Cla015869 (gene) Watermelon (97103) v1

Overview
NameCla015869
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionAuxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein
LocationChr2 : 4253824 .. 4254075 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTCCGTTTAAACAGCCCAAGGAAATCATCATCGACTGTACCAAAGGGGTTTTTCGCCGTCTACGTTGGAGAGACACAAAAGAGACGACATGTGATTCCGATTTCTTACTTGAAGCATCCATCGTTTCAAGATTTGTTGAGTAAAGCTGAAGAAGAGTTTGGATTCGATCATCCAATGGGGGGCTTAACGATCCCTTGCAATGAAGATGTGTTCTTCGAAGTCACTTCTCGCTTGGCTAATTGTTGA

mRNA sequence

ATGGGATTCCGTTTAAACAGCCCAAGGAAATCATCATCGACTGTACCAAAGGGGTTTTTCGCCGTCTACGTTGGAGAGACACAAAAGAGACGACATGTGATTCCGATTTCTTACTTGAAGCATCCATCGTTTCAAGATTTGTTGAGTAAAGCTGAAGAAGAGTTTGGATTCGATCATCCAATGGGGGGCTTAACGATCCCTTGCAATGAAGATGTGTTCTTCGAAGTCACTTCTCGCTTGGCTAATTGTTGA

Coding sequence (CDS)

ATGGGATTCCGTTTAAACAGCCCAAGGAAATCATCATCGACTGTACCAAAGGGGTTTTTCGCCGTCTACGTTGGAGAGACACAAAAGAGACGACATGTGATTCCGATTTCTTACTTGAAGCATCCATCGTTTCAAGATTTGTTGAGTAAAGCTGAAGAAGAGTTTGGATTCGATCATCCAATGGGGGGCTTAACGATCCCTTGCAATGAAGATGTGTTCTTCGAAGTCACTTCTCGCTTGGCTAATTGTTGA

Protein sequence

MGFRLNSPRKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLANC
Homology
[Close]
BLAST of Cla015869 vs. Swiss-Prot
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-25
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 9  RKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLTIPC 68
          R ++S  PKGF AVYVGE+QK+R+++P+SYL  PSFQ LLSK+EEEFGFDHPMGGLTIPC
Sbjct: 16 RSTASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHPMGGLTIPC 75

Query: 69 NEDVFFEVTSRL 81
           ED F  VTSRL
Sbjct: 76 PEDTFINVTSRL 87

[Close]
BLAST of Cla015869 vs. Swiss-Prot
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-24
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 1 

Query: 11 SSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNE 70
          + S  PKGF AVYVGE+QK+R+++P+SYL  PSFQ LLSK+EEEFGFDHPMGGLTIPC E
Sbjct: 20 AGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPE 79

Query: 71 DVFFEVTSRL 81
          D F  VTSRL
Sbjct: 80 DTFINVTSRL 89

[Close]
BLAST of Cla015869 vs. Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-24
Identity = 52/75 (69.33%), Postives = 59/75 (78.67%), Query Frame = 1 

Query: 5  LNSPRKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGL 64
          L+    ++S  PKGF AVYVGE+QK+R+++PISYL  PSFQ LLSK+EEEFGFDHPMGGL
Sbjct: 14 LSRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMGGL 73

Query: 65 TIPCNEDVFFEVTSR 80
          TIPC ED F  VTSR
Sbjct: 74 TIPCPEDTFINVTSR 88

[Close]
BLAST of Cla015869 vs. Swiss-Prot
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-24
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 13 STVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDV 72
          S  PKGF AVYVGE+QK+R+++P+SYL  PSFQ LLSK+E+EFGFDHPMGGLTIPC+ED 
Sbjct: 22 SAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMGGLTIPCHEDT 81

Query: 73 FFEVTSRL 81
          F  VTSRL
Sbjct: 82 FINVTSRL 89

[Close]
BLAST of Cla015869 vs. Swiss-Prot
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-24
Identity = 51/68 (75.00%), Postives = 56/68 (82.35%), Query Frame = 1 

