Carg16352 (gene) Silver-seed gourd

Overview
NameCarg16352
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptiontranscription factor bHLH113
LocationCucurbita_argyrosperma_scaffold_088 : 437316 .. 438268 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAAAATCAATCCTCTGGTCGGGACCCAAAAACAGCAGCAGCTACCACTTTTTCTCAGCTTCTATTCTCTGCAGATCATGATGAAGATGATGATATCGATGTTGATAAACACCATCATGTTCATCACCAAATCTTTGAGTACTCTGTTTCTTCATCATTCGCCATTGAAAACCCCCCTAAGATGCTCTGTTTCGGCACCAAACAAGAGCAAGAACATCCCCAGCTGGGACTTAGATCAGCCCACGCATGCAGCGATTCCGTAAAGAGAAAAAATGGATCAAACCCAGAAACAACCGCCATTAAACCAGCTCCATTGTCGAACCAGAAAGCTTCAAAAAAGACCAAACCTGAAGCTCCCTGTTCTGCCGGACATGCAAAGGTCAGTCAGTTCTTGCGATGTTCTTGTTTTTTCTCTGTTTTTATAAAATGGGTTTTGTTTATTTGGTGATATTAGAGGAAGGAGAAGCTAGGAGAAAGAATCACAGCGCTACAACAATTGGTTTCGCCGTTCGGCAAGGTTGCAGAAAAAAAAAAACAGAGTATCTAATTTCATTACATTTTTGTCCATTTTCAAGAACTTGATATCAATTTTTGAATGTTGATGGCTTCAAAACAGACAGACACAGCTTCAGTTCTTCACGAGGCAATGGGTTACATCAAATTTTTACACGAACAAATTCAAGTCTTGTACAGTCCTTACCTGGACAAGAATCAGCTGGTAAGCACTCTGTTTCAAAAAAAAAAAAACAGAGCATTTTCCTGTTCTTCTTTGATTTTAAGCCATTTCTTCGCTTTGTTTCGCTGAAGGGAGGAGGAAATGGGGACACAGAGGGGGAGCTGAAAGGGAGAGGGCTGTGTTTGATTCCGGTGGAGTGTAGCTTGCATTTGGCGAACTGTACGGTAGCGGACTTTTGGTCGCCGGCGATGGCTATGGGGAGGAAGCTCTGA

mRNA sequence

ATGGCGGAAAATCAATCCTCTGGTCGGGACCCAAAAACAGCAGCAGCTACCACTTTTTCTCAGCTTCTATTCTCTGCAGATCATGATGAAGATGATGATATCGATGTTGATAAACACCATCATGTTCATCACCAAATCTTTGAGTACTCTGTTTCTTCATCATTCGCCATTGAAAACCCCCCTAAGATGCTCTGTTTCGGCACCAAACAAGAGCAAGAACATCCCCAGCTGGGACTTAGATCAGCCCACGCATGCAGCGATTCCGTAAAGAGAAAAAATGGATCAAACCCAGAAACAACCGCCATTAAACCAGCTCCATTGTCGAACCAGAAAGCTTCAAAAAAGACCAAACCTGAAGCTCCCTGTTCTGCCGGACATGCAAAGAGGAAGGAGAAGCTAGGAGAAAGAATCACAGCGCTACAACAATTGGTTTCGCCGTTCGGCAAGACAGACACAGCTTCAGTTCTTCACGAGGCAATGGGTTACATCAAATTTTTACACGAACAAATTCAAGTCTTGTACAGTCCTTACCTGGACAAGAATCAGCTGGGAGGAGGAAATGGGGACACAGAGGGGGAGCTGAAAGGGAGAGGGCTGTGTTTGATTCCGGTGGAGTGTAGCTTGCATTTGGCGAACTGTACGGTAGCGGACTTTTGGTCGCCGGCGATGGCTATGGGGAGGAAGCTCTGA

Coding sequence (CDS)

ATGGCGGAAAATCAATCCTCTGGTCGGGACCCAAAAACAGCAGCAGCTACCACTTTTTCTCAGCTTCTATTCTCTGCAGATCATGATGAAGATGATGATATCGATGTTGATAAACACCATCATGTTCATCACCAAATCTTTGAGTACTCTGTTTCTTCATCATTCGCCATTGAAAACCCCCCTAAGATGCTCTGTTTCGGCACCAAACAAGAGCAAGAACATCCCCAGCTGGGACTTAGATCAGCCCACGCATGCAGCGATTCCGTAAAGAGAAAAAATGGATCAAACCCAGAAACAACCGCCATTAAACCAGCTCCATTGTCGAACCAGAAAGCTTCAAAAAAGACCAAACCTGAAGCTCCCTGTTCTGCCGGACATGCAAAGAGGAAGGAGAAGCTAGGAGAAAGAATCACAGCGCTACAACAATTGGTTTCGCCGTTCGGCAAGACAGACACAGCTTCAGTTCTTCACGAGGCAATGGGTTACATCAAATTTTTACACGAACAAATTCAAGTCTTGTACAGTCCTTACCTGGACAAGAATCAGCTGGGAGGAGGAAATGGGGACACAGAGGGGGAGCTGAAAGGGAGAGGGCTGTGTTTGATTCCGGTGGAGTGTAGCTTGCATTTGGCGAACTGTACGGTAGCGGACTTTTGGTCGCCGGCGATGGCTATGGGGAGGAAGCTCTGA

