Cla016072 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016072
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 7137118 .. 7138607 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGGCGCTCTGGATCGCTCTCTCGGACGCTAATCTCCACTGTCCGCTCTTCATCTTCCCGGTTAACTTCATCGGCTCCTCAACTCCGCCCGCCGCCGCTCACTGGTCCTCGCCGCCTGCCGGGCCACCATTTCTCTGCTGCTTCCAGGTTCCCTCCCTCAAAACCCTCTAACATTACTCTGTTGTGTTGCGAAATTGAAAATGATAGCCGTTAGTGTTTTCACTTAGTGCCTAGTTGTTCCGTTACCTTTTTTCGTGGTTGATTCATACTTAACTGGATGGGAATTCTGCTTGACAACGTTTTTGCAGATTTGAAATCTCGAGAAAATTTTGTTGTTTTGTAGTTTAATTGTCTGATAAGAAATGGGAGAGAATTTATCAGAGCAAAGATATATTAGATATTTGGATGGTTCTTGATTATAGATATGTTGTCCTGCTTTCTTGCCGTTACTTGTAGAATGTAGATGAAAAGGAAGTGACCTCTTCTATTCTATTTCCTCCACTATGACCACGGAATATGTTATTGACTCAAACCAGTTGGCATATTGTTAGGGAGAGTGTGTCCTCTATATATCTCAATAATGGTATATGATATTGTCCACTTTAGACAAAATTTTCATAGTTTTGTTTTTGGTTTCACCCAAAATATCTCATACCTATAGTTGTACTCACTTATATACCCATGATTATCTCTTGTCTAGCAATGTAGAACTTCGGTCGTATTTTCACCACATGATTTTTGGATAAGAAGAAATTGGGATCAAATTCTTTGATGTAGAAAGTTATTTTTGGTAAAATTTTAAGTTTGTTACTTGAACTTTTAAGGTTGTGTCGTGCTTAAACTGTTAGTCTTGTATTTGATAGATTGCTAAACTTTAAAAAAAGTCTTATAAATTTTTTTAATTTTGAATTATGTACTTAATAGATCTTTGATCTTCCAATTTTATGCTTAATAGACTCTGAGTTATGAAACCTTTTTTACAAACCTCAATGACTCATTGACACAAAATTCAAAATTTAGAACTTTTTAAACATTATTTATAATTAGACACAACATCATTGAAGTTCCAAAACTTATTAGATTAGATACCACACTTCAAACCTATTAGACAAACCATTATGTTCTTGGCTGTATTCCATATTGACATCTTTCTTTCTTTGTCATATATGATATGCATCTTTCCAATTTATTCCTATGAAGAAAATATAGTTCCCCTATTCTCGAGGTAAAATTAATAATGGGAATTTTTGGGTCATCCGTTTGATAATATAATTTATATGTAATTCTGTGTTTCTTCTTTCGTTTACCGGTTTGTTATTTATTTCATACTCTAGGAGCTTGGGAGAACTGGGATGCGTACAATCATTTTTGCCAATTTACAGCATGACAGCGGCTTCCTGCCTGACATCCCACCTCACTGTTAATGTTAGGGCTTTTTGCGAGCTGTCTCATGGTACCTTCTGCCGTACTTGTCAAGATCGCTAG

mRNA sequence

ATGGCTTGGCGCTCTGGATCGCTCTCTCGGACGCTAATCTCCACTGTCCGCTCTTCATCTTCCCGGTTAACTTCATCGGCTCCTCAACTCCGCCCGCCGCCGCTCACTGGTCCTCGCCGCCTGCCGGGCCACCATTTCTCTGCTGCTTCCAGGAGCTTGGGAGAACTGGGATGCGTACAATCATTTTTGCCAATTTACAGCATGACAGCGGCTTCCTGCCTGACATCCCACCTCACTGTTAATGTTAGGGCTTTTTGCGAGCTGTCTCATGGTACCTTCTGCCGTACTTGTCAAGATCGCTAG

Coding sequence (CDS)

