Cla015740 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015740
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MNK9_ARALL)
Location	Chr2 : 3112721 .. 3115765 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCCATGGTCAAAAAGTATCAGGAAAGATTCAGAAAGTTCAAGGATGAAATGGATCGCTGGGATGATCTTCAAGTTCGTTTGATTTCACAGTTCCAAAATGCTTCCTCTATCATCGGGAGGCTTGAGGTCAGTCTCAGTTCTGATTTTAATTACACGTATTTGTATTTATTTTTTAGTTTAAAGATAAGAATCTTTGAAAATTTATTGCCAGTTGCTTCAAGATCCTAAGAATTTTGGAAGTCTGTCTGGCATGGATGGAATTGTAGATGCGTTATTGGGGAAGCAGATGGAATCCTTGCAACTTAGTTTCTCGTCTATTAAAAAAACAATGTAAGTTTGTTTTTCTTTCAGTTTCTTTTCTTGCCCTTACATGTGATTTGTAGGAATGCTAGAAGAAAAATTCTTAAACAAAAATTCGTAAACAAAAATAAAAGGCAATCGTGAACTTGAGCACGGTCGACTGGTTATGTCATATATCCTTTATGACCAAGAAGTTATAAGTTTGAATTTCCTCCAACACATGTTGTTAAACTAAAAGAAAAGACGATCATAAAGTTAATCCAAATCTAAGAAGCACATACACTTTAGCTTGACTGGTGTGTTTCGAACAATTGGACGCCCTGACATTTGTTGGACACGTATCTAACACTTGTTAATGCAACATATTTGTTAGATACAAGTAGTACAAAGTCAAAGTAGGTTCAACATATGTTAGACATGCATCAAACACTTGTTTAGTATACTAAATTGACACATATATAATAAAAGACAATAAAATTTGAGAGCAAAATACATCAAACTAATCTTTTAAGCATATAAATGCATAAACTCATTGATTTTGAATTTCTTTCTTGTATGAAAATGATATATATTCCAAAATATAAACTTCAATAAAATTTTCCTTGCCGTGCCCATGTCCTTGATTTTAAGAAATGGTGTGACCGTGTCTGTGTCATGTCGTATCCTTGTCCGTGCTTCTTAAGTCCAAATGGTCCGTTAAAGTATTCATGCTCTCTTGTTTTCATGAATGAAGAATCTGAATAAAGATCTCAGGGAAGAACTTGGGAATGTTGTCCGTTCAATGGAGAAGATTTATCGTGATGGAAAGCAATTAGTCAAAGGTGGTTCCAATCAGCCATCAATAAAACAACTACAACAAAGAGTTGGTTTAAAACCCAGCCTTGAAGATTGCTTGAACGGGTTGATGCTTCTCTGCAACATGCACCGCTCTGAGTAAGAATTTTTCTCCTCTTTTTATGTCAAGAAAGCAAACGTGCATATGCAGTGCAAATTAAAAACTGATCATGTTTGGTCCGGATTGGAGTTTGTTTTTTCAATTAGTTTTGGGACTTCTTTTTGTCGGATTAGTTTTTTACGCCCTCGTATATTCTTTCATTTGAAAATTCGACTCTTGATCATGGTAGGAGGAAACCAACTAACCTATGAAAGTCAGATTTATATCAACTATGTTGGCTTCTTTATTAGTTGTTCCATTTTCAAGAAAATACATGTATATCTTTATTGAATTCTCAATTATATATTCTGCTTGAAGCATTTGCTTATGTTACAATACGCCTATATTTATGTTTTTGGCTTCTTAATAAACTTGTTTCAATTTCTTTAGGTACAATCTTAAAGAATCTATCGTCTCAGCACTTCCAGAACTATTTTGGAAAGCTAGGTAATTTTCCTCTCAGTTGAGGAATTTGATGGGATGTTCTGGTTGTAATTAGTGGATTAACGAAGTTGGTAGTGTAAGGGAAAAAAGCACTTGGTTTTGGAGCTTCAATTTTCTTCTGATAGTTGCATATGAAACATCCTTTTCTAGTAATTTTCTTCTGATAGTTGCATATGAAACTCAAGAACACACCGAACAAAACAAGAAAGCTAAAAGATAGAATTTCAATCAAGTTCTCGAATTCATTCCCCTTGCCTTTTGAGCTGAGCTGAGGAAAATGTGAAGAATTTCCATTTTATGAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCGGCCTAAAAAGTCGTATTCCTACCATAAAATAATGCTGATTATCTAGAATTATATTGTAATATAGAAATTACAATATACCAAAGAACAAAACAAGAAAGCTAAAAGATGGAATTATATTGTAATATCAATAAAGAAATTACAATATACCTCAACACATTTTAGAGGGCCGAGCATCCTCTCCCAAATTGTGATCTCACTTGAACTTTCATATTCAACTCCCGTTTCCTGTTTTTCTGGTATTTTCTTCGTTGATTCTTCTTTCTCTTCTTTGATATCAGCTAATCCTCTCTCCTCTCTTTCTCTATCTCTCTACAAAGATTTAATGAGCTTTTGTTGCAATGCTCTCACATTTCTTTGTATCTCCAACAATACTTCCATCCTCGGATCAAGATCCATTACTAAAAATGAATTTACAAGATGAACAGCTTTGATACCAATTTGTCACCTAACAAGAAAATACTCAAGAACACATTAATAAACTCTAGGACAATCAAATATGGAAATATATTGAAATATGCTATAATATCATAGAAAATAACAAGATAACCCCTAGCCTTTAAAGAGGGCTAGGCTCTCCCTAAATTCCCCAGTTAGAAAATCCACAAAATTCTTCTCCCCTTCCTAACACTCTCACTCCTTCTATTTATAGCAATATTTAGTAACTAGCTTCCTATCTAATAACCCTTACACCCCTTACTACTAATCATACTAATTATCCCAATATATATCTAACTAGGGGCCTAACATGATGGCCTTCAACTATCATCTTCTTTTCCCACTCCAAATTATGTTATTACTATGGCCTATTTCTTCCCCTCTGAAAATATTTGTATCTTGAATTGTTAGGAATCCTAGAGCGCAAGATCTCAGCTCCTTACAGCAACTCTTGGTTGACCAACCTAACATTCGGAAAGAGGAAGGTTAG