Protein sequence

MAENQSSGRDPKTAAATTFSQLLFSADHDEDDDIDVDKHHHVHHQIFEYSVSSSFAIENPPKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEAPCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDKNQLGGGNGDTEGELKGRGLCLIPVECSLHLANCTVADFWSPAMAMGRKL
Homology
[Close]
BLAST of Carg16352 vs. NCBI nr
Match: XP_022952658.1 (transcription factor bHLH113 isoform X2 [Cucurbita moschata])

HSP 1 Score: 419.9 bits (1078), Expect = 5.7e-114
Identity = 226/229 (98.69%), Postives = 227/229 (99.13%), Query Frame = 0 

Query: 1   MAENQSSGRDPKTAAATTFSQLLFSADXXXXXXXXXXXXXXXXXQIFEYSVSSSFAIENP 60
           MAENQSSGRDPKTAAATTFSQLLFSA+ XXXXXXXXXXXXXXX QIFEYSVSSSFAIENP
Sbjct: 1   MAENQSSGRDPKTAAATTFSQLLFSANHXXXXXXXXXXXXXXXHQIFEYSVSSSFAIENP 60

Query: 61  PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA 120
           PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA
Sbjct: 61  PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA 120

Query: 121 PCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK 180
           PCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK
Sbjct: 121 PCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK 180

Query: 181 NQLGGGNGDTEGELKGRGLCLIPVECSLHLANCTVADFWSPAMAMGRKL 230
           NQLGGGNGDTEGELKGRGLCLIPVECSLHLANCTVADFWSPAMAMGRKL
Sbjct: 181 NQLGGGNGDTEGELKGRGLCLIPVECSLHLANCTVADFWSPAMAMGRKL 229

[Close]
BLAST of Carg16352 vs. NCBI nr
Match: XP_023553845.1 (transcription factor bHLH113 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 416.8 bits (1070), Expect = 4.9e-113
Identity = 225/229 (98.25%), Postives = 227/229 (99.13%), Query Frame = 0 

Query: 1   MAENQSSGRDPKTAAATTFSQLLFSADXXXXXXXXXXXXXXXXXQIFEYSVSSSFAIENP 60
           MAENQSSGRDPKTAAATTFSQLLF AD XXXXXXXXXXXXXXXXQIFEYSVSSSFAIENP
Sbjct: 1   MAENQSSGRDPKTAAATTFSQLLFFADHXXXXXXXXXXXXXXXXQIFEYSVSSSFAIENP 60

Query: 61  PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA 120
           PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA
Sbjct: 61  PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA 120

Query: 121 PCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK 180
           PCSAGHAK+KEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK
Sbjct: 121 PCSAGHAKKKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK 180

Query: 181 NQLGGGNGDTEGELKGRGLCLIPVECSLHLANCTVADFWSPAMAMGRKL 230
           NQLGGGNG+TEGELKGRGLCLIPVECSLHLANCTVADFWSPAMAMGRKL
Sbjct: 181 NQLGGGNGETEGELKGRGLCLIPVECSLHLANCTVADFWSPAMAMGRKL 229

[Close]
BLAST of Carg16352 vs. NCBI nr
Match: XP_022972439.1 (transcription factor bHLH113 isoform X1 [Cucurbita maxima])

HSP 1 Score: 416.4 bits (1069), Expect = 6.3e-113
Identity = 209/229 (91.27%), Postives = 211/229 (92.14%), Query Frame = 0 

Query: 1   MAENQSSGRDPKTAAATTFSQLLFSADXXXXXXXXXXXXXXXXXQIFEYSVSSSFAIENP 60
           MAENQSSGRDPKTAAATTFSQLLFSAD                 QIFEYSVSSSFAIENP
Sbjct: 112 MAENQSSGRDPKTAAATTFSQLLFSADHDEYDEIDVDKHHHVHHQIFEYSVSSSFAIENP 171

Query: 61  PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA 120
           PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA
Sbjct: 172 PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA 231

Query: 121 PCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK 180
           PCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK
Sbjct: 232 PCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK 291

