Cla016070 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016070
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	BHLH transcription factor-like protein (AHRD V1 -- Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
Location	Chr2 : 7109695 .. 7110881 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAAAACAGTCCTTTACGAGGGACCACCCCGGACCAACAACAGCTACCAGTTTCTCTCAGCTTCTGTTTTCCTCACAACATGATGATGATGATAATGATGATATTGATAAAAATCATCATCTTCATCATCAAATCTTTGATTACTCTGTTTCCTCTGCTTCTTCTCCTTTCGCTATTGATAACCCACCCAAGATGCTCTGTTTCGGCAGCAAAGAAGAAGACGAAGAACATCCACAGCTGGGTTTTAAATCGCATCAAAGATCAGGCCACGCATGCAGTGATTCCTCTTCAACTTCTTCTGGGAATGGCCTCAAATCTGATTCCGTAAACACAAAAATTTTAACCTTTTAATTCCTTTCCTTGGTTTTTCCTGTTTCTTTCTTTTATGACCTTTTTAAAGTTAAACTGTTGGTTTTTGTAGAAATTGAAAAGGAGAAATGGATCAAACCCAGAAATGTCCGTCATTAAAGAAGCTCCTTTACTGAATCAGAAAGCTTCGAAAAAGACCAAACCTGATGCTACCTGTTCTGCTGGACATGCAAAGGTCAATTTTTACCATAACTTTCATGTTCTTCTTTTTCTTTTACTCTGTTTCTGAAATGGTTTATTTTTATTTTTTATTTTTTATTATTTTTTTTTTATTTAGAGGAAGGAGAAATTAGGGGAAAGAATCACAGCACTACAACAATTGGTTTCACCCTTTGGCAAGGTTACAATAAACAAGAACATTTAATTTGATTCTTCAATTTTTTGAGAATTTAATATGAATATATATATTTTTTTAATGTTGATGGATTCAAAAAACAGACAGATACAGCATCAGTACTACATGAAGCAATGGGTTACATCAAATTTCTACATGAACAAGTTCAAGTCTTGTGCAGTCCTTACTTGCAAAAAAGTCAGCTGCTTTCTTCTCAATCAACCAGTGTAAGCACTTTCTGACTAAAAAGAAGAAGCTTTATCATTATTTTTATTGTTATTTTATAAAAAAGAAAACCCATTTTTTTTTTTTTATAATTTTCTTTATGTTTCTGAAGGGAAGAGAAAATGGGGAAATAGAGGGGGATCTGAAAAGCAGGGGGTTGTGTTTGATTCCAGTGGACTGTAGCTTGCATTTGGCTGATTGTACAGTTGCAGACTTTTGGTCTCCAGCCATGGCTATGGGGAGGAAGCTTTGA

mRNA sequence

ATGGCGGAAAAACAGTCCTTTACGAGGGACCACCCCGGACCAACAACAGCTACCAGTTTCTCTCAGCTTCTGTTTTCCTCACAACATGATGATGATGATAATGATGATATTGATAAAAATCATCATCTTCATCATCAAATCTTTGATTACTCTGTTTCCTCTGCTTCTTCTCCTTTCGCTATTGATAACCCACCCAAGATGCTCTGTTTCGGCAGCAAAGAAGAAGACGAAGAACATCCACAGCTGGGTTTTAAATCGCATCAAAGATCAGGCCACGCATGCAGTGATTCCTCTTCAACTTCTTCTGGGAATGGCCTCAAATCTGATTCCAAATTGAAAAGGAGAAATGGATCAAACCCAGAAATGTCCGTCATTAAAGAAGCTCCTTTACTGAATCAGAAAGCTTCGAAAAAGACCAAACCTGATGCTACCTGTTCTGCTGGACATGCAAAGAGGAAGGAGAAATTAGGGGAAAGAATCACAGCACTACAACAATTGGTTTCACCCTTTGGCAAGACAGATACAGCATCAGTACTACATGAAGCAATGGGTTACATCAAATTTCTACATGAACAAGTTCAAGTCTTGTGCAGTCCTTACTTGCAAAAAAGTCAGCTGCTTTCTTCTCAATCAACCAGTGGAAGAGAAAATGGGGAAATAGAGGGGGATCTGAAAAGCAGGGGGTTGTGTTTGATTCCAGTGGACTGTAGCTTGCATTTGGCTGATTGTACAGTTGCAGACTTTTGGTCTCCAGCCATGGCTATGGGGAGGAAGCTTTGA

Coding sequence (CDS)

