Cla97C02G033580 (gene) Watermelon (97103) v2

NameCla97C02G033580
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPumilio 12
LocationCla97Chr02 : 7104790 .. 7105865 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCCCCACGTCCTAACTTTGGCTAAAGACTTCCAAGGTGGCCATCAAGTGCTACGGAGCTGCTTCTACAATCTTTCTCCACCACCCAATGAGGTATTTATTTATCCTTAAGTGAAGCTTAATCAAGTAAAATTATTGAAAGTAAGAAATATAACGACTGTTTATTGCATATATGACATGCAGTTGATCTTGCTTAGAATAGCACAAAATTGCTTTGAGCTGGCAAGAAATCAAGCTGGTTGCTGTATACTCCAAGAGTGCATTGAATATTCCAATGATAAATTAAGACAACTTCGAGAAGTCCTCATATCCCCGTTGATACAAGATGTAGATAATCTTTCAATACATCCTTACGGGTAATTGCTTTTTATTATCTTATATATGCATATATTATTACTCTTCTAGTTAGTTGTTTATACATATATTAATGGTTAATTAATTACAGGAATTATGTAATTCAATATATGATTCAATTGGATGGAGCAAACATAGGATGGAGGATAATCAATGAACTTAAAAACAAATTTGTCGCACTTTCTATGGACAAGTTTGGAAGCAATGTGGTGGAAAAATGTCTATCTTGTTGTGAAGGTGGCTTTGACTATATTATCTATGAAATTTTAGAGAATAACAATGAAAATCAACTCCTTCAAATTTGTACAAATCAATATGGCAATTATGTTGTCCAGACAGCCATGTCGGTGGCTAAGGTTTGTTTATTTCCATCATTAATGTTTTCATTTTCTCGAAGCATATAATTATCATGTTCATTTAGCAAGTTATTATATACTATTTTTCTAAATGTAATAACATGCCTATATTATTTATCAAGCTGGGAAATGTCCATTAATAGAATGAGATCTTGTAGCATATCGTGTCGTCGGGATATTTAAAGGATCATTTTAGTCTCTAATAACATTTTTTTTTTGATAAAATTGCAGGGAAATGCTCATAGGTTACTTGAAAGAACCATTAAGAGCCATTGGTTTGTTCTTCAATTCCATCCATATGGAAAAAATGTGATTGCATCGGCCAAACGTCATAAAAAGAAGTCCAAATTACAAGAGTTTTAA

mRNA sequence

ATGAGTCCCCACGTCCTAACTTTGGCTAAAGACTTCCAAGGTGGCCATCAAGTGCTACGGAGCTGCTTCTACAATCTTTCTCCACCACCCAATGAGTTGATCTTGCTTAGAATAGCACAAAATTGCTTTGAGCTGGCAAGAAATCAAGCTGGTTGCTGTATACTCCAAGAGTGCATTGAATATTCCAATGATAAATTAAGACAACTTCGAGAAGTCCTCATATCCCCGTTGATACAAGATGTAGATAATCTTTCAATACATCCTTACGGGAATTATGTAATTCAATATATGATTCAATTGGATGGAGCAAACATAGGATGGAGGATAATCAATGAACTTAAAAACAAATTTGTCGCACTTTCTATGGACAAGTTTGGAAGCAATGTGGTGGAAAAATGTCTATCTTGTTGTGAAGGTGGCTTTGACTATATTATCTATGAAATTTTAGAGAATAACAATGAAAATCAACTCCTTCAAATTTGTACAAATCAATATGGCAATTATGTTGTCCAGACAGCCATGTCGGTGGCTAAGGGAAATGCTCATAGGTTACTTGAAAGAACCATTAAGAGCCATTGGTTTGTTCTTCAATTCCATCCATATGGAAAAAATGTGATTGCATCGGCCAAACGTCATAAAAAGAAGTCCAAATTACAAGAGTTTTAA

Coding sequence (CDS)