Query: 181 NQLGGGNGDTEGELKGRGLCLIPVECSLHLANCTVADFWSPAMAMGRKL 230
           NQLG GNG+TEGE+KGRGLCLIPVECSLHLANCTVADFWSPAMAMGRKL
Sbjct: 292 NQLGRGNGETEGEMKGRGLCLIPVECSLHLANCTVADFWSPAMAMGRKL 340

[Close]
BLAST of Carg16352 vs. NCBI nr
Match: XP_022972440.1 (transcription factor bHLH113 isoform X2 [Cucurbita maxima])

HSP 1 Score: 408.7 bits (1049), Expect = 1.3e-110
Identity = 209/238 (87.82%), Postives = 211/238 (88.66%), Query Frame = 0 

Query: 1   MAENQSSGRDPKTAAATTFSQLLFSADXXXXXXXXXXXXXXXXXQIFEYSVSSSFAIENP 60
           MAENQSSGRDPKTAAATTFSQLLFSAD                 QIFEYSVSSSFAIENP
Sbjct: 112 MAENQSSGRDPKTAAATTFSQLLFSADHDEYDEIDVDKHHHVHHQIFEYSVSSSFAIENP 171

Query: 61  PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA 120
           PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA
Sbjct: 172 PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA 231

Query: 121 PCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK 180
           PCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK
Sbjct: 232 PCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK 291

Query: 181 NQL---------GGGNGDTEGELKGRGLCLIPVECSLHLANCTVADFWSPAMAMGRKL 230
           NQL         G GNG+TEGE+KGRGLCLIPVECSLHLANCTVADFWSPAMAMGRKL
Sbjct: 292 NQLVSTLFQKTEGRGNGETEGEMKGRGLCLIPVECSLHLANCTVADFWSPAMAMGRKL 349

[Close]
BLAST of Carg16352 vs. NCBI nr
Match: XP_022952657.1 (transcription factor bHLH113 isoform X1 [Cucurbita moschata])

HSP 1 Score: 404.4 bits (1038), Expect = 2.5e-109
Identity = 226/258 (87.60%), Postives = 227/258 (87.98%), Query Frame = 0 

Query: 1   MAENQSSGRDPKTAAATTFSQLLFSADXXXXXXXXXXXXXXXXXQIFEYSVSSSFAIENP 60
           MAENQSSGRDPKTAAATTFSQLLFSA+ XXXXXXXXXXXXXXX QIFEYSVSSSFAIENP
Sbjct: 1   MAENQSSGRDPKTAAATTFSQLLFSANHXXXXXXXXXXXXXXXHQIFEYSVSSSFAIENP 60

Query: 61  PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA 120
           PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA
Sbjct: 61  PKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNGSNPETTAIKPAPLSNQKASKKTKPEA 120

Query: 121 PCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK 180
           PCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK
Sbjct: 121 PCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDK 180

Query: 181 NQL-----------------------------GGGNGDTEGELKGRGLCLIPVECSLHLA 230
           NQL                             GGGNGDTEGELKGRGLCLIPVECSLHLA
Sbjct: 181 NQLVSTLFQKKKQSIFLFFFDFKPFLRFVSLKGGGNGDTEGELKGRGLCLIPVECSLHLA 240

[Close]
BLAST of Carg16352 vs. TAIR10
Match: AT3G19500.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 129.0 bits (323), Expect = 3.7e-30
Identity = 98/253 (38.74%), Postives = 124/253 (49.01%), Query Frame = 0 

Query: 2   AENQSSGRDPKTAAATTFSQLLFSADXXXXXXXXXXXXXXXXXQIFEYSVSSSFAIENPP 61
           AE+Q      +    T+FS+LL  +D                    E S+   F+ +   
Sbjct: 5   AEDQDDRAMMEAEGVTSFSELLMFSDGVLSSSSDHQPEGNVGDG-GEDSLGFVFSGKTGS 64

Query: 62  KMLCFGTKQEQEHPQLGL----------------------RSAHACSDSVKRKNGSNPET 121
           +MLCF    + +   L L                       S  AC+     K+ +   T
Sbjct: 65  RMLCFSGGYQNDDESLFLEPSVPTSGVSDLDPSCIKIDCRNSNDACTVDKSTKSSTKKRT 124

Query: 122 -TAIKPAPLSNQKASKKTK-PEAPCSAGHAK-RKEKLGERITALQQLVSPFGKTDTASVL 181
            T        N+K  KK K  +   S G AK RKE+LGERI ALQQLVSP+GKTD ASVL
Sbjct: 125 GTGNGQESDQNRKPGKKGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVL 184

Query: 182 HEAMGYIKFLHEQIQVLYSPYLDKNQLGGG--NGDTEG-----ELKGRGLCLIPVECSLH 223
           HEAMGYIKFL +QIQVL SPYL  + L GG   GD        +L+ RGLCL+PV  ++H
Sbjct: 185 HEAMGYIKFLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVPVSSTVH 244