mRNA sequence

ATGGAGGCCATGGTCAAAAAGTATCAGGAAAGATTCAGAAAGTTCAAGGATGAAATGGATCGCTGGGATGATCTTCAAGTTCGTTTGATTTCACAGTTCCAAAATGCTTCCTCTATCATCGGGAGGCTTGAGTTGCTTCAAGATCCTAAGAATTTTGGAAGTCTGTCTGGCATGGATGGAATTGTAGATGCGTTATTGGGGAAGCAGATGGAATCCTTGCAACTTAGTTTCTCGTCTATTAAAAAAACAATGGAAGAACTTGGGAATGTTGTCCGTTCAATGGAGAAGATTTATCGTGATGGAAAGCAATTAGTCAAAGGTGGTTCCAATCAGCCATCAATAAAACAACTACAACAAAGAGTTGGTTTAAAACCCAGCCTTGAAGATTGCTTGAACGGGTTGATGCTTCTCTGCAACATGCACCGCTCTGAGTACAATCTTAAAGAATCTATCGTCTCAGCACTTCCAGAACTATTTTGGAAAGCTAGGAATCCTAGAGCGCAAGATCTCAGCTCCTTACAGCAACTCTTGGTTGACCAACCTAACATTCGGAAAGAGGAAGGTTAG

Coding sequence (CDS)