ATGGCGGAAAAACAGTCCTTTACGAGGGACCACCCCGGACCAACAACAGCTACCAGTTTCTCTCAGCTTCTGTTTTCCTCACAACATGATGATGATGATAATGATGATATTGATAAAAATCATCATCTTCATCATCAAATCTTTGATTACTCTGTTTCCTCTGCTTCTTCTCCTTTCGCTATTGATAACCCACCCAAGATGCTCTGTTTCGGCAGCAAAGAAGAAGACGAAGAACATCCACAGCTGGGTTTTAAATCGCATCAAAGATCAGGCCACGCATGCAGTGATTCCTCTTCAACTTCTTCTGGGAATGGCCTCAAATCTGATTCCAAATTGAAAAGGAGAAATGGATCAAACCCAGAAATGTCCGTCATTAAAGAAGCTCCTTTACTGAATCAGAAAGCTTCGAAAAAGACCAAACCTGATGCTACCTGTTCTGCTGGACATGCAAAGAGGAAGGAGAAATTAGGGGAAAGAATCACAGCACTACAACAATTGGTTTCACCCTTTGGCAAGACAGATACAGCATCAGTACTACATGAAGCAATGGGTTACATCAAATTTCTACATGAACAAGTTCAAGTCTTGTGCAGTCCTTACTTGCAAAAAAGTCAGCTGCTTTCTTCTCAATCAACCAGTGGAAGAGAAAATGGGGAAATAGAGGGGGATCTGAAAAGCAGGGGGTTGTGTTTGATTCCAGTGGACTGTAGCTTGCATTTGGCTGATTGTACAGTTGCAGACTTTTGGTCTCCAGCCATGGCTATGGGGAGGAAGCTTTGA

Protein sequence

MAEKQSFTRDHPGPTTATSFSQLLFSSQHDDDDNDDIDKNHHLHHQIFDYSVSSASSPFAIDNPPKMLCFGSKEEDEEHPQLGFKSHQRSGHACSDSSSTSSGNGLKSDSKLKRRNGSNPEMSVIKEAPLLNQKASKKTKPDATCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSTSGRENGEIEGDLKSRGLCLIPVDCSLHLADCTVADFWSPAMAMGRKL

Homology

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BLAST of Cla016070 vs. Swiss-Prot
Match: BH113_ARATH (Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.2e-32
Identity = 103/254 (40.55%), Postives = 125/254 (49.21%), Query Frame = 1


Query: 18  TSFSQLLFSSQHDDDDNDDIDKNHHLHHQIFDYSVSSASSPFAIDNPPKMLCF-GSKEED 77
           TSFS+LL  S      + D    H     + D    S    F+     +MLCF G  + D
Sbjct: 20  TSFSELLMFSDGVLSSSSD----HQPEGNVGDGGEDSLGFVFSGKTGSRMLCFSGGYQND 79

Query: 78  EEH-------PQLGFKSH---------QRSGHACSDSSSTSSGNGLKSDSKLKRRNGSNP 137
           +E        P  G             + S  AC+   ST      KS +K +   G+  
Sbjct: 80  DESLFLEPSVPTSGVSDLDPSCIKIDCRNSNDACTVDKST------KSSTKKRTGTGNGQ 139

Query: 138 EMSVIKEAPLLNQKASKKTKPDAT-CSAGHAK-RKEKLGERITALQQLVSPFGKTDTASV 197
           E          N+K  KK K +    S G AK RKE+LGERI ALQQLVSP+GKTD ASV
Sbjct: 140 ESDQ-------NRKPGKKGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASV 199

Query: 198 LHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSTSGRENGEIEGDLKSRGLCLIPVDCSL 253
           LHEAMGYIKFL +Q+QVLCSPYL    L     T          DL+SRGLCL+PV  ++
Sbjct: 200 LHEAMGYIKFLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVPVSSTV 256

[Close]

BLAST of Cla016070 vs. Swiss-Prot
Match: BH123_ARATH (Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 62/122 (50.82%), Postives = 79/122 (64.75%), Query Frame = 1


Query: 132 NQKASKKTKPDATCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHE 191
           +Q A+K+ K +A   +   KRKEK+G+RI ALQQLVSPFGKTD ASVL EA+ YIKFLH+
Sbjct: 326 HQPAAKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQ 385

Query: 192 QVQVLCSPYLQKSQLLSSQSTSGRENGEI--EGDLKSRGLCLIPVDCSLHLADCTVADFW 251
           QV  L +PY++    L  Q +      E+  E DL+SRGLCL+PV  +  +   T  DFW
Sbjct: 386 QVSALSNPYMKSGASLQHQQSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFW 445

[Close]

BLAST of Cla016070 vs. Swiss-Prot
Match: BH110_ARATH (Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-23
Identity = 84/247 (34.01%), Postives = 120/247 (48.58%), Query Frame = 1


Query: 2   AEKQSFTRDHPGPTTATSFSQLLFSSQHDDDDNDDIDKNHHLHHQIFDYSVSSASSPFAI 61
           + + +F++ +P    + + S L  S +   DD  +I +   ++ Q+FD  +   +     
Sbjct: 192 SHRGNFSQIYP----SVNISSLSESRKMSMDDMSNISRPFDINMQVFDGRLFEGNVLVPP 251

Query: 62  DNPPKMLCFGSKEEDEEHPQLGFKSHQRSGHACSDSSSTSSGNGLKSDSKLKRRNGSNPE 121
            N  ++   G          L F  H +       SS T       ++ +       N  
Sbjct: 252 FNAQEISSLGMSRGSLPSFGLPFHHHLQQTLPHLSSSPTHQMEMFSNEPQTSEGKRHNFL 311