[Close]
BLAST of Carg16352 vs. TAIR10
Match: AT1G49830.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 115.5 bits (288), Expect = 4.2e-26
Identity = 77/198 (38.89%), Postives = 111/198 (56.06%), Query Frame = 0 

Query: 45  QIFEYSVSSSFAIENPPKMLCFGTKQEQEHPQLGLRSAHACSDSVKRKNG---------- 104
           ++ E S    F   + P+MLCFG   + +   L  + + + +  +  +N           
Sbjct: 29  EVEEDSFGFRFTGNDAPQMLCFGGGNQNDTDLLFSQPSFSPASPLSSRNNACVVNDQSFR 88

Query: 105 SNPET-TAIKPAPLSNQKASKKTK-PEAPCSAGHAK-RKEKLGERITALQQLVSPFGKTD 164
           SN +T +A     + + K  K+ K  +   S G+AK +KEK+GE+IT LQ LVSP+GKTD
Sbjct: 89  SNKKTGSADGHDRVCDPKPGKRCKRDQKKSSLGNAKVKKEKVGEKITTLQHLVSPYGKTD 148

Query: 165 TASVLHEAMGYIKFLHEQIQVLYSPY-----LDKNQLGGGNGDTE-GELKGRGLCLIPVE 224
            ASVLHE MGYIKFL +Q+QVL +PY     LD    G  N   +  EL+  GLCL+P+ 
Sbjct: 149 AASVLHETMGYIKFLQDQVQVLSTPYFKHNPLDDEDTGEVNPTMKVKELRSNGLCLVPLA 208

[Close]
BLAST of Carg16352 vs. TAIR10
Match: AT3G20640.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 108.6 bits (270), Expect = 5.1e-24
Identity = 67/159 (42.14%), Postives = 89/159 (55.97%), Query Frame = 0 

Query: 75  PQLGLRSAHACSDSVKRKNGS---NPETTAIKPAPLSNQKASKKTKPEAPCSAGHAKRKE 134
           P L     H  S   + KN S   +  +  +K     +Q A+K+ K EA   +   KRKE
Sbjct: 289 PALQPPQIHPQSFDEQPKNISEIRDSSSNEVKRGGNDHQPAAKRAKSEAASPSPAFKRKE 348

Query: 135 KLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDKN-QLGGGNGD- 194
           K+G+RI ALQQLVSPFGKTD ASVL EA+ YIKFLH+Q+  L +PY+     L     D 
Sbjct: 349 KMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALSNPYMKSGASLQHQQSDH 408

Query: 195 -------TEGELKGRGLCLIPVECSLHLANCTVADFWSP 222
                   E +L+ RGLCL+PV  +  + + T  DFW+P
Sbjct: 409 STELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTP 447

[Close]
BLAST of Carg16352 vs. TAIR10
Match: AT1G61660.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-23
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 0 

Query: 109 NQKASKKTKPEAPCSAGHAK-RKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLH 168
           N+ A+KK +   P      K RKE L ++IT+LQQLVSPFGKTDTASVL EA+ YIKFLH
Sbjct: 261 NESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLH 320

Query: 169 EQIQVLYSPYLDK---NQ--------LGGGNGDTEGELKGRGLCLIPVECSLHLANCTVA 222
           +Q+ VL +PY+ +   NQ                  EL+G GLCL+P+  +  +AN T A
Sbjct: 321 DQVTVLSTPYMKQGASNQQXXXXXXXXXXXXXXXXXELRGHGLCLVPISSTFPVANETTA 380

[Close]
BLAST of Carg16352 vs. TAIR10
Match: AT2G20100.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 8.2e-22
Identity = 61/154 (39.61%), Postives = 77/154 (50.00%), Query Frame = 0 

Query: 112 ASKKTKPEAPCSAGHAK-RKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQI 171
           A+KK K + P S    K RKEKLG RI +L QLVSPFGKTDTASVL EA+GYI+FLH QI
Sbjct: 203 ANKKPKLQVPSSQSTLKVRKEKLGGRIASLHQLVSPFGKTDTASVLSEAIGYIRFLHSQI 262

Query: 172 QVLYSPYL------------------------------------------DKNQLGGGNG 223
           + L  PY                                             NQ    N 
Sbjct: 263 EALSLPYFGTPSRNNMMHQHAQRNMNGIFPEDPGQLVNEYCMKRGVSLSSTDNQKSNPNE 322

[Close]
BLAST of Carg16352 vs. Swiss-Prot
Match: sp|Q9LT67|BH113_ARATH (Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.6e-29
Identity = 98/253 (38.74%), Postives = 124/253 (49.01%), Query Frame = 0 

Query: 2   AENQSSGRDPKTAAATTFSQLLFSADXXXXXXXXXXXXXXXXXQIFEYSVSSSFAIENPP 61
           AE+Q      +    T+FS+LL  +D                    E S+   F+ +   
Sbjct: 5   AEDQDDRAMMEAEGVTSFSELLMFSDGVLSSSSDHQPEGNVGDG-GEDSLGFVFSGKTGS 64