ATGAGTCCCCACGTCCTAACTTTGGCTAAAGACTTCCAAGGTGGCCATCAAGTGCTACGGAGCTGCTTCTACAATCTTTCTCCACCACCCAATGAGTTGATCTTGCTTAGAATAGCACAAAATTGCTTTGAGCTGGCAAGAAATCAAGCTGGTTGCTGTATACTCCAAGAGTGCATTGAATATTCCAATGATAAATTAAGACAACTTCGAGAAGTCCTCATATCCCCGTTGATACAAGATGTAGATAATCTTTCAATACATCCTTACGGGAATTATGTAATTCAATATATGATTCAATTGGATGGAGCAAACATAGGATGGAGGATAATCAATGAACTTAAAAACAAATTTGTCGCACTTTCTATGGACAAGTTTGGAAGCAATGTGGTGGAAAAATGTCTATCTTGTTGTGAAGGTGGCTTTGACTATATTATCTATGAAATTTTAGAGAATAACAATGAAAATCAACTCCTTCAAATTTGTACAAATCAATATGGCAATTATGTTGTCCAGACAGCCATGTCGGTGGCTAAGGGAAATGCTCATAGGTTACTTGAAAGAACCATTAAGAGCCATTGGTTTGTTCTTCAATTCCATCCATATGGAAAAAATGTGATTGCATCGGCCAAACGTCATAAAAAGAAGTCCAAATTACAAGAGTTTTAA

Protein sequence

MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIEYSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVALSMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGNAHRLLERTIKSHWFVLQFHPYGKNVIASAKRHKKKSKLQEF
BLAST of Cla97C02G033580 vs. NCBI nr
Match: KGN43866.1 (hypothetical protein Csa_7G071550 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 9.5e-74
Identity = 138/190 (72.63%), Postives = 162/190 (85.26%), Query Frame = 0

Query: 32  ELILLRIAQNCFELARNQAGCCILQECIEYSNDKLRQLREVLISPLIQDVDNLSIHPYGN 91
           +LI+LR+AQNC ELAR QA CCILQECIEYSN+ LRQL+EVLISPLIQDV +LS HPYGN
Sbjct: 2   QLIILRVAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGN 61

Query: 92  YVIQYMIQLDGANIGWRIINELKNKFVALSMDKFGSNVVEKCLSCCEGGFDYIIYEILEN 151
           YVIQ+MIQLDG NIG RII EL +KFV LSMDK+GSNVVEKCLSCCEG  + II+EILE 
Sbjct: 62  YVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEG 121

Query: 152 NNENQLLQICTNQYGNYVVQTAMSVAKGNAHRLLERTIKSHWFVLQFHPYGKNVIASAKR 211
           N  ++L+QICTNQYGN+VVQT MS+AKG   +LLE+ IKSHW VLQ H YG+NVI+S +R
Sbjct: 122 NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR 181

Query: 212 HKKKSKLQEF 222
            KKK+KL ++
Sbjct: 182 DKKKAKLSKY 191

BLAST of Cla97C02G033580 vs. NCBI nr
Match: XP_008455521.1 (PREDICTED: putative pumilio homolog 8, chloroplastic [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 4.8e-57
Identity = 106/134 (79.10%), Postives = 120/134 (89.55%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           MSPHVLTLAKDFQGGH+V++SCF + SP PNELILLR+AQNC ELAR QAGCCILQECIE
Sbjct: 115 MSPHVLTLAKDFQGGHRVIKSCFQSFSPQPNELILLRVAQNCLELAREQAGCCILQECIE 174

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
           YSN+  RQLREVLI+PLI+D  +LS HPYGNYVIQ+MIQLDG NIGWR+I EL +KFV L
Sbjct: 175 YSNNNFRQLREVLITPLIEDAYDLSKHPYGNYVIQFMIQLDGTNIGWRVIKELTHKFVEL 234

Query: 121 SMDKFGSNVVEKCL 135
           SMDK+GSNVVEKC+
Sbjct: 235 SMDKYGSNVVEKCV 248

BLAST of Cla97C02G033580 vs. NCBI nr
Match: XP_022148742.1 (pumilio homolog 12-like [Momordica charantia])

HSP 1 Score: 194.1 bits (492), Expect = 4.9e-46
Identity = 104/218 (47.71%), Postives = 140/218 (64.22%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           +S H + LAK    GH VL +CF NLS   NE+ILL IA N  ELA+++ GCCIL  CI 
Sbjct: 224 ISHHGVALAKSSGPGHDVLINCFRNLSRQDNEMILLEIAHNSLELAKDKNGCCILPFCIL 283

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
           Y+      LR VL++PLIQ+  +LS H Y N+VIQ++I+LD ANIG R+I  L+NKFV L
Sbjct: 284 YAEG---TLRGVLVTPLIQEARHLSTHFYANFVIQFLIELDQANIGARVIQVLRNKFVEL 343

Query: 121 SMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGN 180
            + K GS+VVEKCL C E     II+EI+E  N+   +Q+ TNQY               
Sbjct: 344 CLSKAGSHVVEKCLGCGEDEAAGIIFEIME--NKENWIQVFTNQYXXXXXXXXXXXXXXX 403