Query: 122 MSVIKEAPLLNQKASKKTKPDATCSAGHAK-RKEKLGERITALQQLVSPFGKTDTASVLH 181
           M     A    + ASKK + ++  S    K RKEKLG+RI ALQQLVSPFGKTDTASVL 
Sbjct: 312 M-----ATKAGENASKKPRVESRSSCPPFKVRKEKLGDRIAALQQLVSPFGKTDTASVLM 371

Query: 182 EAMGYIKFLHEQVQVLCSPYLQ-------KSQLLSSQSTSGRENGEIEGDLKSRGLCLIP 241
           EA+GYIKFL  Q++ L  PY++       K+  L SQS  G E  E   DL+SRGLCL+P
Sbjct: 372 EAIGYIKFLQSQIETLSVPYMRASRNRPGKASQLVSQSQEGDE--EETRDLRSRGLCLVP 427

[Close]

BLAST of Cla016070 vs. Swiss-Prot
Match: BH112_ARATH (Transcription factor bHLH112 OS=Arabidopsis thaliana GN=BHLH112 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.5e-23
Identity = 63/127 (49.61%), Postives = 81/127 (63.78%), Query Frame = 1


Query: 132 NQKASKKTKPDATCSAGHAK-RKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLH 191
           N+ A+KK +          K RKE L ++IT+LQQLVSPFGKTDTASVL EA+ YIKFLH
Sbjct: 261 NESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLH 320

Query: 192 EQVQVLCSPYL------QKSQLLSSQSTSGRENGEIEGDLKSRGLCLIPVDCSLHLADCT 251
           +QV VL +PY+      Q+ Q +S +S S  EN   E  L+  GLCL+P+  +  +A+ T
Sbjct: 321 DQVTVLSTPYMKQGASNQQQQQISGKSKSQDENENHE--LRGHGLCLVPISSTFPVANET 380

[Close]

BLAST of Cla016070 vs. Swiss-Prot
Match: BH133_ARATH (Transcription factor bHLH133 OS=Arabidopsis thaliana GN=BHLH133 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-22
Identity = 88/275 (32.00%), Postives = 117/275 (42.55%), Query Frame = 1


Query: 19  SFSQLLFSSQHDDDDNDDIDKNHHLH---HQIFDYSVSSASSPFAIDNPPKMLCFGSKEE 78
           S SQLL       ++      NHH H   HQ +            + +   M     K+E
Sbjct: 94  SLSQLLLGGLMMGEEEKMEMMNHHHHQNQHQSYQAKRIQNWEEQVLRHQASM-----KQE 153

Query: 79  DEEHPQLGFKSHQRS--GHACSDSSSTSSGNGLKSDSKLKRRNGSNPEMSVIKEAPLLNQ 138
              +   G  S   S    +C+   +T+  N     S L     ++ EM       + + 
Sbjct: 154 SSNNNSYGIMSSPNSPPNKSCATIINTNEDNNNNIHSGLNLSECNSSEM-------IGSS 213

Query: 139 KASKKTKPDATCSAGHAK-RKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQ 198
            A+KK K     S    K RKEKLG RI +L QLVSPFGKTDTASVL EA+GYI+FLH Q
Sbjct: 214 FANKKPKLQVPSSQSTLKVRKEKLGGRIASLHQLVSPFGKTDTASVLSEAIGYIRFLHSQ 273

Query: 199 VQVLCSPYL----------QKSQ-------------------------LLSSQSTSGREN 253
           ++ L  PY           Q +Q                         L S+ +     N
Sbjct: 274 IEALSLPYFGTPSRNNMMHQHAQRNMNGIFPEDPGQLVNEYCMKRGVSLSSTDNQKSNPN 333

[Close]

BLAST of Cla016070 vs. TrEMBL
Match: A0A0A0K7T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071650 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 4.7e-115
Identity = 215/260 (82.69%), Postives = 229/260 (88.08%), Query Frame = 1


Query: 1   MAEKQSFTRDHPGPTTATSFSQLLFSSQHDDDDNDDIDKN-HHLHHQIFDYSVSSASSP- 60
           MAE QSFT DH  PTTAT+FSQLLFS  HDDDD++D+D +    HHQIFDYSVSS+SS  
Sbjct: 1   MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHHQIFDYSVSSSSSSS 60

Query: 61  FAIDNPPKMLCFGSKEEDEEHPQLGFKSHQRSGHACSDSSSTSSGNGLKSDSKLKRRNGS 120
           FAIDNPPKMLCFG+KEED+EHPQLGFKS QRS HACSDSSS SSGNGLK + KLKRRNGS
Sbjct: 61  FAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEFKLKRRNGS 120

Query: 121 NPEMSVIKEAPLLNQKASKKTKPDATCSAGHAKRKEKLGERITALQQLVSPFGKTDTASV 180
           NPEM+ IKEA       SKKTKP+A CSAGHAKRKEKLGERITALQQLVSPFGKTDTASV
Sbjct: 121 NPEMAAIKEA-------SKKTKPEAPCSAGHAKRKEKLGERITALQQLVSPFGKTDTASV 180