ATGGAGGCCATGGTCAAAAAGTATCAGGAAAGATTCAGAAAGTTCAAGGATGAAATGGATCGCTGGGATGATCTTCAAGTTCGTTTGATTTCACAGTTCCAAAATGCTTCCTCTATCATCGGGAGGCTTGAGTTGCTTCAAGATCCTAAGAATTTTGGAAGTCTGTCTGGCATGGATGGAATTGTAGATGCGTTATTGGGGAAGCAGATGGAATCCTTGCAACTTAGTTTCTCGTCTATTAAAAAAACAATGGAAGAACTTGGGAATGTTGTCCGTTCAATGGAGAAGATTTATCGTGATGGAAAGCAATTAGTCAAAGGTGGTTCCAATCAGCCATCAATAAAACAACTACAACAAAGAGTTGGTTTAAAACCCAGCCTTGAAGATTGCTTGAACGGGTTGATGCTTCTCTGCAACATGCACCGCTCTGAGTACAATCTTAAAGAATCTATCGTCTCAGCACTTCCAGAACTATTTTGGAAAGCTAGGAATCCTAGAGCGCAAGATCTCAGCTCCTTACAGCAACTCTTGGTTGACCAACCTAACATTCGGAAAGAGGAAGGTTAG

Protein sequence

MEAMVKKYQERFRKFKDEMDRWDDLQVRLISQFQNASSIIGRLELLQDPKNFGSLSGMDGIVDALLGKQMESLQLSFSSIKKTMEELGNVVRSMEKIYRDGKQLVKGGSNQPSIKQLQQRVGLKPSLEDCLNGLMLLCNMHRSEYNLKESIVSALPELFWKARNPRAQDLSSLQQLLVDQPNIRKEEG

Homology

[Close]

BLAST of Cla015740 vs. Swiss-Prot
Match: Y5382_ARATH (Uncharacterized protein At5g43822 OS=Arabidopsis thaliana GN=At5g43822 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.1e-39
Identity = 87/187 (46.52%), Postives = 132/187 (70.59%), Query Frame = 1


Query: 1   MEAMVKKYQERFRKFKDEMDRWDDLQVRLISQFQNASSIIGRLELLQDPKNFGSLSGMDG 60
           MEA+++K+Q++FRK K+EM++W+ LQVR +S F+NASSII RL+ +Q+  ++G+L  + G
Sbjct: 1   MEAVIRKWQQKFRKGKEEMEKWEALQVRWVSLFRNASSIIQRLQEMQNHGSYGALRCLKG 60

Query: 61  IVDALLGKQMESLQLSFSSIKKTMEELGNVVRSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120
           I DA++ +QM  L+    S+K  MEE    V + EK++RDG QL +  S++   +++++R
Sbjct: 61  IEDAVVQQQMGQLESLLRSMKNVMEEFWGCVLTFEKLHRDGLQLREIESSK---RRVEER 120

Query: 121 VGLKPSLEDCLNGLMLLCNMHRSEYNLKESIVSALPELFWKARNPRAQDLSSLQQLLVDQ 180
           +G+KP + DCL GL +L +MH+SEY+LK SI+S L  L  K   P   DL++LQ L+VDQ
Sbjct: 121 IGVKPCITDCLEGLSILYDMHQSEYHLKSSILSVLSCLILK---PSPGDLNALQYLVVDQ 180

Query: 181 PNIRKEE 188
           PNI K+E
Sbjct: 181 PNIPKDE 181

[Close]

BLAST of Cla015740 vs. TrEMBL
Match: A0A0A0K4X9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025190 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.4e-92
Identity = 174/187 (93.05%), Postives = 182/187 (97.33%), Query Frame = 1


Query: 1   MEAMVKKYQERFRKFKDEMDRWDDLQVRLISQFQNASSIIGRLELLQDPKNFGSLSGMDG 60
           MEAMVKKYQ+RFRKFKDEMDRWD+LQVRLISQFQNASSIIGRL+LLQDPKNFGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQLLQDPKNFGSLSGMDG 60

Query: 61  IVDALLGKQMESLQLSFSSIKKTMEELGNVVRSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120
           IV+ALL KQMESLQLSFSSIKKTMEELGN+V SMEKIYRDGKQLVKGGSNQPSIKQLQQ+
Sbjct: 61  IVEALLAKQMESLQLSFSSIKKTMEELGNIVNSMEKIYRDGKQLVKGGSNQPSIKQLQQK 120