Query: 181 AHRLLERTIKSHWFVLQFHPYGKNVIASAKRHKKKSKL 219
           A+ LL R IKS   +L+FHPYG++V+A+A + K++S +
Sbjct: 404 AYNLLVRAIKSQQHILEFHPYGRSVVAAAVKRKRRSSI 436

BLAST of Cla97C02G033580 vs. NCBI nr
Match: OMO63303.1 (hypothetical protein COLO4_32563 [Corchorus olitorius])

HSP 1 Score: 145.6 bits (366), Expect = 2.0e-31
Identity = 79/218 (36.24%), Postives = 131/218 (60.09%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P  + L K+   GH ++  C    S    E ++  I ++C E+A +++GCC+LQ+C+ 
Sbjct: 301 LKPAAVALTKNAH-GHHIIERCLQIFSIEEAEPLVDEIVEHCLEIATDKSGCCVLQQCLA 360

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQL-DGANIGWRIINELKNKFVA 120
            + +   + +E L+  +  +   LS HPYGNYV+Q+++ L +  ++   II +L+  +V 
Sbjct: 361 RTKE---EAKERLLVDITTNAFVLSEHPYGNYVVQFVLGLREVPHVRANIIVQLRGSYVT 420

Query: 121 LSMDKFGSNVVEKCLSCCEG--GFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVA 180
           LSM+K+GSNVVEKCL  CE    F  II EI+   N+++ L++  + +GNYVVQ+A+ V+
Sbjct: 421 LSMNKYGSNVVEKCLKDCEDEEQFAGIITEIM---NDSEFLKVLQDPFGNYVVQSALLVS 480

Query: 181 KGNAHRLLERTIKSHWFVLQFHPYGKNVIASAKRHKKK 216
           KG+ +  L   I+ H+  L  H YGK V+A  K  K +
Sbjct: 481 KGDLYNALIECIQRHYPFLHSHLYGKKVLAKTKGRKNR 511

BLAST of Cla97C02G033580 vs. NCBI nr
Match: OMO73952.1 (hypothetical protein CCACVL1_17055 [Corchorus capsularis])

HSP 1 Score: 145.2 bits (365), Expect = 2.6e-31
Identity = 79/218 (36.24%), Postives = 130/218 (59.63%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P  + L K+   GH ++  C    S    E ++  I ++C E+A +++GCC+LQ+C+ 
Sbjct: 299 LKPAAVALTKNAH-GHHIIERCLQIFSIEEAEPLVDEIVEHCLEIATDKSGCCVLQQCLA 358

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQL-DGANIGWRIINELKNKFVA 120
            S +   + +E L+  +  +   LS HPYGNYV+Q+++ L +  ++   II +L+  +V 
Sbjct: 359 RSKE---EAKERLLVDITANAFVLSEHPYGNYVVQFVLGLREVPHVRANIIVQLRGSYVT 418

Query: 121 LSMDKFGSNVVEKCLSCCEG--GFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVA 180
           LSM+K+GSNVVEKCL  CE    F  II EI+   N+++ L++  + +GNYVVQ+A+ V+
Sbjct: 419 LSMNKYGSNVVEKCLKDCEDEEQFAGIITEIM---NDSEFLKVLQDPFGNYVVQSALLVS 478

Query: 181 KGNAHRLLERTIKSHWFVLQFHPYGKNVIASAKRHKKK 216
           KG+ +      I+ H+  L  H YGK V+A  K  K +
Sbjct: 479 KGDLYNAFIERIQHHYPFLHSHLYGKKVLAKTKGRKNR 509

BLAST of Cla97C02G033580 vs. TrEMBL
Match: tr|A0A0A0K7S4|A0A0A0K7S4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071550 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 6.3e-74
Identity = 138/190 (72.63%), Postives = 162/190 (85.26%), Query Frame = 0

Query: 32  ELILLRIAQNCFELARNQAGCCILQECIEYSNDKLRQLREVLISPLIQDVDNLSIHPYGN 91
           +LI+LR+AQNC ELAR QA CCILQECIEYSN+ LRQL+EVLISPLIQDV +LS HPYGN
Sbjct: 2   QLIILRVAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGN 61

Query: 92  YVIQYMIQLDGANIGWRIINELKNKFVALSMDKFGSNVVEKCLSCCEGGFDYIIYEILEN 151
           YVIQ+MIQLDG NIG RII EL +KFV LSMDK+GSNVVEKCLSCCEG  + II+EILE 
Sbjct: 62  YVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEG 121