Query: 181 LHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSTSGRENGEIEGDLKSRGLCLIPVDCSL 240
           LHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQS +GR N E EGDLKSRGLCLIPVDCSL
Sbjct: 181 LHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSATGRGNEETEGDLKSRGLCLIPVDCSL 240

Query: 241 HLADCTVADFWSPAMAMGRK 259
           HLA+CTVADFWSPAMAMG+K
Sbjct: 241 HLANCTVADFWSPAMAMGKK 253

[Close]

BLAST of Cla016070 vs. TrEMBL
Match: F6H6A3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00210 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 6.0e-54
Identity = 140/268 (52.24%), Postives = 172/268 (64.18%), Query Frame = 1


Query: 1   MAEKQSFTRDHPGPTTATSFSQLLFSSQHDDDDNDDIDKNHHLHHQIFDYSVSSASSPFA 60
           MA+ + F  DH    +  SFSQLLFS   DD    DID++       F YS S     F+
Sbjct: 1   MADSEGFGEDH---LSGGSFSQLLFS---DDVVGLDIDES-------FAYSPS-----FS 60

Query: 61  IDNPPKMLCFGSKEEDEEHPQLGF----KSHQRSGHACSDSSSTSSGNGL---KSDSKLK 120
            + PPKMLCFG  + +     +GF    K+ Q+SG  CSDSSS SS N     K+    K
Sbjct: 61  NEKPPKMLCFGGYQSE-----VGFAEPTKTPQKSGVTCSDSSSASSTNNTNINKASKSNK 120

Query: 121 RRNGSN----PEMSVIKEAPLLNQKASKKTKPDATCSAGHAK-RKEKLGERITALQQLVS 180
           +RNGS     P  S + +AP   Q+ SKKTK +   S GH K +KEKLGERITALQQLVS
Sbjct: 121 KRNGSGNMSVPTSSGLAKAPAGGQRNSKKTKSENPTSGGHVKVKKEKLGERITALQQLVS 180

Query: 181 PFGKTDTASVLHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSTSGRENGEIEG--DLKS 240
           PFGKTDTASVLHEAMGYI+FL +QVQVLCSPYLQ +   S+  + G ENGE +   DL+S
Sbjct: 181 PFGKTDTASVLHEAMGYIRFLQDQVQVLCSPYLQ-TLPSSAHMSEGGENGEEKSSKDLRS 240

Query: 241 RGLCLIPVDCSLHLADCTVADFWSPAMA 255
           RGLCL+PV+C+ H+A+   AD+WSPAMA
Sbjct: 241 RGLCLVPVECTEHVANNNGADYWSPAMA 244

[Close]

BLAST of Cla016070 vs. TrEMBL
Match: V7BDR6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G041200g PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 5.6e-52
Identity = 132/281 (46.98%), Postives = 162/281 (57.65%), Query Frame = 1


Query: 1   MAEKQSFTRDHPGPTTATSFSQLLFSSQHDDDDNDDIDKNHH--------LHHQIFDYSV 60
           M  K  F   H    T T+FSQLLF   HD   + D    HH          H  ++++ 
Sbjct: 1   MEPKDEFELHHFTAPTGTTFSQLLFGDDHDHHHHHD----HHDATALPLPQDHSSYNHNN 60

Query: 61  SSASSPFAIDNPPKMLCFGSKEEDEEHPQLGFK----SHQRSGHACSDSSSTSSGNGL-- 120
            S S  F+   PPKMLCFG+ +     P L       + Q+S    SDSSS SS N    
Sbjct: 61  LSRSPLFSFHKPPKMLCFGNHQNQ---PHLSLPPTTVTPQKSVITSSDSSSASSSNYTNT 120

Query: 121 ------KSDSKLKRRNGSNPEMSVIKEAPLLNQKASKKTKPDATCSAGHAKRKEKLGERI 180
                 KS S  K+RNG   E   + +  +  Q+ +KKTK +   S GHAKRKEKLGERI
Sbjct: 121 GFNSLPKSTSLQKKRNGLGQEP--VTKVGVGGQRQTKKTKAENPTSTGHAKRKEKLGERI 180

Query: 181 TALQQLVSPFGKTDTASVLHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSTSGRENG-- 240
            ALQQLVSPFGKTDTASVLHEAMGYI+FLH+QVQVLCSPYLQ             EN   
Sbjct: 181 AALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQTLSSSDQHQHGDGENNEE 240

Query: 241 EIEGDLKSRGLCLIPVDCSLHLADCTVADFWSPAMAMGRKL 260
           E++ +L+SRGLCLIPV C++H+A    ADFWSP  A+G+K+
Sbjct: 241 EVKKELRSRGLCLIPVGCTVHVASSNGADFWSPG-AIGKKV 271

[Close]

BLAST of Cla016070 vs. TrEMBL
Match: V7BAZ7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G041200g PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-51
Identity = 132/278 (47.48%), Postives = 162/278 (58.27%), Query Frame = 1