ATGGCTTGGCGCTCTGGATCGCTCTCTCGGACGCTAATCTCCACTGTCCGCTCTTCATCTTCCCGGTTAACTTCATCGGCTCCTCAACTCCGCCCGCCGCCGCTCACTGGTCCTCGCCGCCTGCCGGGCCACCATTTCTCTGCTGCTTCCAGGAGCTTGGGAGAACTGGGATGCGTACAATCATTTTTGCCAATTTACAGCATGACAGCGGCTTCCTGCCTGACATCCCACCTCACTGTTAATGTTAGGGCTTTTTGCGAGCTGTCTCATGGTACCTTCTGCCGTACTTGTCAAGATCGCTAG

Protein sequence

MAWRSGSLSRTLISTVRSSSSRLTSSAPQLRPPPLTGPRRLPGHHFSAASRSLGELGCVQSFLPIYSMTAASCLTSHLTVNVRAFCELSHGTFCRTCQDR

Homology

[Close]

BLAST of Cla016072 vs. TrEMBL
Match: A0A0A0K4J1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071630 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 9.5e-40
Identity = 87/94 (92.55%), Postives = 88/94 (93.62%), Query Frame = 1


Query: 1   MAWRSGSLSRTLISTVRSSSSRLTSSAPQLRPP--PLTGPRRLPGHHFSAASRSLGELGC 60
           MAWRSGSLSRTLIS VRSSSSRL+SSAPQLRPP  PL  PRRLPG HFSAASRSLGELGC
Sbjct: 59  MAWRSGSLSRTLISNVRSSSSRLSSSAPQLRPPQPPLPAPRRLPGRHFSAASRSLGELGC 118

Query: 61  VQSFLPIYSMTAASCLTSHLTVNVRAFCELSHGT 93
           VQSFLPIYSMTAASCLTSHLTVNVRAFCELSHGT
Sbjct: 119 VQSFLPIYSMTAASCLTSHLTVNVRAFCELSHGT 152

[Close]

BLAST of Cla016072 vs. TrEMBL
Match: M5VJ60_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013214mg PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 65/101 (64.36%), Postives = 77/101 (76.24%), Query Frame = 1


Query: 1   MAWRS-GSLSRTLISTVRSSSSRLTSSAPQLRPPPLTGPRRLPGHHFSAASRSLGELGCV 60
           MAWRS GSLSR+L+ST R SS R      +LRPP ++ PRRL      A+ R+LGELGC+
Sbjct: 39  MAWRSAGSLSRSLVSTARVSSLRSAPPLRRLRPPTVSTPRRLA----FASPRNLGELGCI 98

Query: 61  QSFLPIYSMTAASCLTSHLTVNVRAFCELSHGTFCRTCQDR 101
           QS LP++S+TAA+CLTSHL VN R  CELSHGTFCRTCQDR
Sbjct: 99  QSLLPMHSVTAATCLTSHLAVNARGCCELSHGTFCRTCQDR 135

[Close]

BLAST of Cla016072 vs. TrEMBL
Match: A0A0D2NHH7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G234400 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-26
Identity = 65/101 (64.36%), Postives = 74/101 (73.27%), Query Frame = 1


Query: 1   MAWRS-GSLSRTLISTVRSSSSRLTSSAPQLRPPPLTGPRRLPGHHFSAASRSLGELGCV 60
           MAWRS GSLSR++IS  R+ S R     P+LRP   + PR        A SR+LGELGCV
Sbjct: 1   MAWRSAGSLSRSVISAARAPSLRSPPPLPRLRPSVSSAPRLQSRRLSYAPSRNLGELGCV 60

Query: 61  QSFLPIYSMTAASCLTSHLTVNVRAFCELSHGTFCRTCQDR 101
           QSFLP++SM   +CLTSHLTVNVRA CELSHGTFCRTCQDR
Sbjct: 61  QSFLPLHSMVPTACLTSHLTVNVRACCELSHGTFCRTCQDR 101

[Close]

BLAST of Cla016072 vs. TrEMBL
Match: A0A0A0LBV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199040 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.6e-25
Identity = 67/102 (65.69%), Postives = 74/102 (72.55%), Query Frame = 1