Query: 152 NNENQLLQICTNQYGNYVVQTAMSVAKGNAHRLLERTIKSHWFVLQFHPYGKNVIASAKR 211
           N  ++L+QICTNQYGN+VVQT MS+AKG   +LLE+ IKSHW VLQ H YG+NVI+S +R
Sbjct: 122 NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR 181

Query: 212 HKKKSKLQEF 222
            KKK+KL ++
Sbjct: 182 DKKKAKLSKY 191

BLAST of Cla97C02G033580 vs. TrEMBL
Match: tr|A0A1S3C139|A0A1S3C139_CUCME (putative pumilio homolog 8, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495672 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.1e-57
Identity = 106/134 (79.10%), Postives = 120/134 (89.55%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           MSPHVLTLAKDFQGGH+V++SCF + SP PNELILLR+AQNC ELAR QAGCCILQECIE
Sbjct: 115 MSPHVLTLAKDFQGGHRVIKSCFQSFSPQPNELILLRVAQNCLELAREQAGCCILQECIE 174

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
           YSN+  RQLREVLI+PLI+D  +LS HPYGNYVIQ+MIQLDG NIGWR+I EL +KFV L
Sbjct: 175 YSNNNFRQLREVLITPLIEDAYDLSKHPYGNYVIQFMIQLDGTNIGWRVIKELTHKFVEL 234

Query: 121 SMDKFGSNVVEKCL 135
           SMDK+GSNVVEKC+
Sbjct: 235 SMDKYGSNVVEKCV 248

BLAST of Cla97C02G033580 vs. TrEMBL
Match: tr|A0A1R3GYZ0|A0A1R3GYZ0_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_32563 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.3e-31
Identity = 79/218 (36.24%), Postives = 131/218 (60.09%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P  + L K+   GH ++  C    S    E ++  I ++C E+A +++GCC+LQ+C+ 
Sbjct: 301 LKPAAVALTKNAH-GHHIIERCLQIFSIEEAEPLVDEIVEHCLEIATDKSGCCVLQQCLA 360

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQL-DGANIGWRIINELKNKFVA 120
            + +   + +E L+  +  +   LS HPYGNYV+Q+++ L +  ++   II +L+  +V 
Sbjct: 361 RTKE---EAKERLLVDITTNAFVLSEHPYGNYVVQFVLGLREVPHVRANIIVQLRGSYVT 420

Query: 121 LSMDKFGSNVVEKCLSCCEG--GFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVA 180
           LSM+K+GSNVVEKCL  CE    F  II EI+   N+++ L++  + +GNYVVQ+A+ V+
Sbjct: 421 LSMNKYGSNVVEKCLKDCEDEEQFAGIITEIM---NDSEFLKVLQDPFGNYVVQSALLVS 480

Query: 181 KGNAHRLLERTIKSHWFVLQFHPYGKNVIASAKRHKKK 216
           KG+ +  L   I+ H+  L  H YGK V+A  K  K +
Sbjct: 481 KGDLYNALIECIQRHYPFLHSHLYGKKVLAKTKGRKNR 511

BLAST of Cla97C02G033580 vs. TrEMBL
Match: tr|A0A1R3HUF5|A0A1R3HUF5_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17055 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.7e-31
Identity = 79/218 (36.24%), Postives = 130/218 (59.63%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P  + L K+   GH ++  C    S    E ++  I ++C E+A +++GCC+LQ+C+ 
Sbjct: 299 LKPAAVALTKNAH-GHHIIERCLQIFSIEEAEPLVDEIVEHCLEIATDKSGCCVLQQCLA 358

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQL-DGANIGWRIINELKNKFVA 120
            S +   + +E L+  +  +   LS HPYGNYV+Q+++ L +  ++   II +L+  +V 
Sbjct: 359 RSKE---EAKERLLVDITANAFVLSEHPYGNYVVQFVLGLREVPHVRANIIVQLRGSYVT 418

Query: 121 LSMDKFGSNVVEKCLSCCEG--GFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVA 180
           LSM+K+GSNVVEKCL  CE    F  II EI+   N+++ L++  + +GNYVVQ+A+ V+
Sbjct: 419 LSMNKYGSNVVEKCLKDCEDEEQFAGIITEIM---NDSEFLKVLQDPFGNYVVQSALLVS 478

Query: 181 KGNAHRLLERTIKSHWFVLQFHPYGKNVIASAKRHKKK 216
           KG+ +      I+ H+  L  H YGK V+A  K  K +
Sbjct: 479 KGDLYNAFIERIQHHYPFLHSHLYGKKVLAKTKGRKNR 509

