Carg19672 (gene) Silver-seed gourd

NameCarg19672
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCaspase-6 protein
LocationCucurbita_argyrosperma_scaffold_133 : 73779 .. 75058 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGGCGCTCTTCTGGATCTCTATCTCGCGCGCTCATTTCCTCTGTTAGGTCTTCTTCTCTCCGATCGTCTCCTTCTCTTCCTCGGCTTCGCCTGCCACCTATCACCGCTCGACCTCGCCTTCAATCTCGTCGCCTTTCATTTTCGACTTCCAGGTACTACACAAGTTTCTAAACTCGCTGCTTGGTTTCCTTGCGAAACGAATCGACGAACGAATTACTGAGGAATAGATGCCGTTGAATTGTGATTTATTTGATGCTCGATGTTCGTTCTTTTTGCCGTGTTGATCTCTGTTTACTATTGATTTCGGCTTTTGTAAATTTAGAATCATTTGGAGGTTGAATTTCTGTTGTTTATGTTTTTATCTTAATTTCAGATTAATTTTAATGCATTTTGAAGTTTTTGTTATCTGTGAAGTTATTTGTGATTGCGTTGTAAAAGAGTTGCATAAATCTTGTTAGCAATTATCCTTTACATTCCGACGCAACACTAGACTCGACCATTTTTCAGAATTATCACCGCAGGAAACAGCCTATCAAGTTTCTTATTATCTTAATTAAGGCCTTCTCAACTCTGCTGAGCTCAAAGGTTAATCACACGAACAGGAACCCCACCAATATTTCCAGAGTCTTCCCTATTCCATCTGATTTTTGAAAAATTCATCACATTATTACTTATGATCTTGTCTCTCTCTTGATCATCTTTGATTGGAAGGCTCTTTTCTGAGGTGCTTGATTGCAAATTTCTTGATTTCTTTCGTGAGTTGGTGCCACAGTTTACTCGTTTTTGTTTCAAATTGTCGTTTCCAGGAATTTGGGAGAACTGGGATGCACACAGTCTCTTCTGCCCATGCACAGCATCATGGGTGCTACCTGCCTGACATCACACCTCTGTGTTAGCGCGCGGGCTTTTTGCGAGCTTTCTCATGGTACCTTCTGCCGTACTTGTCAGGATCGCTAGTATCCTTCTGTGAGTTTTGTTTATAGGAAACATGAAAAACATATTGGAATCGTTTCTTCGTAAAGTAATTATTTAGTGCGACCATCGCTATAATCATCACGAAGTCATAACTTGTCAGTGAATTTGTGTTTGGATCATATGATGTGGCATTACTAAGCAGTTATTTTTATACCATTAAAATGTGATTTGGTAAGAAGAAATTGGATTGGGATGATAGGAAGGAATGGAAAAGATGGGTGATGCACGAGGACATTCTATTATTGGCAAGCCGGAGATCGTCACAACAGTTGTAGGTCCCTTTTCTGACATTTTTATTC

mRNA sequence

ATGGCTTGGCGCTCTTCTGGATCTCTATCTCGCGCGCTCATTTCCTCTGTTAGGTCTTCTTCTCTCCGATCGTCTCCTTCTCTTCCTCGGCTTCGCCTGCCACCTATCACCGCTCGACCTCGCCTTCAATCTCGTCGCCTTTCATTTTCGACTTCCAGGAATTTGGGAGAACTGGGATGCACACAGTCTCTTCTGCCCATGCACAGCATCATGGGTGCTACCTGCCTGACATCACACCTCTGTGTTAGCGCGCGGGCTTTTTGCGAGCTTTCTCATGGAAGGAATGGAAAAGATGGGTGATGCACGAGGACATTCTATTATTGGCAAGCCGGAGATCGTCACAACAGTTGTAGGTCCCTTTTCTGACATTTTTATTC

Coding sequence (CDS)

ATGGCTTGGCGCTCTTCTGGATCTCTATCTCGCGCGCTCATTTCCTCTGTTAGGTCTTCTTCTCTCCGATCGTCTCCTTCTCTTCCTCGGCTTCGCCTGCCACCTATCACCGCTCGACCTCGCCTTCAATCTCGTCGCCTTTCATTTTCGACTTCCAGGAATTTGGGAGAACTGGGATGCACACAGTCTCTTCTGCCCATGCACAGCATCATGGGTGCTACCTGCCTGACATCACACCTCTGTGTTAGCGCGCGGGCTTTTTGCGAGCTTTCTCATGGAAGGAATGGAAAAGATGGGTGA