Query: 1   MAEKQSFTRDHPGPTTATSFSQLLFSSQHDDDDNDDIDKNHH--------LHHQIFDYSV 60
           M  K  F   H    T T+FSQLLF   HD   + D    HH          H  ++++ 
Sbjct: 1   MEPKDEFELHHFTAPTGTTFSQLLFGDDHDHHHHHD----HHDATALPLPQDHSSYNHNN 60

Query: 61  SSASSPFAIDNPPKMLCFGSKEEDEEHPQLGFK----SHQRSGHACSDSSSTSSGN---- 120
            S S  F+   PPKMLCFG+ +     P L       + Q+S    SDSSS SS N    
Sbjct: 61  LSRSPLFSFHKPPKMLCFGNHQNQ---PHLSLPPTTVTPQKSVITSSDSSSASSSNYTNT 120

Query: 121 GLKSDSK-LKRRNGSNPEMSVIKEAPLLNQKASKKTKPDATCSAGHAKRKEKLGERITAL 180
           G  S  K  K+RNG   E   + +  +  Q+ +KKTK +   S GHAKRKEKLGERI AL
Sbjct: 121 GFNSLPKSTKKRNGLGQEP--VTKVGVGGQRQTKKTKAENPTSTGHAKRKEKLGERIAAL 180

Query: 181 QQLVSPFGKTDTASVLHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSTSGRENG--EIE 240
           QQLVSPFGKTDTASVLHEAMGYI+FLH+QVQVLCSPYLQ             EN   E++
Sbjct: 181 QQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQTLSSSDQHQHGDGENNEEEVK 240

Query: 241 GDLKSRGLCLIPVDCSLHLADCTVADFWSPAMAMGRKL 260
            +L+SRGLCLIPV C++H+A    ADFWSP  A+G+K+
Sbjct: 241 KELRSRGLCLIPVGCTVHVASSNGADFWSPG-AIGKKV 268

[Close]

BLAST of Cla016070 vs. TrEMBL
Match: A0A0S3SM88_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G046400 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.1e-51
Identity = 127/256 (49.61%), Postives = 154/256 (60.16%), Query Frame = 1


Query: 16  TATSFSQLLFSSQHDDDDNDDIDKNHHL----HHQIFDYSVSSASSPFAIDNPPKMLCFG 75
           T T+FSQLLF         DD+D    L    HH  +D+   SAS  F+   PPKMLCFG
Sbjct: 10  TGTTFSQLLFG--------DDLDATPALPLPHHHCSYDHHTLSASPLFSFHKPPKMLCFG 69

Query: 76  SKEEDEEHPQLGFKSHQRSGHACSDSSSTSSGNGLKS-----DSKLKRRNGSNPEMSVIK 135
           + +     P     + Q+S    SDSSS SS N   +         K+RNG   E   + 
Sbjct: 70  NHQTQPHIPPT-IVTPQKSVITSSDSSSASSSNHTNTAFTSLPKSTKKRNGLGQEP--VT 129

Query: 136 EAPLLNQKASKKTKPDATCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYI 195
           +  +  Q+ +KKTK +   S GHAKRKEKLGERI ALQQLVSPFGKTDTASVLHEAMGYI
Sbjct: 130 KVGVGGQRLTKKTKAENPTSTGHAKRKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYI 189

Query: 196 KFLHEQVQVLCSPYLQKSQLLSSQSTSG---RENGEIEGDLKSRGLCLIPVDCSLHLADC 255
           +FLH+QVQVLCSPYLQ       Q   G       E++ DL+SRGLCLIPV C++H+A  
Sbjct: 190 RFLHDQVQVLCSPYLQSLSSSHHQHQHGDGENNEEEVKKDLRSRGLCLIPVGCTVHVASS 249

Query: 256 TVADFWSPAMAMGRKL 260
             ADFWSP  A+G K+
Sbjct: 250 NGADFWSPG-AIGNKV 253

[Close]

BLAST of Cla016070 vs. NCBI nr
Match: gi|659110014|ref|XP_008455002.1| (PREDICTED: transcription factor bHLH113 [Cucumis melo])

HSP 1 Score: 428.7 bits (1101), Expect = 7.2e-117
Identity = 214/258 (82.95%), Postives = 230/258 (89.15%), Query Frame = 1


Query: 1   MAEKQSFTRDHPGPTTATSFSQLLFSSQHDDDDNDDIDKNHHLHHQIFDYSVSSASSPFA 60
           MAE QSF  DH  PTTAT+FSQLLFS  HDDDD++D+D + + HHQIFDYSVSS+SS FA
Sbjct: 1   MAENQSFAGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDKN-HHQIFDYSVSSSSSSFA 60

Query: 61  IDNPPKMLCFGSKEEDEEHPQLGFKSHQRSGHACSDSSSTSSGNGLKSDSKLKRRNGSNP 120
           IDNPPKMLCFG+KEED+EHPQLGFKS QRS HACSDSSS SSGNGLK + KLKRRNGSNP
Sbjct: 61  IDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEFKLKRRNGSNP 120