BLAST of Cla97C02G033580 vs. TrEMBL
Match: tr|A0A162AE57|A0A162AE57_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012806 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.3e-31
Identity = 80/216 (37.04%), Postives = 134/216 (62.04%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           +SP    LA+D   GH V++ C  + S   N  I+  IA NCFE+A ++ GCC++Q C+E
Sbjct: 283 ISPSAAILARD-TNGHHVIQHCLTHFSNEYNLYIINNIASNCFEVATSKTGCCVMQLCVE 342

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
            S   L   R+VL+S +I    +L+ HP+GNYV+Q+++ L   +I   I+ +L+  F+++
Sbjct: 343 KS---LGVHRQVLVSEIIATAVHLAEHPFGNYVLQHLLGLKEPDITGSIVRQLQGSFLSI 402

Query: 121 SMDKFGSNVVEKCLSCCEGGFDY---IIYEILENNNENQLLQICTNQYGNYVVQTAMSVA 180
           S +K+GSNVVEKCL   E G +    II E++ + N + +L    + +GN+V Q+A+SV 
Sbjct: 403 SCNKYGSNVVEKCL--IESGGEQCTRIIMELVRSPNASMML---LDPFGNFVFQSALSVT 462

Query: 181 KGNAHRLLERTIKSHWFVLQFHPYGKNVIASAKRHK 214
           KG A   L + ++++  V++ + YGK ++A  ++ K
Sbjct: 463 KGYARIALLQLVRANAVVMKSNLYGKKILAWLEKRK 489

BLAST of Cla97C02G033580 vs. Swiss-Prot
Match: sp|Q9C9R6|PUM7_ARATH (Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APUM7 PE=3 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 2.9e-29
Identity = 74/207 (35.75%), Postives = 119/207 (57.49%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P  L L KD  G H V++ C   LS   N+ I     + C E+A ++ GCC+LQ+CI 
Sbjct: 446 LRPGFLDLIKDLNGNH-VIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIA 505

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
           YS   +RQ RE LI+ + ++   L+  P+GNY +Q++I+L   +    ++ +LK  +V L
Sbjct: 506 YS---MRQQREKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQL 565

Query: 121 SMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGN 180
           SM KF S++VE+CL  C      I+ E++   + +QLLQ   + Y N+V+Q A++  KG 
Sbjct: 566 SMQKFSSHMVERCLMHCPESRPQIVRELVSVPHFDQLLQ---DPYANFVIQAALAATKGP 625

Query: 181 AHRLLERTIKSHWFVLQFHPYGKNVIA 208
            H  L   I+ H  +L+ +PY K + +
Sbjct: 626 LHASLVEVIRPH-SILRNNPYCKRIFS 644

BLAST of Cla97C02G033580 vs. Swiss-Prot
Match: sp|Q9LVC3|PUM12_ARATH (Pumilio homolog 12 OS=Arabidopsis thaliana OX=3702 GN=APUM12 PE=2 SV=2)

HSP 1 Score: 129.0 bits (323), Expect = 6.4e-29
Identity = 75/209 (35.89%), Postives = 115/209 (55.02%), Query Frame = 0

Query: 5   VLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIEYSND 64
           ++ L K+  G H V++ C   L P   + +      +C ELA ++ GCC+LQ+C+ YS  
Sbjct: 394 IVHLIKNVNGNH-VVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEG 453

Query: 65  KLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVALSMDK 124
           + +Q    L+S +  +   LS  P+GNYV+QY+ +L      + I+ +L+  +  LSM K
Sbjct: 454 EQKQ---HLVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQK 513

Query: 125 FGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGNAHRL 184
             SNVVEKCL   +      I  I E  N  +L Q+  + YGNYV+Q A+  +KGN H L
Sbjct: 514 CSSNVVEKCLKLADDKHRARI--IRELINYGRLDQVMLDPYGNYVIQAALKQSKGNVHAL 573

Query: 185 LERTIKSHWFVLQFHPYGKNVIASAKRHK 214
           L   IK +   L+ +PYGK V+++    K
Sbjct: 574 LVDAIKLNISSLRTNPYGKKVLSALSSKK 596

BLAST of Cla97C02G033580 vs. Swiss-Prot
Match: sp|Q9LM20|PUM8_ARATH (Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APUM8 PE=3 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 3.2e-28
Identity = 69/207 (33.33%), Postives = 119/207 (57.49%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P  L L +D  G H V++ C   LS   NE I     + C ++A ++ GCC+LQ+CI 
Sbjct: 311 LRPGFLNLIRDLNGNH-VIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIA 370