Protein sequence

MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPITARPRLQSRRLSFSTSRNLGELGCTQSLLPMHSIMGATCLTSHLCVSARAFCELSHGRNGKDG
BLAST of Carg19672 vs. NCBI nr
Match: XP_022984256.1 (uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984257.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984259.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984260.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984261.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984262.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984263.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984264.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984265.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984266.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984267.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima])

HSP 1 Score: 185.3 bits (469), Expect = 1.0e-43
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 0

Query: 1   MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPITARPRLQSRRLSFSTSRNLGELGC 60
           MAWRSSGSLSRALISSVR SSLRSSPSLPRLRLPP+TARPRLQSRRL+FSTSRNLGELGC
Sbjct: 1   MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSRNLGELGC 60

Query: 61  TQSLLPMHSIMGATCLTSHLCVSARAFCELSHGRNGKDG 100
           TQSLLPMHSIMGATCLTSHLCV ARAFCELSHGRNGKDG
Sbjct: 61  TQSLLPMHSIMGATCLTSHLCVGARAFCELSHGRNGKDG 99

BLAST of Carg19672 vs. NCBI nr
Match: XP_023551740.1 (uncharacterized protein LOC111809622 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023551741.1 uncharacterized protein LOC111809622 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023551742.1 uncharacterized protein LOC111809622 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.4 bits (446), Expect = 4.8e-41
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0

Query: 1   MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPITARPRLQSRRLSFSTSRNLGELGC 60
           MAWRSSGSLSRALISSVRSSSLRSSPSLP LR P +TARPRLQSRRLSFSTSR LGELGC
Sbjct: 1   MAWRSSGSLSRALISSVRSSSLRSSPSLPWLRPPSLTARPRLQSRRLSFSTSRKLGELGC 60

Query: 61  TQSLLPMHSIMGATCLTSHLCVSARAFCELSHGRNGKDG 100
           TQSLLPMHSIMGATC TSHLCVSARAFCELSHGRNGKDG
Sbjct: 61  TQSLLPMHSIMGATCPTSHLCVSARAFCELSHGRNGKDG 99

BLAST of Carg19672 vs. NCBI nr
Match: XP_022922831.1 (uncharacterized protein LOC111430696 isoform X2 [Cucurbita moschata] >XP_022922832.1 uncharacterized protein LOC111430696 isoform X2 [Cucurbita moschata])

HSP 1 Score: 175.6 bits (444), Expect = 8.1e-41
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0

Query: 1   MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPITARPRLQSRRLSFSTSRNLGELGC 60
           MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPP+TARP     RLSFSTSRNLGELGC
Sbjct: 30  MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPLTARP-----RLSFSTSRNLGELGC 89

Query: 61  TQSLLPMHSIMGATCLTSHLCVSARAFCELSHGRNGKDG 100
           TQSLLPMHSIMGATCLTSHLCVSARAFCELSHGRNGKDG
Sbjct: 90  TQSLLPMHSIMGATCLTSHLCVSARAFCELSHGRNGKDG 123

BLAST of Carg19672 vs. NCBI nr
Match: XP_022984268.1 (uncharacterized protein LOC111482625 isoform X3 [Cucurbita maxima])

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0

Query: 1  MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPITARPRLQSRRLSFSTSRNLGELGC 60
          MAWRSSGSLSRALISSVR SSLRSSPSLPRLRLPP+TARPRLQSRRL+FSTSRNLGELGC
Sbjct: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSRNLGELGC 60

Query: 61 TQSLLPMHSIMGATCLTSHLCVSARAFCELSHG 94
          TQSLLPMHSIMGATCLTSHLCV ARAFCELSHG
Sbjct: 61 TQSLLPMHSIMGATCLTSHLCVGARAFCELSHG 93

BLAST of Carg19672 vs. NCBI nr
Match: XP_022984255.1 (uncharacterized protein LOC111482625 isoform X1 [Cucurbita maxima])

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0

Query: 1  MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPITARPRLQSRRLSFSTSRNLGELGC 60
          MAWRSSGSLSRALISSVR SSLRSSPSLPRLRLPP+TARPRLQSRRL+FSTSRNLGELGC
Sbjct: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSRNLGELGC 60

Query: 61 TQSLLPMHSIMGATCLTSHLCVSARAFCELSHG 94
          TQSLLPMHSIMGATCLTSHLCV ARAFCELSHG
Sbjct: 61 TQSLLPMHSIMGATCLTSHLCVGARAFCELSHG 93