Query: 62  KMLCFGTKQEQEHPQLGL----------------------RSAHACSDSVKRKNGSNPET 121
           +MLCF    + +   L L                       S  AC+     K+ +   T
Sbjct: 65  RMLCFSGGYQNDDESLFLEPSVPTSGVSDLDPSCIKIDCRNSNDACTVDKSTKSSTKKRT 124

Query: 122 -TAIKPAPLSNQKASKKTK-PEAPCSAGHAK-RKEKLGERITALQQLVSPFGKTDTASVL 181
            T        N+K  KK K  +   S G AK RKE+LGERI ALQQLVSP+GKTD ASVL
Sbjct: 125 GTGNGQESDQNRKPGKKGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVL 184

Query: 182 HEAMGYIKFLHEQIQVLYSPYLDKNQLGGG--NGDTEG-----ELKGRGLCLIPVECSLH 223
           HEAMGYIKFL +QIQVL SPYL  + L GG   GD        +L+ RGLCL+PV  ++H
Sbjct: 185 HEAMGYIKFLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVPVSSTVH 244

[Close]
BLAST of Carg16352 vs. Swiss-Prot
Match: sp|Q8GXT3|BH123_ARATH (Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.2e-23
Identity = 67/159 (42.14%), Postives = 89/159 (55.97%), Query Frame = 0 

Query: 75  PQLGLRSAHACSDSVKRKNGS---NPETTAIKPAPLSNQKASKKTKPEAPCSAGHAKRKE 134
           P L     H  S   + KN S   +  +  +K     +Q A+K+ K EA   +   KRKE
Sbjct: 289 PALQPPQIHPQSFDEQPKNISEIRDSSSNEVKRGGNDHQPAAKRAKSEAASPSPAFKRKE 348

Query: 135 KLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDKN-QLGGGNGD- 194
           K+G+RI ALQQLVSPFGKTD ASVL EA+ YIKFLH+Q+  L +PY+     L     D 
Sbjct: 349 KMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALSNPYMKSGASLQHQQSDH 408

Query: 195 -------TEGELKGRGLCLIPVECSLHLANCTVADFWSP 222
                   E +L+ RGLCL+PV  +  + + T  DFW+P
Sbjct: 409 STELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTP 447

[Close]
BLAST of Carg16352 vs. Swiss-Prot
Match: sp|Q94JL3|BH112_ARATH (Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.6e-22
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 0 

Query: 109 NQKASKKTKPEAPCSAGHAK-RKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLH 168
           N+ A+KK +   P      K RKE L ++IT+LQQLVSPFGKTDTASVL EA+ YIKFLH
Sbjct: 261 NESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLH 320

Query: 169 EQIQVLYSPYLDK---NQ--------LGGGNGDTEGELKGRGLCLIPVECSLHLANCTVA 222
           +Q+ VL +PY+ +   NQ                  EL+G GLCL+P+  +  +AN T A
Sbjct: 321 DQVTVLSTPYMKQGASNQQXXXXXXXXXXXXXXXXXELRGHGLCLVPISSTFPVANETTA 380

[Close]
BLAST of Carg16352 vs. Swiss-Prot
Match: sp|Q7XJU2|BH153_ARATH (Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.3e-21
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 0 

Query: 128 KRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQIQVLYSPYLDKNQLGGGN 187
           +RK+K+GERI+ALQQ+VSP+GKTDTASVL +AM YI+FLHEQ++VL +PYL         
Sbjct: 38  ERKDKVGERISALQQIVSPYGKTDTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQE 97

Query: 188 GDTEGELKGRGLCLIPVECSLHLANCTVADFWSP 222
              +  L+ RGLCL+P+E ++ +A    AD W+P
Sbjct: 98  ELEQYSLRNRGLCLVPMENTVGVAQSNGADIWAP 131

[Close]
BLAST of Carg16352 vs. Swiss-Prot
Match: sp|Q7XHI5|BH133_ARATH (Transcription factor bHLH133 OS=Arabidopsis thaliana OX=3702 GN=BHLH133 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 61/154 (39.61%), Postives = 77/154 (50.00%), Query Frame = 0 

Query: 112 ASKKTKPEAPCSAGHAK-RKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQI 171
           A+KK K + P S    K RKEKLG RI +L QLVSPFGKTDTASVL EA+GYI+FLH QI
Sbjct: 203 ANKKPKLQVPSSQSTLKVRKEKLGGRIASLHQLVSPFGKTDTASVLSEAIGYIRFLHSQI 262