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
           YS+      RE L++ + ++   L+  PYGNY +Q++++L   +    ++ +LK  +V L
Sbjct: 371 YSSG---LQREKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVEL 430

Query: 121 SMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGN 180
           SM KF S++VE+CL+ C      I+ E++   + + L+Q   + Y N+V+Q A++V KG+
Sbjct: 431 SMQKFSSHMVERCLTHCPESRPQIVRELISVPHFDILIQ---DPYANFVIQAALAVTKGS 490

Query: 181 AHRLLERTIKSHWFVLQFHPYGKNVIA 208
            H  L   I+ H  +L+ +PY K + +
Sbjct: 491 LHATLVEVIRPH-SILRNNPYCKRIFS 509

BLAST of Cla97C02G033580 vs. Swiss-Prot
Match: sp|P25339|PUF4_YEAST (Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PUF4 PE=1 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 6.6e-26
Identity = 70/214 (32.71%), Postives = 118/214 (55.14%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P+ + L+KD  G H V++ C   L P   + I   I+ +C ++A ++ GCC+LQ C++
Sbjct: 673 LRPYTVQLSKDLNGNH-VIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLD 732

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGW----RIINELKNK 120
           +      +  + L   L+  VD L++ P+GNYV+QY+I  +     +    +I++ LK +
Sbjct: 733 HGT---TEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPR 792

Query: 121 FVALSMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSV 180
            + LS+ KFGSNV+EK L       + +I EIL N  E  +  +  + YGNYV+QTA+ +
Sbjct: 793 AIELSIHKFGSNVIEKILKTAIVS-EPMILEILNNGGETGIQSLLNDSYGNYVLQTALDI 852

Query: 181 A-KGNAH---RLLERTIKSHWFVLQFHPYGKNVI 207
           + K N +   RL E         ++  P+GK +I
Sbjct: 853 SHKQNDYLYKRLSEIVAPLLVGPIRNTPHGKRII 881

BLAST of Cla97C02G033580 vs. Swiss-Prot
Match: sp|Q1PFN9|PUM9_ARATH (Pumilio homolog 9 OS=Arabidopsis thaliana OX=3702 GN=APUM9 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-24
Identity = 70/207 (33.82%), Postives = 111/207 (53.62%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P  L L KD  G H V++SC   L P  NE +L    + C E+A ++ GCC+LQ CI 
Sbjct: 362 LKPGFLALVKDLNGNH-VIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCI- 421

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
             ++ +   RE L++ + ++  +LS  P+GNYV+QY+I    + +  +++ + +  +  L
Sbjct: 422 --SNSVGLQRERLVAEISRNSLHLSQDPFGNYVVQYLIDQQVSAV--KLLVQFRMHYAEL 481

Query: 121 SMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGN 180
           +  KF S+V+EKCL         I+ E+L   N   LLQ   + Y NYV+QTA+SV KG 
Sbjct: 482 ATQKFSSHVIEKCLRKYPESRAEIVRELLCVPNFEYLLQ---DPYANYVIQTALSVTKGP 541

Query: 181 AHRLLERTIKSHWFVLQFHPYGKNVIA 208
               L   +   +  L   PY K + +
Sbjct: 542 VRAKLVAKV-YRYGKLHSSPYCKKIFS 558

BLAST of Cla97C02G033580 vs. TAIR10
Match: AT1G78160.1 (pumilio 7)

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-30
Identity = 74/207 (35.75%), Postives = 119/207 (57.49%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P  L L KD  G H V++ C   LS   N+ I     + C E+A ++ GCC+LQ+CI 
Sbjct: 446 LRPGFLDLIKDLNGNH-VIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIA 505

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
           YS   +RQ RE LI+ + ++   L+  P+GNY +Q++I+L   +    ++ +LK  +V L
Sbjct: 506 YS---MRQQREKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQL 565

Query: 121 SMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGN 180
           SM KF S++VE+CL  C      I+ E++   + +QLLQ   + Y N+V+Q A++  KG 
Sbjct: 566 SMQKFSSHMVERCLMHCPESRPQIVRELVSVPHFDQLLQ---DPYANFVIQAALAATKGP 625

Query: 181 AHRLLERTIKSHWFVLQFHPYGKNVIA 208
            H  L   I+ H  +L+ +PY K + +
Sbjct: 626 LHASLVEVIRPH-SILRNNPYCKRIFS 644

BLAST of Cla97C02G033580 vs. TAIR10
Match: AT5G56510.1 (pumilio 12)

HSP 1 Score: 129.0 bits (323), Expect = 3.5e-30
Identity = 75/209 (35.89%), Postives = 115/209 (55.02%), Query Frame = 0

