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024026mg PE=4 S... [more]
A0A022RBH3_ERYGU4.2e-3039.81Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a020918mg... [more]
A0A067LC35_JATCU4.2e-3036.41Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16061 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700188633|gb|KGN43866.1|2.0e-7073.89hypothetical protein Csa_7G071550 [Cucumis sativus][more]
gi|659110995|ref|XP_008455521.1|3.7e-5679.10PREDICTED: putative pumilio homolog 8, chloroplastic [Cucumis melo][more]
gi|1009135460|ref|XP_015885003.1|1.4e-3138.10PREDICTED: putative pumilio homolog 8, chloroplastic isoform X2 [Ziziphus jujuba... [more]
gi|1009135460|ref|XP_015885003.1|8.2e-0322.61PREDICTED: putative pumilio homolog 8, chloroplastic isoform X2 [Ziziphus jujuba... [more]
gi|645226973|ref|XP_008220292.1|3.5e-3037.98PREDICTED: pumilio homolog 12-like [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001313Pumilio_RNA-bd_rpt
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0005488binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0005488 binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU55303watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla016077Cla016077.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU55303WMU55303transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001313Pumilio RNA-binding repeatPFAMPF00806PUFcoord: 155..173
score: 8.4E-5coord: 78..99
score: 1.1E-4coord: 112..137
score: 5.
IPR001313Pumilio RNA-binding repeatSMARTSM00025pum_5coord: 112..147
score: 0.003coord: 37..72
score: 6.0coord: 76..111
score: 1.7coord: 152..186
score:
IPR001313Pumilio RNA-binding repeatPROFILEPS50302PUMcoord: 112..147
score: 8.874coord: 76..111
score: 8.454coord: 37..75
score: 8.804coord: 152..190
score: 8
IPR011989Armadillo-like helicalGENE3DG3DSA:1.25.10.10coord: 2..211
score: 1.8
IPR016024Armadillo-type foldunknownSSF48371ARM repeatcoord: 3..207
score: 2.01
NoneNo IPR availablePANTHERPTHR12537RNA BINDING PROTEIN PUMILIO-RELATEDcoord: 2..205
score: 2.8
NoneNo IPR availablePANTHERPTHR12537:SF13SUPPRESSOR PROTEIN MPT5coord: 2..205
score: 2.8