Query: 172 QVLYSPYL------------------------------------------DKNQLGGGNG 223
           + L  PY                                             NQ    N 
Sbjct: 263 EALSLPYFGTPSRNNMMHQHAQRNMNGIFPEDPGQLVNEYCMKRGVSLSSTDNQKSNPNE 322

[Close]
BLAST of Carg16352 vs. TrEMBL
Match: tr|A0A1S3BZZ3|A0A1S3BZZ3_CUCME (transcription factor bHLH113 OS=Cucumis melo OX=3656 GN=LOC103495283 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.4e-68
Identity = 173/257 (67.32%), Postives = 185/257 (71.98%), Query Frame = 0 

Query: 1   MAENQS-SGRDPKTAAATTFSQLLFSA--DXXXXXXXXXXXXXXXXXQIFEYSVSSSFAI 60
           MAENQS +G   +   ATTFSQLLFS   DXXXXXXXXXXXXXXXXX           AI
Sbjct: 1   MAENQSFAGDHLRPTTATTFSQLLFSPHHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXAI 60

Query: 61  ENPPKMLCFGTKQE-QEHPQLGLRSAH------------------ACSDSVKRKNGSNPE 120
           +NPPKMLCFGTK+E QEHPQLG +S                             NGSNPE
Sbjct: 61  DNPPKMLCFGTKEEDQEHPQLGFKSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXNGSNPE 120

Query: 121 TTAIKPAPLSNQKASKKTKPEAPCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHE 180
           T AIK       +ASKKTKPEAPCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHE
Sbjct: 121 TAAIK-------EASKKTKPEAPCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHE 180

Query: 181 AMGYIKFLHEQIQVLYSPYLDKNQL-------GGGNGDTEGELKGRGLCLIPVECSLHLA 229
           AMGYIKFLHEQ+QVL SPYL K+QL       G  NG+TEG+LK RGLCLIPV+CSLHLA
Sbjct: 181 AMGYIKFLHEQVQVLCSPYLQKSQLLSSQSATGKENGETEGDLKSRGLCLIPVDCSLHLA 240

[Close]
BLAST of Carg16352 vs. TrEMBL
Match: tr|A0A0A0K7T3|A0A0A0K7T3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071650 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.9e-66
Identity = 170/260 (65.38%), Postives = 183/260 (70.38%), Query Frame = 0 

Query: 1   MAENQS-SGRDPKTAAATTFSQLLFS-----ADXXXXXXXXXXXXXXXXXQIFEYSVSSS 60
           MAENQS +G   +   ATTFSQLLFS       XXXXXXXXXXXXXXXXX          
Sbjct: 1   MAENQSFTGDHLRPTTATTFSQLLFSPHHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  FAIENPPKMLCFGTKQE-QEHPQLGLRSAH------------------ACSDSVKRKNGS 120
             I+NPPKMLCFGTK+E QEHPQLG +S                            +NGS
Sbjct: 61  XXIDNPPKMLCFGTKEEDQEHPQLGFKSRQXXXXXXXXXXXXXXXXXXXXXXXXXXRNGS 120

Query: 121 NPETTAIKPAPLSNQKASKKTKPEAPCSAGHAKRKEKLGERITALQQLVSPFGKTDTASV 180
           NPE  AIK       +ASKKTKPEAPCSAGHAKRKEKLGERITALQQLVSPFGKTDTASV
Sbjct: 121 NPEMAAIK-------EASKKTKPEAPCSAGHAKRKEKLGERITALQQLVSPFGKTDTASV 180

Query: 181 LHEAMGYIKFLHEQIQVLYSPYLDKNQL-------GGGNGDTEGELKGRGLCLIPVECSL 229
           LHEAMGYIKFLHEQ+QVL SPYL K+QL       G GN +TEG+LK RGLCLIPV+CSL
Sbjct: 181 LHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSATGRGNEETEGDLKSRGLCLIPVDCSL 240

[Close]
BLAST of Carg16352 vs. TrEMBL
Match: tr|A0A2I4DQH7|A0A2I4DQH7_9ROSI (transcription factor bHLH113 OS=Juglans regia OX=51240 GN=LOC108982467 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.0e-43
Identity = 124/268 (46.27%), Postives = 149/268 (55.60%), Query Frame = 0 

Query: 1   MAENQSSGRDPKTAAATTFSQLLFSADXXXXXXXXXXXXXXXXXQIFEYSVSSSFAIENP 60
           MA N+  G D  T    +FSQLL + D                 +   YSV SS     P
Sbjct: 1   MAGNEGFGGDHLT-GEISFSQLLLADD------DGDVAVGLDVDRSLNYSVFSS---GKP 60

Query: 61  PKMLCFGTKQEQE----HPQ---LGLRSAHACSDS------------------VKRKNGS 120
           PKMLCFG   +QE    +P+      +S   CSDS                  VK++ GS
Sbjct: 61  PKMLCFGNCDQQEAELVYPETTRTPKKSGVTCSDSSLASSSNNGSINTLSKSFVKKRIGS 120