BLAST of Carg19672 vs. TAIR10
Match: AT4G34265.1 (unknown protein)

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-11
Identity = 45/100 (45.00%), Postives = 59/100 (59.00%), Query Frame = 0

Query: 1   MAWRSSGSLSRALIS-SVRSSSLRSSPSLPRLRLPPITARPRLQSRRLSFSTSRNLGELG 60
           MAWRS+   +R+ +S + R+ SLRS P                          RNLGELG
Sbjct: 1   MAWRSA---ARSFVSATARAPSLRSPP--XXXXXXXXXXXXXXXXXXXXXXXXRNLGELG 60

Query: 61  CTQSLLPMHSIMGATCLTSHLCVSARAFCELSHGRNGKDG 100
           CT+S LP+++++ A  LTSHL V+ RAFCELS+G NGKDG
Sbjct: 61  CTESFLPLYNVVAAARLTSHLNVNLRAFCELSNG-NGKDG 94

BLAST of Carg19672 vs. TAIR10
Match: AT2G15000.4 (unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 0

Query: 1  MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPITARPRLQSRRLSFSTSRNLGELGC 60
          MAWR++GS +R+ +S+                               S S SRNLG LGC
Sbjct: 1  MAWRNAGSAARSFVSATARXXXXXXXXXXXXXXXXXXXXXXXXXFTFS-SPSRNLGALGC 60

Query: 61 TQSLLPMHSIMGATCLTSHLCVSARAFCELSHG 94
          TQS LP++S++  + LTSHL V+ RAFCELS+G
Sbjct: 61 TQSFLPLYSVVATSQLTSHLNVNLRAFCELSNG 92

BLAST of Carg19672 vs. TAIR10
Match: AT4G17310.1 (unknown protein)

HSP 1 Score: 44.3 bits (103), Expect = 5.1e-05
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 0

Query: 49 FSTSRNLGELGCTQSLLPMHSIMGATCLTSHLCVSARAFCELSHG 94
          FS SR   ELGC QSLLP+HS + A  LTS L  ++R+   LS G
Sbjct: 46 FSFSRCPSELGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQG 90

BLAST of Carg19672 vs. TrEMBL
Match: tr|A0A1U8JMY8|A0A1U8JMY8_GOSHI (uncharacterized protein LOC107908868 isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107908868 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-29
Identity = 70/99 (70.71%), Postives = 84/99 (84.85%), Query Frame = 0

Query: 1   MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPITARPRLQSRRLSFSTSRNLGELGC 60
           MAWRS+GSLSR++IS+ R+ SLRS P LPRLR P +++ PRLQSRRLS++ SRNLGELGC
Sbjct: 1   MAWRSAGSLSRSVISAARAPSLRSPPPLPRLR-PSVSSAPRLQSRRLSYAPSRNLGELGC 60

Query: 61  TQSLLPMHSIMGATCLTSHLCVSARAFCELSHGRNGKDG 100
            QSLLP+HS++   CLTSHL V+ RA CELSHGRNGKDG
Sbjct: 61  VQSLLPLHSMVPTACLTSHLTVNVRACCELSHGRNGKDG 98

BLAST of Carg19672 vs. TrEMBL
Match: tr|A0A2P5EYL7|A0A2P5EYL7_9ROSA (Caspase-6 protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136760 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.8e-27
Identity = 68/93 (73.12%), Postives = 78/93 (83.87%), Query Frame = 0

Query: 1  MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPITARPRLQSRRLSFSTSRNLGELGC 60
          MAWRS+GSLSR+L+SS R SS RS+PSLPRLR P + A PRL SRRLSF++ RNLGELGC
Sbjct: 1  MAWRSAGSLSRSLMSSARVSSQRSAPSLPRLRPPNLAAPPRLHSRRLSFASPRNLGELGC 60

Query: 61 TQSLLPMHSIMGATCLTSHLCVSARAFCELSHG 94
           QSLLP+H +  ATCLTSHL V+ RAFCELSHG
Sbjct: 61 VQSLLPLHGV-AATCLTSHLAVNVRAFCELSHG 92

BLAST of Carg19672 vs. TrEMBL
Match: tr|A0A2C9V4D4|A0A2C9V4D4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G075200 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.8e-27
Identity = 70/99 (70.71%), Postives = 79/99 (79.80%), Query Frame = 0