Query: 121 VGLKPSLEDCLNGLMLLCNMHRSEYNLKESIVSALPELFWKARNPRAQDLSSLQQLLVDQ 180
           VGLKPSLEDCLNGLMLLC+MHRSEYNLKESIVSALPELFWKARN  AQDLSSL QLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLMLLCHMHRSEYNLKESIVSALPELFWKARNHGAQDLSSLHQLLVDQ 180

Query: 181 PNIRKEE 188
           PNI+KEE
Sbjct: 181 PNIKKEE 187

[Close]

BLAST of Cla015740 vs. TrEMBL
Match: A0A059BPU4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01788 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-57
Identity = 117/187 (62.57%), Postives = 150/187 (80.21%), Query Frame = 1


Query: 1   MEAMVKKYQERFRKFKDEMDRWDDLQVRLISQFQNASSIIGRLELLQDPKNFGSLSGMDG 60
           MEA V+K+Q++F+K ++EMDRW +LQ+RL+SQF+NASSI+ RL++++D KN+G L  +DG
Sbjct: 1   MEAAVRKFQQKFKKVREEMDRWGELQLRLVSQFRNASSIMDRLQVIRDGKNYGPLKAVDG 60

Query: 61  IVDALLGKQMESLQLSFSSIKKTMEELGNVVRSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120
           I +A+  KQ+ESL+    S++KTMEE   VV S+EKI+RDGKQLVKGGS QPS+K LQQR
Sbjct: 61  IGEAVWTKQVESLENIMLSMRKTMEEFHGVVMSLEKIHRDGKQLVKGGSGQPSVKYLQQR 120

Query: 121 VGLKPSLEDCLNGLMLLCNMHRSEYNLKESIVSALPELFWKARNPRAQDLSSLQQLLVDQ 180
           VG+KP L+DCL+GLM+L  MHRSEY LK S+VSAL  L   A  P A DL +LQQLLVDQ
Sbjct: 121 VGVKPCLQDCLDGLMILYEMHRSEYFLKSSVVSALSTL---ALKPSASDLHALQQLLVDQ 180

Query: 181 PNIRKEE 188
           PNI KEE
Sbjct: 181 PNIPKEE 184

[Close]

BLAST of Cla015740 vs. TrEMBL
Match: A0A0K9QTK1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_142870 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.1e-56
Identity = 114/187 (60.96%), Postives = 149/187 (79.68%), Query Frame = 1


Query: 1   MEAMVKKYQERFRKFKDEMDRWDDLQVRLISQFQNASSIIGRLELLQDPKNFGSLSGMDG 60
           ME ++KKYQ++FRK ++EMDRW+DLQ RL+SQF NASSIIGRL+++ D KN+GSL G++G
Sbjct: 1   MEGILKKYQQKFRKVREEMDRWEDLQSRLMSQFSNASSIIGRLQMIGDKKNYGSLKGVNG 60

Query: 61  IVDALLGKQMESLQLSFSSIKKTMEELGNVVRSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120
           + DA+L KQMESL+    SIKKT+E+  ++V S+EK+ RD KQLV+GGS+Q S KQLQQR
Sbjct: 61  VEDAVLQKQMESLETILLSIKKTVEDFHSIVLSLEKMVRDSKQLVQGGSHQRSTKQLQQR 120

Query: 121 VGLKPSLEDCLNGLMLLCNMHRSEYNLKESIVSALPELFWKARNPRAQDLSSLQQLLVDQ 180
           VGLKPSL DCL+GL +L  MH SEY LK S+VSAL  +   A  P ++DL +L+QLL DQ
Sbjct: 121 VGLKPSLSDCLDGLAILLEMHNSEYLLKSSVVSALLNI---ALKPSSKDLGALRQLLFDQ 180

Query: 181 PNIRKEE 188
           PNI ++E
Sbjct: 181 PNIPRDE 184

[Close]

BLAST of Cla015740 vs. TrEMBL
Match: A0A067GZY6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028912mg PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.7e-56
Identity = 118/187 (63.10%), Postives = 149/187 (79.68%), Query Frame = 1