Query: 13 STVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDV 72
          S  PKGF AVYVGE+QK+R+++P+SYL  PSFQ LLSK+EEEFGFDHPMGGLTIPC ED 
Sbjct: 22 SAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDT 81

Query: 73 FFEVTSRL 81
          F  VTSRL
Sbjct: 82 FINVTSRL 89

[Close]
BLAST of Cla015869 vs. TrEMBL
Match: A0A0A0K4I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G008440 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 8.7e-39
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 1 

Query: 1  MGFR-LNSPRKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDH 60
          MGFR +NSPRKSSSTVPKGF AVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDH
Sbjct: 1  MGFRLINSPRKSSSTVPKGFLAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDH 60

Query: 61 PMGGLTIPCNEDVFFEVTSRLANC 84
          PMGGLTIPCNEDVFFEVTSRLANC
Sbjct: 61 PMGGLTIPCNEDVFFEVTSRLANC 84

[Close]
BLAST of Cla015869 vs. TrEMBL
Match: K4B3U6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.2e-25
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 1 

Query: 9  RKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLTIPC 68
          R   S VPKG FAVYVGET+K+R+V+PI YL H SFQ+LL KAEEEFGF HPMGGLTIPC
Sbjct: 24 RNQISDVPKGHFAVYVGETEKKRYVVPIEYLNHISFQELLQKAEEEFGFQHPMGGLTIPC 83

Query: 69 NEDVFFEVTSRLANC 84
          NED FF VTSRL  C
Sbjct: 84 NEDAFFHVTSRLETC 98

[Close]
BLAST of Cla015869 vs. TrEMBL
Match: A0A067K719_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19614 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.1e-25
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 1 

Query: 11 SSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNE 70
          SS  VPKGF AVY+GET+K+R+++PISYL  PSFQDLLSKAEEE+GFDHPMGGLTIPC E
Sbjct: 24 SSPNVPKGFLAVYIGETEKKRYLVPISYLNEPSFQDLLSKAEEEYGFDHPMGGLTIPCGE 83

Query: 71 DVFFEVTSRL 81
          D F +VTSRL
Sbjct: 84 DTFIDVTSRL 93

[Close]
BLAST of Cla015869 vs. TrEMBL
Match: A0A067JXR9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19618 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-24
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 1 

Query: 6  NSPRKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLT 65
          N    SSS VPKGF AVY+GE +K+R+++PISYL  PSFQDLLSKAEEE+GFDHPMGGLT
Sbjct: 19 NKASSSSSNVPKGFLAVYIGEKEKKRYLVPISYLNEPSFQDLLSKAEEEYGFDHPMGGLT 78

Query: 66 IPCNEDVFFEVTSRLA 82
          IPC ED F +VTS L+
Sbjct: 79 IPCREDTFIDVTSSLS 94

[Close]
BLAST of Cla015869 vs. TrEMBL
Match: M4CD46_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-24
Identity = 53/75 (70.67%), Postives = 66/75 (88.00%), Query Frame = 1 

Query: 6  NSPRKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLT 65
          ++ +++SS+ PKGF AVYVGE+QK+R+V+PISYL  PSFQ LLSK+EEEFGFDHPMGGLT
Sbjct: 22 STSKRASSSAPKGFLAVYVGESQKKRYVVPISYLSQPSFQALLSKSEEEFGFDHPMGGLT 81

Query: 66 IPCNEDVFFEVTSRL 81
          IPC ED+F  +TSRL
Sbjct: 82 IPCPEDIFINITSRL 96

[Close]
BLAST of Cla015869 vs. NCBI nr
Match: gi|778722813|ref|XP_011658572.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-38
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 1 

Query: 1  MGFR-LNSPRKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDH 60
          MGFR +NSPRKSSSTVPKGF AVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDH
Sbjct: 1  MGFRLINSPRKSSSTVPKGFLAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDH 60

Query: 61 PMGGLTIPCNEDVFFEVTSRLANC 84
          PMGGLTIPCNEDVFFEVTSRLANC
Sbjct: 61 PMGGLTIPCNEDVFFEVTSRLANC 84

[Close]
BLAST of Cla015869 vs. NCBI nr
Match: gi|659094348|ref|XP_008448012.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-37
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1 