Query: 5   VLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIEYSND 64
           ++ L K+  G H V++ C   L P   + +      +C ELA ++ GCC+LQ+C+ YS  
Sbjct: 394 IVHLIKNVNGNH-VVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEG 453

Query: 65  KLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVALSMDK 124
           + +Q    L+S +  +   LS  P+GNYV+QY+ +L      + I+ +L+  +  LSM K
Sbjct: 454 EQKQ---HLVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQK 513

Query: 125 FGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGNAHRL 184
             SNVVEKCL   +      I  I E  N  +L Q+  + YGNYV+Q A+  +KGN H L
Sbjct: 514 CSSNVVEKCLKLADDKHRARI--IRELINYGRLDQVMLDPYGNYVIQAALKQSKGNVHAL 573

Query: 185 LERTIKSHWFVLQFHPYGKNVIASAKRHK 214
           L   IK +   L+ +PYGK V+++    K
Sbjct: 574 LVDAIKLNISSLRTNPYGKKVLSALSSKK 596

BLAST of Cla97C02G033580 vs. TAIR10
Match: AT1G22240.1 (pumilio 8)

HSP 1 Score: 126.7 bits (317), Expect = 1.8e-29
Identity = 69/207 (33.33%), Postives = 119/207 (57.49%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P  L L +D  G H V++ C   LS   NE I     + C ++A ++ GCC+LQ+CI 
Sbjct: 311 LRPGFLNLIRDLNGNH-VIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIA 370

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
           YS+      RE L++ + ++   L+  PYGNY +Q++++L   +    ++ +LK  +V L
Sbjct: 371 YSSG---LQREKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVEL 430

Query: 121 SMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGN 180
           SM KF S++VE+CL+ C      I+ E++   + + L+Q   + Y N+V+Q A++V KG+
Sbjct: 431 SMQKFSSHMVERCLTHCPESRPQIVRELISVPHFDILIQ---DPYANFVIQAALAVTKGS 490

Query: 181 AHRLLERTIKSHWFVLQFHPYGKNVIA 208
            H  L   I+ H  +L+ +PY K + +
Sbjct: 491 LHATLVEVIRPH-SILRNNPYCKRIFS 509

BLAST of Cla97C02G033580 vs. TAIR10
Match: AT1G35730.1 (pumilio 9)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-25
Identity = 70/207 (33.82%), Postives = 111/207 (53.62%), Query Frame = 0

Query: 1   MSPHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIE 60
           + P  L L KD  G H V++SC   L P  NE +L    + C E+A ++ GCC+LQ CI 
Sbjct: 362 LKPGFLALVKDLNGNH-VIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCI- 421

Query: 61  YSNDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVAL 120
             ++ +   RE L++ + ++  +LS  P+GNYV+QY+I    + +  +++ + +  +  L
Sbjct: 422 --SNSVGLQRERLVAEISRNSLHLSQDPFGNYVVQYLIDQQVSAV--KLLVQFRMHYAEL 481

Query: 121 SMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGN 180
           +  KF S+V+EKCL         I+ E+L   N   LLQ   + Y NYV+QTA+SV KG 
Sbjct: 482 ATQKFSSHVIEKCLRKYPESRAEIVRELLCVPNFEYLLQ---DPYANYVIQTALSVTKGP 541

Query: 181 AHRLLERTIKSHWFVLQFHPYGKNVIA 208
               L   +   +  L   PY K + +
Sbjct: 542 VRAKLVAKV-YRYGKLHSSPYCKKIFS 558

BLAST of Cla97C02G033580 vs. TAIR10
Match: AT4G08840.1 (pumilio 11)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-25
Identity = 68/205 (33.17%), Postives = 109/205 (53.17%), Query Frame = 0

Query: 3   PHVLTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCFELARNQAGCCILQECIEYS 62
           P  L+L ++  G H +L +C    SP  N+ IL    + C E+A  + GCC+LQ C+ YS
Sbjct: 356 PGFLSLFRELNGNHVIL-NCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYS 415

Query: 63  NDKLRQLREVLISPLIQDVDNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVALSM 122
              + +  E L+  + ++   L+  P+GNY++QY+I+      G  ++ EL+  +V L+ 
Sbjct: 416 ---VGEQHEKLVDEISRNSLLLAQDPFGNYLVQYIIEKKVG--GVNVLFELRGNYVKLAT 475