Query: 1   MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPITARPRLQSRRLSFSTSRNLGELGC 60
           MAWRS GSLSRALIS+ R+ S  SSP LPR+R PP TA PRLQSRR SF+TSRN+GELGC
Sbjct: 1   MAWRSGGSLSRALISASRAPSRLSSPPLPRIR-PPPTASPRLQSRRPSFATSRNMGELGC 60

Query: 61  TQSLLPMHSIMGATCLTSHLCVSARAFCELSHGRNGKDG 100
            QS LP+HS++    LTS L  + RAFCELSHGRNGKDG
Sbjct: 61  MQSFLPLHSMVSTNHLTSRLNANLRAFCELSHGRNGKDG 98

BLAST of Carg19672 vs. TrEMBL
Match: tr|F6H6A0|F6H6A0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0091g00250 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.9e-27
Identity = 68/99 (68.69%), Postives = 81/99 (81.82%), Query Frame = 0

Query: 1   MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPITARPRLQSRRLSFSTSRNLGELGC 60
           MAWR  GSLSR+L+S+ R+SSLRSSP+ PR+R PP+ A PRLQ+RRLSF+  RNLGELGC
Sbjct: 1   MAWR--GSLSRSLMSTARASSLRSSPAAPRVRPPPLAA-PRLQTRRLSFTNPRNLGELGC 60

Query: 61  TQSLLPMHSIMGATCLTSHLCVSARAFCELSHGRNGKDG 100
            QSLLP+H++M +  LTSHL V  RA CEL HGRNGKDG
Sbjct: 61  VQSLLPLHNVMASPRLTSHLSVDVRACCELFHGRNGKDG 96

BLAST of Carg19672 vs. TrEMBL
Match: tr|A0A2I4DQH0|A0A2I4DQH0_9ROSI (uncharacterized protein LOC108982466 isoform X2 OS=Juglans regia OX=51240 GN=LOC108982466 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 71/101 (70.30%), Postives = 85/101 (84.16%), Query Frame = 0

Query: 1   MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPITARPRLQSRRLSFST--SRNLGEL 60
           MAWR SGSLSR+L+++VRSSS  SSP LPRLR PP+T  PR+QSRRLSF++   RNLGEL
Sbjct: 1   MAWR-SGSLSRSLLTTVRSSSRSSSPPLPRLRPPPLTP-PRVQSRRLSFASPAPRNLGEL 60

Query: 61  GCTQSLLPMHSIMGATCLTSHLCVSARAFCELSHGRNGKDG 100
           GCTQSLLP+ +++  T LTSHL V+ RAFCELSHGR+GKDG
Sbjct: 61  GCTQSLLPLGNVLATTRLTSHLSVNVRAFCELSHGRSGKDG 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022984256.11.0e-4395.96uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984257... [more]
XP_023551740.14.8e-4193.94uncharacterized protein LOC111809622 isoform X3 [Cucurbita pepo subsp. pepo] >XP... [more]
XP_022922831.18.1e-4193.94uncharacterized protein LOC111430696 isoform X2 [Cucurbita moschata] >XP_0229228... [more]
XP_022984268.11.2e-3995.70uncharacterized protein LOC111482625 isoform X3 [Cucurbita maxima][more]
XP_022984255.11.2e-3995.70uncharacterized protein LOC111482625 isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT4G34265.12.8e-1145.00unknown protein[more]
AT2G15000.41.2e-0940.86unknown protein[more]
AT4G17310.15.1e-0553.33unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1U8JMY8|A0A1U8JMY8_GOSHI2.8e-2970.71uncharacterized protein LOC107908868 isoform X2 OS=Gossypium hirsutum OX=3635 GN... [more]
tr|A0A2P5EYL7|A0A2P5EYL7_9ROSA5.8e-2773.12Caspase-6 protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136760 PE=4 SV=1[more]
tr|A0A2C9V4D4|A0A2C9V4D4_MANES5.8e-2770.71Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G075200 PE=4 SV=... [more]
tr|F6H6A0|F6H6A0_VITVI9.9e-2768.69Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0091g00250 PE=4 SV=... [more]
tr|A0A2I4DQH0|A0A2I4DQH0_9ROSI2.2e-2670.30uncharacterized protein LOC108982466 isoform X2 OS=Juglans regia OX=51240 GN=LOC... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19672-RACarg19672-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..37
NoneNo IPR availablePANTHERPTHR33156FAMILY NOT NAMEDcoord: 1..99
NoneNo IPR availablePANTHERPTHR33156:SF7SUBFAMILY NOT NAMEDcoord: 1..99

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19672Carg08138Silver-seed gourdcarcarB324