Query: 1  MGFR-LNSPRKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDH 60
          MGFR +NSPRKSSSTVPKGF AVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDH
Sbjct: 1  MGFRLINSPRKSSSTVPKGFLAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDH 60

Query: 61 PMGGLTIPCNEDVFFEVTSRLANC 84
          PMGGLTIPCNEDVF +VTSRLANC
Sbjct: 61 PMGGLTIPCNEDVFLKVTSRLANC 84

[Close]
BLAST of Cla015869 vs. NCBI nr
Match: gi|460370289|ref|XP_004230986.1| (PREDICTED: auxin-induced protein 15A-like [Solanum lycopersicum])

HSP 1 Score: 122.1 bits (305), Expect = 4.6e-25
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 1 

Query: 9  RKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLTIPC 68
          R   S VPKG FAVYVGET+K+R+V+PI YL H SFQ+LL KAEEEFGF HPMGGLTIPC
Sbjct: 24 RNQISDVPKGHFAVYVGETEKKRYVVPIEYLNHISFQELLQKAEEEFGFQHPMGGLTIPC 83

Query: 69 NEDVFFEVTSRLANC 84
          NED FF VTSRL  C
Sbjct: 84 NEDAFFHVTSRLETC 98

[Close]
BLAST of Cla015869 vs. NCBI nr
Match: gi|802707914|ref|XP_012084407.1| (PREDICTED: auxin-induced protein 15A-like [Jatropha curcas])

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-24
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 1 

Query: 11 SSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNE 70
          SS  VPKGF AVY+GET+K+R+++PISYL  PSFQDLLSKAEEE+GFDHPMGGLTIPC E
Sbjct: 24 SSPNVPKGFLAVYIGETEKKRYLVPISYLNEPSFQDLLSKAEEEYGFDHPMGGLTIPCGE 83

Query: 71 DVFFEVTSRL 81
          D F +VTSRL
Sbjct: 84 DTFIDVTSRL 93

[Close]
BLAST of Cla015869 vs. NCBI nr
Match: gi|923757014|ref|XP_013676066.1| (PREDICTED: auxin-responsive protein SAUR21-like [Brassica napus])

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-24
Identity = 55/72 (76.39%), Postives = 63/72 (87.50%), Query Frame = 1 

Query: 9  RKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLTIPC 68
          +K++S  PKGF AVYVGE+QK+R+V+PISYL  PSFQDLLSK+EEEFGFDHPMGGLTIPC
Sbjct: 20 KKATSAAPKGFLAVYVGESQKKRYVVPISYLSQPSFQDLLSKSEEEFGFDHPMGGLTIPC 79