Query: 1   MAWRS-GSLSRTLISTVRSSSSRLTSSAPQLRPPPLTGPRRLPGHHFS-AASRSLGELGC 60
           MAWRS GSLSR+LIST+R SS R T S P+LRPPPL     L    FS + SR+LGELGC
Sbjct: 57  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSRNLGELGC 116

Query: 61  VQSFLPIYSMTAASCLTSHLTVNVRAFCELSHGTFCRTCQDR 101
             S LP   M   +CLTSHL V+VRAFCELSHGTF RTCQDR
Sbjct: 117 THSLLP---MLGTTCLTSHLCVDVRAFCELSHGTFYRTCQDR 155

[Close]

BLAST of Cla016072 vs. TrEMBL
Match: A0A0D2PMI7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G021900 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-24
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = 1


Query: 1   MAWR-SGSLSRTLISTVRSSSSRLTSSAPQLRPPPLTGPRRLPGHHFSAASRSLGELGCV 60
           MAWR +GSLSR+++S  R+ S R     P++RPP  + PR        A SR+LGELGCV
Sbjct: 1   MAWRGAGSLSRSVMSAARAPSLRTPPPMPRVRPPTSSAPRLQSRRLSFAPSRNLGELGCV 60

Query: 61  QSFLPIYSMTAASCLTSHLTVNVRAFCELSHGTFCRTCQDR 101
           QSFLP++++   +CLTSHLTV+VRA CELSHGTFCR+CQDR
Sbjct: 61  QSFLPLHNLVPMACLTSHLTVSVRACCELSHGTFCRSCQDR 101

[Close]

BLAST of Cla016072 vs. NCBI nr
Match: gi|659110022|ref|XP_008455007.1| (PREDICTED: uncharacterized protein LOC103495285 isoform X1 [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 7.4e-46
Identity = 95/100 (95.00%), Postives = 97/100 (97.00%), Query Frame = 1


Query: 1   MAWRSGSLSRTLISTVRSSSSRLTSSAPQLRPPPLTGPRRLPGHHFSAASRSLGELGCVQ 60
           MAWRSGSLSRTL+STVRSSSSRL+SSAPQLRPP LT PRRLPG HFSAASRSLGELGCVQ
Sbjct: 1   MAWRSGSLSRTLVSTVRSSSSRLSSSAPQLRPP-LTAPRRLPGRHFSAASRSLGELGCVQ 60

Query: 61  SFLPIYSMTAASCLTSHLTVNVRAFCELSHGTFCRTCQDR 101
           SFLPIYSMTAASCLTSHLTVNVRAFCELSHGTFCRTCQDR
Sbjct: 61  SFLPIYSMTAASCLTSHLTVNVRAFCELSHGTFCRTCQDR 99

[Close]

BLAST of Cla016072 vs. NCBI nr
Match: gi|449438351|ref|XP_004136952.1| (PREDICTED: uncharacterized protein LOC101219067 isoform X1 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 2.2e-45
Identity = 95/102 (93.14%), Postives = 96/102 (94.12%), Query Frame = 1


Query: 1   MAWRSGSLSRTLISTVRSSSSRLTSSAPQLRPP--PLTGPRRLPGHHFSAASRSLGELGC 60
           MAWRSGSLSRTLIS VRSSSSRL+SSAPQLRPP  PL  PRRLPG HFSAASRSLGELGC
Sbjct: 1   MAWRSGSLSRTLISNVRSSSSRLSSSAPQLRPPQPPLPAPRRLPGRHFSAASRSLGELGC 60

Query: 61  VQSFLPIYSMTAASCLTSHLTVNVRAFCELSHGTFCRTCQDR 101
           VQSFLPIYSMTAASCLTSHLTVNVRAFCELSHGTFCRTCQDR
Sbjct: 61  VQSFLPIYSMTAASCLTSHLTVNVRAFCELSHGTFCRTCQDR 102

[Close]