Query: 121 EMSVIKEAPLLNQKASKKTKPDATCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLH 180
           E + IKEA       SKKTKP+A CSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLH
Sbjct: 121 ETAAIKEA-------SKKTKPEAPCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLH 180

Query: 181 EAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSTSGRENGEIEGDLKSRGLCLIPVDCSLHL 240
           EAMGYIKFLHEQVQVLCSPYLQKSQLLSSQS +G+ENGE EGDLKSRGLCLIPVDCSLHL
Sbjct: 181 EAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSATGKENGETEGDLKSRGLCLIPVDCSLHL 240

Query: 241 ADCTVADFWSPAMAMGRK 259
           A+CTVADFWSPAMAMG+K
Sbjct: 241 ANCTVADFWSPAMAMGKK 250

[Close]

BLAST of Cla016070 vs. NCBI nr
Match: gi|449438633|ref|XP_004137092.1| (PREDICTED: transcription factor bHLH113 [Cucumis sativus])

HSP 1 Score: 422.2 bits (1084), Expect = 6.7e-115
Identity = 215/260 (82.69%), Postives = 229/260 (88.08%), Query Frame = 1


Query: 1   MAEKQSFTRDHPGPTTATSFSQLLFSSQHDDDDNDDIDKN-HHLHHQIFDYSVSSASSP- 60
           MAE QSFT DH  PTTAT+FSQLLFS  HDDDD++D+D +    HHQIFDYSVSS+SS  
Sbjct: 1   MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHHQIFDYSVSSSSSSS 60

Query: 61  FAIDNPPKMLCFGSKEEDEEHPQLGFKSHQRSGHACSDSSSTSSGNGLKSDSKLKRRNGS 120
           FAIDNPPKMLCFG+KEED+EHPQLGFKS QRS HACSDSSS SSGNGLK + KLKRRNGS
Sbjct: 61  FAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEFKLKRRNGS 120

Query: 121 NPEMSVIKEAPLLNQKASKKTKPDATCSAGHAKRKEKLGERITALQQLVSPFGKTDTASV 180
           NPEM+ IKEA       SKKTKP+A CSAGHAKRKEKLGERITALQQLVSPFGKTDTASV
Sbjct: 121 NPEMAAIKEA-------SKKTKPEAPCSAGHAKRKEKLGERITALQQLVSPFGKTDTASV 180

Query: 181 LHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSTSGRENGEIEGDLKSRGLCLIPVDCSL 240
           LHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQS +GR N E EGDLKSRGLCLIPVDCSL
Sbjct: 181 LHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSATGRGNEETEGDLKSRGLCLIPVDCSL 240

Query: 241 HLADCTVADFWSPAMAMGRK 259
           HLA+CTVADFWSPAMAMG+K
Sbjct: 241 HLANCTVADFWSPAMAMGKK 253

[Close]

BLAST of Cla016070 vs. NCBI nr
Match: gi|1009150070|ref|XP_015892818.1| (PREDICTED: transcription factor bHLH113 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 229.6 bits (584), Expect = 6.4e-57
Identity = 138/267 (51.69%), Postives = 175/267 (65.54%), Query Frame = 1


Query: 1   MAEKQSFTRDHPGPTTATSFSQLLFSSQHDDDDNDDIDKNHHLHHQIFDYSVSSASSPFA 60
           MAE   F RDH   T  T+FSQLLF+   DD     +D N     Q F+++ SSA S  A
Sbjct: 1   MAENDGFDRDHLAVTAGTNFSQLLFAD--DDSSVVGLDVN-----QSFNFASSSAFS--A 60

Query: 61  IDNPPKMLCFGSKEEDEEHPQLGF----KSHQRSGHACSDSSSTSSGNGLK----SDSKL 120
            + PPKMLCFG+ + +E+   L F    ++ Q+SG  CSDSSSTSS N L     S    
Sbjct: 61  AEKPPKMLCFGNYQYNED---LVFSDTTRTSQKSGVTCSDSSSTSSSNRLSVNTLSKPNQ 120

Query: 121 KRRNGSNPEM----SVIKEAPLLNQKASKKTKPDATCSAGHAKRKEKLGERITALQQLVS 180
           K+RNGS+ E     S +    + +QK SK+TK +   +   AKRKEKLGERI ALQQLVS
Sbjct: 121 KKRNGSDQESVQSTSAMTTYVMASQKTSKRTKTENPTTTIPAKRKEKLGERIAALQQLVS 180

Query: 181 PFGKTDTASVLHEAMGYIKFLHEQVQVLCSPYLQK-SQLLSSQSTSGRENGEIEGDLKSR 240
           PFGKTDTASVLHEAMGYIKFL +QVQVLCSPYLQ+ + L  S+     + G+   +L+SR
Sbjct: 181 PFGKTDTASVLHEAMGYIKFLQDQVQVLCSPYLQRLASLPESEGGENGDGGKARKELRSR 240