Query: 69 NEDVFFEVTSRL 81
           ED F  VTSRL
Sbjct: 80 PEDTFITVTSRL 91

The following BLAST results are available for this feature:
BLAST of Cla015869 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SAU21_ARATH2.7e-2572.22Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1[more]
SAU24_ARATH1.0e-2472.86Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1[more]
SAU20_ARATH1.3e-2469.33Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1[more]
SAU22_ARATH1.7e-2473.53Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1[more]
SAU23_ARATH3.0e-2475.00Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1[more]
BLAST of Cla015869 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4I7_CUCSA8.7e-3996.43Uncharacterized protein OS=Cucumis sativus GN=Csa_7G008440 PE=4 SV=1[more]
K4B3U6_SOLLC3.2e-2574.67Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A067K719_JATCU7.1e-2577.14Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19614 PE=4 SV=1[more]
A0A067JXR9_JATCU1.2e-2471.05Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19618 PE=4 SV=1[more]
M4CD46_BRARP1.6e-2470.67Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
BLAST of Cla015869 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778722813|ref|XP_011658572.1|1.2e-3896.43PREDICTED: auxin-induced protein 15A-like [Cucumis sativus][more]
gi|659094348|ref|XP_008448012.1|1.8e-3794.05PREDICTED: auxin-induced protein 15A-like [Cucumis melo][more]
gi|460370289|ref|XP_004230986.1|4.6e-2574.67PREDICTED: auxin-induced protein 15A-like [Solanum lycopersicum][more]
gi|802707914|ref|XP_012084407.1|1.0e-2477.14PREDICTED: auxin-induced protein 15A-like [Jatropha curcas][more]
gi|923757014|ref|XP_013676066.1|1.0e-2476.39PREDICTED: auxin-responsive protein SAUR21-like [Brassica napus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003676SAUR_fam
Vocabulary: Biological Process
TermDefinition
GO:0009733response to auxin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015869Cla015869.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 10..79
score: 1.9
NoneNo IPR availablePANTHERPTHR31929FAMILY NOT NAMEDcoord: 1..80
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla015869Cla97C11G210450Watermelon (97103) v2wmwmbB315
Cla015869Csa7G008440Cucumber (Chinese Long) v2cuwmB604
Cla015869MELO3C013401Melon (DHL92) v3.5.1mewmB239
Cla015869CSPI02G12880Wild cucumber (PI 183967)cpiwmB150
Cla015869Cucsa.382120Cucumber (Gy14) v1cgywmB688
Cla015869Cucsa.169480Cucumber (Gy14) v1cgywmB321
Cla015869CmaCh19G007090Cucurbita maxima (Rimu)cmawmB503
Cla015869CmoCh19G007180Cucurbita moschata (Rifu)cmowmB496
Cla015869Lsi11G011560Bottle gourd (USVL1VR-Ls)lsiwmB106
Cla015869Lsi10G004350Bottle gourd (USVL1VR-Ls)lsiwmB079
Cla015869MELO3C013401.2Melon (DHL92) v3.6.1medwmB231
Cla015869MELO3C020756.2Melon (DHL92) v3.6.1medwmB110
Cla015869CsaV3_2G015430Cucumber (Chinese Long) v3cucwmB160
Cla015869CsaV3_7G000580Cucumber (Chinese Long) v3cucwmB634
Cla015869Bhi05G001526Wax gourdwgowmB272
Cla015869Bhi10G001533Wax gourdwgowmB383
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla015869Watermelon (97103) v2wmwmbB317
Cla015869Watermelon (97103) v2wmwmbB349
Cla015869Wax gourdwgowmB343
Cla015869Watermelon (97103) v1wmwmB073
Cla015869Watermelon (97103) v1wmwmB160
Cla015869Cucumber (Gy14) v1cgywmB296
Cla015869Cucurbita maxima (Rimu)cmawmB121
Cla015869Cucurbita maxima (Rimu)cmawmB526
Cla015869Cucurbita maxima (Rimu)cmawmB586
Cla015869Cucurbita moschata (Rifu)cmowmB117
Cla015869Cucurbita moschata (Rifu)cmowmB158
Cla015869Cucurbita moschata (Rifu)cmowmB516
Cla015869Cucurbita moschata (Rifu)cmowmB580
Cla015869Melon (DHL92) v3.5.1mewmB327
Cla015869Watermelon (Charleston Gray)wcgwmB101
Cla015869Watermelon (Charleston Gray)wcgwmB198
Cla015869Watermelon (Charleston Gray)wcgwmB422
Cla015869Cucumber (Chinese Long) v2cuwmB149
Cla015869Cucumber (Chinese Long) v2cuwmB153
Cla015869Cucurbita pepo (Zucchini)cpewmB115
Cla015869Cucurbita pepo (Zucchini)cpewmB268
Cla015869Cucurbita pepo (Zucchini)cpewmB304
Cla015869Cucurbita pepo (Zucchini)cpewmB674
Cla015869Cucurbita pepo (Zucchini)cpewmB748
Cla015869Cucurbita pepo (Zucchini)cpewmB808
Cla015869Cucumber (Gy14) v2cgybwmB141
Cla015869Cucumber (Gy14) v2cgybwmB144
Cla015869Cucumber (Gy14) v2cgybwmB566
Cla015869Melon (DHL92) v3.6.1medwmB324
Cla015869Silver-seed gourdcarwmB0137
Cla015869Silver-seed gourdcarwmB0305
Cla015869Silver-seed gourdcarwmB0985
Cla015869Cucumber (Chinese Long) v3cucwmB163