BLAST of Cla016072 vs. NCBI nr
Match: gi|659110024|ref|XP_008455008.1| (PREDICTED: uncharacterized protein LOC103495285 isoform X2 [Cucumis melo])

HSP 1 Score: 172.2 bits (435), Expect = 4.7e-40
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 1


Query: 1  MAWRSGSLSRTLISTVRSSSSRLTSSAPQLRPPPLTGPRRLPGHHFSAASRSLGELGCVQ 60
          MAWRSGSLSRTL+STVRSSSSRL+SSAPQLRPP LT PRRLPG HFSAASRSLGELGCVQ
Sbjct: 1  MAWRSGSLSRTLVSTVRSSSSRLSSSAPQLRPP-LTAPRRLPGRHFSAASRSLGELGCVQ 60

Query: 61 SFLPIYSMTAASCLTSHLTVNVRAFCELSHGT 93
          SFLPIYSMTAASCLTSHLTVNVRAFCELSHGT
Sbjct: 61 SFLPIYSMTAASCLTSHLTVNVRAFCELSHGT 91

[Close]

BLAST of Cla016072 vs. NCBI nr
Match: gi|700188641|gb|KGN43874.1| (hypothetical protein Csa_7G071630 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.4e-39
Identity = 87/94 (92.55%), Postives = 88/94 (93.62%), Query Frame = 1


Query: 1   MAWRSGSLSRTLISTVRSSSSRLTSSAPQLRPP--PLTGPRRLPGHHFSAASRSLGELGC 60
           MAWRSGSLSRTLIS VRSSSSRL+SSAPQLRPP  PL  PRRLPG HFSAASRSLGELGC
Sbjct: 59  MAWRSGSLSRTLISNVRSSSSRLSSSAPQLRPPQPPLPAPRRLPGRHFSAASRSLGELGC 118

Query: 61  VQSFLPIYSMTAASCLTSHLTVNVRAFCELSHGT 93
           VQSFLPIYSMTAASCLTSHLTVNVRAFCELSHGT
Sbjct: 119 VQSFLPIYSMTAASCLTSHLTVNVRAFCELSHGT 152

[Close]

BLAST of Cla016072 vs. NCBI nr
Match: gi|449438353|ref|XP_004136953.1| (PREDICTED: uncharacterized protein LOC101219067 isoform X2 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.4e-39
Identity = 87/94 (92.55%), Postives = 88/94 (93.62%), Query Frame = 1


Query: 1  MAWRSGSLSRTLISTVRSSSSRLTSSAPQLRPP--PLTGPRRLPGHHFSAASRSLGELGC 60
          MAWRSGSLSRTLIS VRSSSSRL+SSAPQLRPP  PL  PRRLPG HFSAASRSLGELGC
Sbjct: 1  MAWRSGSLSRTLISNVRSSSSRLSSSAPQLRPPQPPLPAPRRLPGRHFSAASRSLGELGC 60

Query: 61 VQSFLPIYSMTAASCLTSHLTVNVRAFCELSHGT 93
          VQSFLPIYSMTAASCLTSHLTVNVRAFCELSHGT
Sbjct: 61 VQSFLPIYSMTAASCLTSHLTVNVRAFCELSHGT 94

The following BLAST results are available for this feature:

BLAST of Cla016072 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4J1_CUCSA	9.5e-40	92.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071630 PE=4 SV=1	[more]
M5VJ60_PRUPE	1.6e-26	64.36	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013214mg PE=4 SV=1	[more]
A0A0D2NHH7_GOSRA	2.7e-26	64.36	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G234400 PE=4 SV=1	[more]
A0A0A0LBV2_CUCSA	8.6e-25	65.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199040 PE=4 SV=1	[more]
A0A0D2PMI7_GOSRA	1.5e-24	58.42	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G021900 PE=4 SV=1	[more]