Query: 241 GLCLIPVDCSLHLADCTVADFWSPAMA 255
           GLCL+PV+C++H+A+   ADFWSPAM+
Sbjct: 241 GLCLVPVECTVHVANDNGADFWSPAMS 255

[Close]

BLAST of Cla016070 vs. NCBI nr
Match: gi|1009150072|ref|XP_015892819.1| (PREDICTED: transcription factor bHLH113 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 228.4 bits (581), Expect = 1.4e-56
Identity = 137/266 (51.50%), Postives = 176/266 (66.17%), Query Frame = 1


Query: 1   MAEKQSFTRDHPGPTTATSFSQLLFSSQHDDDDNDDIDKNHHLHHQIFDYSVSSASSPFA 60
           MAE   F RDH   T  T+FSQLLF+   DD     +D N     Q F+++ SSA S  A
Sbjct: 1   MAENDGFDRDHLAVTAGTNFSQLLFAD--DDSSVVGLDVN-----QSFNFASSSAFS--A 60

Query: 61  IDNPPKMLCFGSKEEDEEHPQLGF----KSHQRSGHACSDSSSTSSGNGLKSDSKLK--- 120
            + PPKMLCFG+ + +E+   L F    ++ Q+SG  CSDSSSTSS N L  ++  K   
Sbjct: 61  AEKPPKMLCFGNYQYNED---LVFSDTTRTSQKSGVTCSDSSSTSSSNRLSVNTLSKPNK 120

Query: 121 RRNGSNPEM----SVIKEAPLLNQKASKKTKPDATCSAGHAKRKEKLGERITALQQLVSP 180
           +RNGS+ E     S +    + +QK SK+TK +   +   AKRKEKLGERI ALQQLVSP
Sbjct: 121 KRNGSDQESVQSTSAMTTYVMASQKTSKRTKTENPTTTIPAKRKEKLGERIAALQQLVSP 180

Query: 181 FGKTDTASVLHEAMGYIKFLHEQVQVLCSPYLQK-SQLLSSQSTSGRENGEIEGDLKSRG 240
           FGKTDTASVLHEAMGYIKFL +QVQVLCSPYLQ+ + L  S+     + G+   +L+SRG
Sbjct: 181 FGKTDTASVLHEAMGYIKFLQDQVQVLCSPYLQRLASLPESEGGENGDGGKARKELRSRG 240

Query: 241 LCLIPVDCSLHLADCTVADFWSPAMA 255
           LCL+PV+C++H+A+   ADFWSPAM+
Sbjct: 241 LCLVPVECTVHVANDNGADFWSPAMS 254

[Close]

BLAST of Cla016070 vs. NCBI nr
Match: gi|225429299|ref|XP_002269988.1| (PREDICTED: transcription factor bHLH113 isoform X3 [Vitis vinifera])

HSP 1 Score: 219.2 bits (557), Expect = 8.6e-54
Identity = 140/268 (52.24%), Postives = 172/268 (64.18%), Query Frame = 1


Query: 1   MAEKQSFTRDHPGPTTATSFSQLLFSSQHDDDDNDDIDKNHHLHHQIFDYSVSSASSPFA 60
           MA+ + F  DH    +  SFSQLLFS   DD    DID++       F YS S     F+
Sbjct: 1   MADSEGFGEDH---LSGGSFSQLLFS---DDVVGLDIDES-------FAYSPS-----FS 60

Query: 61  IDNPPKMLCFGSKEEDEEHPQLGF----KSHQRSGHACSDSSSTSSGNGL---KSDSKLK 120
            + PPKMLCFG  + +     +GF    K+ Q+SG  CSDSSS SS N     K+    K
Sbjct: 61  NEKPPKMLCFGGYQSE-----VGFAEPTKTPQKSGVTCSDSSSASSTNNTNINKASKSNK 120

Query: 121 RRNGSN----PEMSVIKEAPLLNQKASKKTKPDATCSAGHAK-RKEKLGERITALQQLVS 180
           +RNGS     P  S + +AP   Q+ SKKTK +   S GH K +KEKLGERITALQQLVS
Sbjct: 121 KRNGSGNMSVPTSSGLAKAPAGGQRNSKKTKSENPTSGGHVKVKKEKLGERITALQQLVS 180

Query: 181 PFGKTDTASVLHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSTSGRENGEIEG--DLKS 240
           PFGKTDTASVLHEAMGYI+FL +QVQVLCSPYLQ +   S+  + G ENGE +   DL+S
Sbjct: 181 PFGKTDTASVLHEAMGYIRFLQDQVQVLCSPYLQ-TLPSSAHMSEGGENGEEKSSKDLRS 240

Query: 241 RGLCLIPVDCSLHLADCTVADFWSPAMA 255
           RGLCL+PV+C+ H+A+   AD+WSPAMA
Sbjct: 241 RGLCLVPVECTEHVANNNGADYWSPAMA 244

The following BLAST results are available for this feature:

BLAST of Cla016070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BH113_ARATH	4.2e-32	40.55	Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1	[more]
BH123_ARATH	1.5e-26	50.82	Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1	[more]
BH110_ARATH	2.7e-23	34.01	Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2	[more]
BH112_ARATH	3.5e-23	49.61	Transcription factor bHLH112 OS=Arabidopsis thaliana GN=BHLH112 PE=2 SV=1	[more]
BH133_ARATH	1.3e-22	32.00	Transcription factor bHLH133 OS=Arabidopsis thaliana GN=BHLH133 PE=2 SV=1	[more]

BLAST of Cla016070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T3_CUCSA	4.7e-115	82.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071650 PE=4 SV=1	[more]
F6H6A3_VITVI	6.0e-54	52.24	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00210 PE=4 SV=...	[more]
V7BDR6_PHAVU	5.6e-52	46.98	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G041200g PE=4 SV=1	[more]
V7BAZ7_PHAVU	1.3e-51	47.48	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G041200g PE=4 SV=1	[more]
A0A0S3SM88_PHAAN	2.1e-51	49.61	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G046400 PE=...	[more]

BLAST of Cla016070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110014\|ref\|XP_008455002.1\|	7.2e-117	82.95	PREDICTED: transcription factor bHLH113 [Cucumis melo]	[more]
gi\|449438633\|ref\|XP_004137092.1\|	6.7e-115	82.69	PREDICTED: transcription factor bHLH113 [Cucumis sativus]	[more]
gi\|1009150070\|ref\|XP_015892818.1\|	6.4e-57	51.69	PREDICTED: transcription factor bHLH113 isoform X1 [Ziziphus jujuba]	[more]
gi\|1009150072\|ref\|XP_015892819.1\|	1.4e-56	51.50	PREDICTED: transcription factor bHLH113 isoform X2 [Ziziphus jujuba]	[more]
gi\|225429299\|ref\|XP_002269988.1\|	8.6e-54	52.24	PREDICTED: transcription factor bHLH113 isoform X3 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001228	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016070	Cla016070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 151..196 score: 1.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 140..189 score: 10
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 151..204 score: 6.02
None	No IPR available	PANTHER	PTHR16223	FAMILY NOT NAMED	coord: 49..255 score: 2.3
None	No IPR available	PANTHER	PTHR16223:SF17	BASIC HELIX-LOOP-HELIX (BHLH) DNA-BINDING SUPERFAMILY PROTEIN-RELATED	coord: 49..255 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla016070	Cla97C02G033490	Watermelon (97103) v2	wmwmbB317
Cla016070	Csa7G071650	Cucumber (Chinese Long) v2	cuwmB605
Cla016070	MELO3C018496	Melon (DHL92) v3.5.1	mewmB240
Cla016070	ClCG02G006520	Watermelon (Charleston Gray)	wcgwmB198
Cla016070	CSPI07G07130	Wild cucumber (PI 183967)	cpiwmB623
Cla016070	CmaCh19G005710	Cucurbita maxima (Rimu)	cmawmB503
Cla016070	CmoCh19G005850	Cucurbita moschata (Rifu)	cmowmB496
Cla016070	Lsi03G005490	Bottle gourd (USVL1VR-Ls)	lsiwmB268
Cla016070	Cp4.1LG15g04460	Cucurbita pepo (Zucchini)	cpewmB268
Cla016070	CsGy7G006700	Cucumber (Gy14) v2	cgybwmB567
Cla016070	MELO3C018496.2	Melon (DHL92) v3.6.1	medwmB232
Cla016070	Carg16352	Silver-seed gourd	carwmB0455
Cla016070	CsaV3_7G008090	Cucumber (Chinese Long) v3	cucwmB635
Cla016070	Bhi05G000990	Wax gourd	wgowmB273

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016070	Melon (DHL92) v3.6.1	medwmB472
Cla016070	Silver-seed gourd	carwmB0179
Cla016070	Silver-seed gourd	carwmB0289
Cla016070	Silver-seed gourd	carwmB0375
Cla016070	Cucumber (Chinese Long) v3	cucwmB279
Cla016070	Watermelon (97103) v2	wmwmbB343
Cla016070	Wax gourd	wgowmB233
Cla016070	Watermelon (97103) v1	wmwmB131
Cla016070	Cucumber (Gy14) v1	cgywmB427
Cla016070	Cucurbita maxima (Rimu)	cmawmB127
Cla016070	Cucurbita maxima (Rimu)	cmawmB324
Cla016070	Cucurbita maxima (Rimu)	cmawmB725
Cla016070	Cucurbita moschata (Rifu)	cmowmB109
Cla016070	Cucurbita moschata (Rifu)	cmowmB721
Cla016070	Watermelon (Charleston Gray)	wcgwmB305
Cla016070	Cucumber (Chinese Long) v2	cuwmB270
Cla016070	Cucurbita pepo (Zucchini)	cpewmB453
Cla016070	Cucurbita pepo (Zucchini)	cpewmB665
Cla016070	Bottle gourd (USVL1VR-Ls)	lsiwmB380
Cla016070	Cucumber (Gy14) v2	cgybwmB253