Query: 121 NPE----TTAIKPAPLSNQKASKKTKPEAPCSAGHAKRKEKLGERITALQQLVSPFGKTD 180
             E    T  I PA  + Q+ SKK K E P   GHAKRKEKLGER+ ALQQLVSPFGKTD
Sbjct: 121 GQESVQCTNTITPAVATGQRTSKKKKMENPTPVGHAKRKEKLGERVAALQQLVSPFGKTD 180

Query: 181 TASVLHEAMGYIKFLHEQIQVLYSPYLDKNQLG---------GGNG-DTEGELKGRGLCL 230
           TASVLHEAMGYI+FLH+Q+QVL SPYL + +           G NG +   +L+ RGLCL
Sbjct: 181 TASVLHEAMGYIRFLHDQVQVLCSPYLQRLRSSPELRPLPDDGENGEEARKDLRSRGLCL 240

[Close]
BLAST of Carg16352 vs. TrEMBL
Match: tr|F6H6A3|F6H6A3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0091g00210 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.6e-42
Identity = 116/258 (44.96%), Postives = 143/258 (55.43%), Query Frame = 0 

Query: 1   MAENQSSGRDPKTAAATTFSQLLFSADXXXXXXXXXXXXXXXXXQIFEYSVSSSFAIENP 60
           MA+++  G D  +    +FSQLLFS D                     ++ S SF+ E P
Sbjct: 1   MADSEGFGEDHLSGG--SFSQLLFSDDVVGLDIDE------------SFAYSPSFSNEKP 60

Query: 61  PKMLCFGTKQEQ----EHPQLGLRSAHACSDSVKRK---------------------NGS 120
           PKMLCFG  Q +    E  +   +S   CSD                          N S
Sbjct: 61  PKMLCFGGYQSEVGFAEPTKTPQKSGVTCSDXXXXXXXXXXXXXXXXXXXXXXXGSGNMS 120

Query: 121 NPETTAIKPAPLSNQKASKKTKPEAPCSAGHAK-RKEKLGERITALQQLVSPFGKTDTAS 180
            P ++ +  AP   Q+ SKKTK E P S GH K +KEKLGERITALQQLVSPFGKTDTAS
Sbjct: 121 VPTSSGLAKAPAGGQRNSKKTKSENPTSGGHVKVKKEKLGERITALQQLVSPFGKTDTAS 180

Query: 181 VLHEAMGYIKFLHEQIQVLYSPYLD------KNQLGGGNGDTEG--ELKGRGLCLIPVEC 225
           VLHEAMGYI+FL +Q+QVL SPYL           GG NG+ +   +L+ RGLCL+PVEC
Sbjct: 181 VLHEAMGYIRFLQDQVQVLCSPYLQTLPSSAHMSEGGENGEEKSSKDLRSRGLCLVPVEC 240

[Close]
BLAST of Carg16352 vs. TrEMBL
Match: tr|M5W0G2|M5W0G2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G136800 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 116/257 (45.14%), Postives = 143/257 (55.64%), Query Frame = 0 

Query: 1   MAENQS-SGRDPKTAAATTFSQLLFSADXXXXXXXXXXXXXXXXXQIFEYSVSSSFAIE- 60
           MAEN    G        T+FSQLLF+AD                 + F Y+ SS+++ + 
Sbjct: 1   MAENDGLEGDHLAVTEGTSFSQLLFAAD--------EGCGLGMDDETFNYTHSSAYSTQI 60

Query: 61  NPPKMLCFGTKQEQEHPQLGL-------RSAHACSDSV------------------KRKN 120
            PPKMLCFG         L +       +S   CSDS                   KR+N
Sbjct: 61  KPPKMLCFGNYDHSHGDGLEIGFSETAKKSGVTCSDSSSVYSTSNTIINALPESNNKRRN 120

Query: 121 GSNPET----TAIKPAPLSNQKASKKTKPEAPCSAGHAKRKEKLGERITALQQLVSPFGK 180
           G   E+    + I       Q+ SKKTK E P S G+AKRKEKLGERI ALQQLVSPFGK
Sbjct: 121 GLGQESVQCASTISTTTXXXQRTSKKTKSENPTSTGNAKRKEKLGERIAALQQLVSPFGK 180

Query: 181 TDTASVLHEAMGYIKFLHEQIQVLYSPYLDK--NQLGGGNGDTEGELKGRGLCLIPVECS 225
           TDTASVLHEAMGYI+FLH+Q+QVL SPYL +  +   G   +   +L+ RGLCL PVE +
Sbjct: 181 TDTASVLHEAMGYIRFLHDQVQVLCSPYLQRLPSLPDGEMEEARKDLRSRGLCLAPVEYT 240