BLAST of Cla016072 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110022\|ref\|XP_008455007.1\|	7.4e-46	95.00	PREDICTED: uncharacterized protein LOC103495285 isoform X1 [Cucumis melo]	[more]
gi\|449438351\|ref\|XP_004136952.1\|	2.2e-45	93.14	PREDICTED: uncharacterized protein LOC101219067 isoform X1 [Cucumis sativus]	[more]
gi\|659110024\|ref\|XP_008455008.1\|	4.7e-40	94.57	PREDICTED: uncharacterized protein LOC103495285 isoform X2 [Cucumis melo]	[more]
gi\|700188641\|gb\|KGN43874.1\|	1.4e-39	92.55	hypothetical protein Csa_7G071630 [Cucumis sativus]	[more]
gi\|449438353\|ref\|XP_004136953.1\|	1.4e-39	92.55	PREDICTED: uncharacterized protein LOC101219067 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0000741	karyogamy
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0004560	alpha-L-fucosidase activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003824	catalytic activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU12086	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU19111	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016072	Cla016072.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU19111	WMU19111	transcribed_cluster
WMU12086	WMU12086	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 1..100 score: 1.1
None	No IPR available	PANTHER	PTHR33156:SF7	SUBFAMILY NOT NAMED	coord: 1..100 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla016072	Cla97C02G033530	Watermelon (97103) v2	wmwmbB317
Cla016072	Csa3G199040	Cucumber (Chinese Long) v2	cuwmB270
Cla016072	Csa7G071630	Cucumber (Chinese Long) v2	cuwmB605
Cla016072	MELO3C018498	Melon (DHL92) v3.5.1	mewmB240
Cla016072	ClCG05G010360	Watermelon (Charleston Gray)	wcgwmB305
Cla016072	ClCG02G006540	Watermelon (Charleston Gray)	wcgwmB198
Cla016072	CSPI03G18070	Wild cucumber (PI 183967)	cpiwmB271
Cla016072	CSPI07G07100	Wild cucumber (PI 183967)	cpiwmB623
Cla016072	Cucsa.219380	Cucumber (Gy14) v1	cgywmB427
Cla016072	CmaCh11G017190	Cucurbita maxima (Rimu)	cmawmB127
Cla016072	CmoCh04G004980	Cucurbita moschata (Rifu)	cmowmB721
Cla016072	CmoCh11G013970	Cucurbita moschata (Rifu)	cmowmB109
Cla016072	Lsi05G002440	Bottle gourd (USVL1VR-Ls)	lsiwmB380
Cla016072	Lsi03G005510	Bottle gourd (USVL1VR-Ls)	lsiwmB268
Cla016072	Cp4.1LG01g02370	Cucurbita pepo (Zucchini)	cpewmB453
Cla016072	Cp4.1LG04g07840	Cucurbita pepo (Zucchini)	cpewmB665
Cla016072	CsGy3G017980	Cucumber (Gy14) v2	cgybwmB253
Cla016072	MELO3C031999.2	Melon (DHL92) v3.6.1	medwmB472
Cla016072	MELO3C018498.2	Melon (DHL92) v3.6.1	medwmB232
Cla016072	Carg08138	Silver-seed gourd	carwmB0375
Cla016072	Carg26988	Silver-seed gourd	carwmB0179
Cla016072	Carg19672	Silver-seed gourd	carwmB0289
Cla016072	CsaV3_3G018130	Cucumber (Chinese Long) v3	cucwmB279
Cla016072	Bhi01G001290	Wax gourd	wgowmB233
Cla016072	Bhi05G000992	Wax gourd	wgowmB273

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016072	Cucumber (Chinese Long) v3	cucwmB635
Cla016072	Watermelon (97103) v2	wmwmbB343
Cla016072	Watermelon (97103) v1	wmwmB131
Cla016072	Cucurbita maxima (Rimu)	cmawmB324
Cla016072	Cucurbita maxima (Rimu)	cmawmB503
Cla016072	Cucurbita maxima (Rimu)	cmawmB725
Cla016072	Cucurbita moschata (Rifu)	cmowmB496
Cla016072	Cucurbita pepo (Zucchini)	cpewmB268
Cla016072	Cucumber (Gy14) v2	cgybwmB567
Cla016072	Silver-seed gourd	carwmB0455