Query: 123 DKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTNQYGNYVVQTAMSVAKGNAH 182
            KFGS+VVEKCL         I+ E++   N   LLQ   + Y NYV+Q A+S  KG   
Sbjct: 476 QKFGSHVVEKCLRYYPESRSQIVNELVSVLNFGYLLQ---DPYANYVIQCALSKTKGFVR 535

Query: 183 RLLERTIKSHWFVLQFHPYGKNVIA 208
             L   ++  +  L+  PY K + +
Sbjct: 536 ASLVEKVR-RYENLKMTPYCKRIFS 550

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN43866.19.5e-7472.63hypothetical protein Csa_7G071550 [Cucumis sativus][more]
XP_008455521.14.8e-5779.10PREDICTED: putative pumilio homolog 8, chloroplastic [Cucumis melo][more]
XP_022148742.14.9e-4647.71pumilio homolog 12-like [Momordica charantia][more]
OMO63303.12.0e-3136.24hypothetical protein COLO4_32563 [Corchorus olitorius][more]
OMO73952.12.6e-3136.24hypothetical protein CCACVL1_17055 [Corchorus capsularis][more]
Match NameE-valueIdentityDescription
tr|A0A0A0K7S4|A0A0A0K7S4_CUCSA6.3e-7472.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071550 PE=4 SV=1[more]
tr|A0A1S3C139|A0A1S3C139_CUCME3.1e-5779.10putative pumilio homolog 8, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10349567... [more]
tr|A0A1R3GYZ0|A0A1R3GYZ0_9ROSI1.3e-3136.24Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_32563 PE=4 SV=1[more]
tr|A0A1R3HUF5|A0A1R3HUF5_COCAP1.7e-3136.24Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17055 PE=4 ... [more]
tr|A0A162AE57|A0A162AE57_DAUCA2.3e-3137.04Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012806 ... [more]
Match NameE-valueIdentityDescription
sp|Q9C9R6|PUM7_ARATH2.9e-2935.75Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APU... [more]
sp|Q9LVC3|PUM12_ARATH6.4e-2935.89Pumilio homolog 12 OS=Arabidopsis thaliana OX=3702 GN=APUM12 PE=2 SV=2[more]
sp|Q9LM20|PUM8_ARATH3.2e-2833.33Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APU... [more]
sp|P25339|PUF4_YEAST6.6e-2632.71Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae (strain ATCC... [more]
sp|Q1PFN9|PUM9_ARATH2.8e-2433.82Pumilio homolog 9 OS=Arabidopsis thaliana OX=3702 GN=APUM9 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT1G78160.11.6e-3035.75pumilio 7[more]
AT5G56510.13.5e-3035.89pumilio 12[more]
AT1G22240.11.8e-2933.33pumilio 8[more]
AT1G35730.11.5e-2533.82pumilio 9[more]
AT4G08840.12.0e-2533.17pumilio 11[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR033133PUM-HD
IPR011989ARM-like
IPR001313Pumilio_RNA-bd_rpt
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0005488 binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G033580.1Cla97C02G033580.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001313Pumilio RNA-binding repeatSMARTSM00025pum_5coord: 112..147
e-value: 0.003
score: 26.8
coord: 76..111
e-value: 1.7
score: 17.6
coord: 37..72
e-value: 6.0
score: 14.5
coord: 152..186
e-value: 1.6
score: 17.7
IPR001313Pumilio RNA-binding repeatPFAMPF00806PUFcoord: 112..137
e-value: 2.6E-5
score: 23.6
coord: 39..68
e-value: 7.0E-4
score: 19.1
coord: 155..173
e-value: 4.0E-5
score: 23.0
coord: 78..99
e-value: 5.1E-5
score: 22.6
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 37..75
score: 8.804
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 76..111
score: 8.454
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 152..190
score: 8.244
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 112..147
score: 8.874
IPR011989Armadillo-like helicalGENE3DG3DSA:1.25.10.10coord: 1..220
e-value: 3.4E-55
score: 189.3
NoneNo IPR availablePANTHERPTHR12537:SF64PUMILIO HOMOLOG 11-RELATEDcoord: 2..209
NoneNo IPR availablePANTHERPTHR12537RNA BINDING PROTEIN PUMILIO-RELATEDcoord: 2..209
IPR033133Pumilio homology domainPROSITEPS50303PUM_HDcoord: 1..213
score: 42.903
IPR016024Armadillo-type foldSUPERFAMILYSSF48371ARM repeatcoord: 3..207

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G033580Cla016077Watermelon (97103) v1wmwmbB317
Cla97C02G033580ClCG02G006590Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G033580Lsi03G005560Bottle gourd (USVL1VR-Ls)lsiwmbB226
The following gene(s) are paralogous to this gene:

None