The following BLAST results are available for this feature:
BLAST of Carg16352 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952658.15.7e-11498.69transcription factor bHLH113 isoform X2 [Cucurbita moschata][more]
XP_023553845.14.9e-11398.25transcription factor bHLH113 [Cucurbita pepo subsp. pepo][more]
XP_022972439.16.3e-11391.27transcription factor bHLH113 isoform X1 [Cucurbita maxima][more]
XP_022972440.11.3e-11087.82transcription factor bHLH113 isoform X2 [Cucurbita maxima][more]
XP_022952657.12.5e-10987.60transcription factor bHLH113 isoform X1 [Cucurbita moschata][more]
BLAST of Carg16352 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19500.13.7e-3038.74basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G49830.14.2e-2638.89basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G20640.15.1e-2442.14basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G61660.12.5e-2348.00basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT2G20100.18.2e-2239.61basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of Carg16352 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LT67|BH113_ARATH6.6e-2938.74Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=... [more]
sp|Q8GXT3|BH123_ARATH9.2e-2342.14Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=... [more]
sp|Q94JL3|BH112_ARATH4.6e-2248.00Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=... [more]
sp|Q7XJU2|BH153_ARATH2.3e-2153.19Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=... [more]
sp|Q7XHI5|BH133_ARATH1.5e-2039.61Transcription factor bHLH133 OS=Arabidopsis thaliana OX=3702 GN=BHLH133 PE=1 SV=... [more]
BLAST of Carg16352 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BZZ3|A0A1S3BZZ3_CUCME2.4e-6867.32transcription factor bHLH113 OS=Cucumis melo OX=3656 GN=LOC103495283 PE=4 SV=1[more]
tr|A0A0A0K7T3|A0A0A0K7T3_CUCSA2.9e-6665.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071650 PE=4 SV=1[more]
tr|A0A2I4DQH7|A0A2I4DQH7_9ROSI6.0e-4346.27transcription factor bHLH113 OS=Juglans regia OX=51240 GN=LOC108982467 PE=4 SV=1[more]
tr|F6H6A3|F6H6A3_VITVI8.6e-4244.96Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0091g00210 PE=4 SV=... [more]
tr|M5W0G2|M5W0G2_PRUPE1.5e-4145.14Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G136800 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR036638HLH_DNA-bd_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16352-RACarg16352-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3DG3DSA:4.10.280.10coord: 107..179
e-value: 2.0E-5
score: 26.4
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILYSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 128..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..116
NoneNo IPR availablePANTHERPTHR16223:SF21SUBFAMILY NOT NAMEDcoord: 91..223
NoneNo IPR availablePANTHERPTHR16223FAMILY NOT NAMEDcoord: 91..223
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 117..166
score: 10.88
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainCDDcd00083HLHcoord: 128..171
e-value: 2.6447E-5
score: 39.5047

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16352Cla016070Watermelon (97103) v1carwmB0455
Carg16352Csa7G071650Cucumber (Chinese Long) v2carcuB0487
Carg16352MELO3C018496Melon (DHL92) v3.5.1carmeB0460
Carg16352ClCG02G006520Watermelon (Charleston Gray)carwcgB0445
Carg16352CSPI07G07130Wild cucumber (PI 183967)carcpiB0493
Carg16352CmaCh19G005710Cucurbita maxima (Rimu)carcmaB0632
Carg16352CmoCh19G005850Cucurbita moschata (Rifu)carcmoB0615
Carg16352Lsi03G005490Bottle gourd (USVL1VR-Ls)carlsiB411
Carg16352Cp4.1LG15g04460Cucurbita pepo (Zucchini)carcpeB0637
Carg16352CsGy7G006700Cucumber (Gy14) v2carcgybB0464
Carg16352MELO3C018496.2Melon (DHL92) v3.6.1carmedB0463
Carg16352CsaV3_7G008090Cucumber (Chinese Long) v3carcucB0490
Carg16352Cla97C02G033490Watermelon (97103) v2carwmbB0477
Carg16352Bhi05G000990Wax gourdcarwgoB0549
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg16352Wax gourdcarwgoB0552
Carg16352Wax gourdcarwgoB0555
Carg16352Silver-seed gourdcarcarB228
Carg16352Silver-seed gourdcarcarB402
Carg16352Cucumber (Gy14) v1carcgyB0524
Carg16352Cucurbita maxima (Rimu)carcmaB0630
Carg16352Cucurbita maxima (Rimu)carcmaB0634
Carg16352Cucurbita moschata (Rifu)carcmoB0612
Carg16352Cucurbita moschata (Rifu)carcmoB0616
Carg16352Cucurbita pepo (Zucchini)carcpeB0639
Carg16352Bottle gourd (USVL1VR-Ls)carlsiB414
Carg16352Watermelon (97103) v2carwmbB0478
Carg16352Watermelon (97103) v2carwmbB0480