Query: 1   MEAMVKKYQERFRKFKDEMDRWDDLQVRLISQFQNASSIIGRLELLQDPKNFGSLSGMDG 60
           ME +VKKYQ++F+K K+EM+RWD+LQ RLISQF+NASSII RL++LQD K++G+L+ + G
Sbjct: 1   MEGIVKKYQQKFKKIKEEMNRWDELQSRLISQFKNASSIIERLQILQDAKHYGNLNSIGG 60

Query: 61  IVDALLGKQMESLQLSFSSIKKTMEELGNVVRSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120
           I  A+L KQMESLQ    S++KT+EE   +V S+EK +RDGKQLV+GGSNQ ++KQLQQR
Sbjct: 61  IEAAVLRKQMESLQTILLSMQKTLEEFRGIVLSLEKFHRDGKQLVRGGSNQLTVKQLQQR 120

Query: 121 VGLKPSLEDCLNGLMLLCNMHRSEYNLKESIVSALPELFWKARNPRAQDLSSLQQLLVDQ 180
           VGLKP+L DCL+GLM+L +MH SEY LK S+VS L  L   A  P   DL +LQQLLVDQ
Sbjct: 121 VGLKPTLADCLDGLMILWDMHNSEYVLKISLVSTLSTL---AVKPCTFDLGALQQLLVDQ 180

Query: 181 PNIRKEE 188
           PNI KEE
Sbjct: 181 PNIPKEE 184

[Close]

BLAST of Cla015740 vs. TrEMBL
Match: V4TG37_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002549mg PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.7e-56
Identity = 118/187 (63.10%), Postives = 149/187 (79.68%), Query Frame = 1


Query: 1   MEAMVKKYQERFRKFKDEMDRWDDLQVRLISQFQNASSIIGRLELLQDPKNFGSLSGMDG 60
           ME +VKKYQ++F+K K+EM+RWD+LQ RLISQF+NASSII RL++LQD K++G+L+ + G
Sbjct: 1   MEGIVKKYQQKFKKIKEEMNRWDELQSRLISQFKNASSIIERLQILQDAKHYGNLNSIGG 60

Query: 61  IVDALLGKQMESLQLSFSSIKKTMEELGNVVRSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120
           I  A+L KQMESLQ    S++KT+EE   +V S+EK +RDGKQLV+GGSNQ ++KQLQQR
Sbjct: 61  IEAAVLRKQMESLQTILLSMQKTLEEFRGIVLSLEKFHRDGKQLVRGGSNQLTVKQLQQR 120

Query: 121 VGLKPSLEDCLNGLMLLCNMHRSEYNLKESIVSALPELFWKARNPRAQDLSSLQQLLVDQ 180
           VGLKP+L DCL+GLM+L +MH SEY LK S+VS L  L   A  P   DL +LQQLLVDQ
Sbjct: 121 VGLKPTLADCLDGLMILWDMHNSEYVLKISLVSTLSTL---AVKPCTFDLGALQQLLVDQ 180

Query: 181 PNIRKEE 188
           PNI KEE
Sbjct: 181 PNIPKEE 184

[Close]

BLAST of Cla015740 vs. NCBI nr
Match: gi|659094000|ref|XP_008447827.1| (PREDICTED: uncharacterized protein At5g43822 isoform X1 [Cucumis melo])

HSP 1 Score: 349.0 bits (894), Expect = 5.2e-93
Identity = 176/187 (94.12%), Postives = 183/187 (97.86%), Query Frame = 1


Query: 1   MEAMVKKYQERFRKFKDEMDRWDDLQVRLISQFQNASSIIGRLELLQDPKNFGSLSGMDG 60
           MEAMVKKYQ+RFRKFKDEMDRWD+LQVRLISQFQNASSIIGRL+LLQDPKNFGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQLLQDPKNFGSLSGMDG 60

Query: 61  IVDALLGKQMESLQLSFSSIKKTMEELGNVVRSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120
           IV+ALLGKQMESLQLSFSSIKKTMEELGNVV SMEKIYRDGKQLVKGGSNQPSIKQLQQR
Sbjct: 61  IVEALLGKQMESLQLSFSSIKKTMEELGNVVNSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120

Query: 121 VGLKPSLEDCLNGLMLLCNMHRSEYNLKESIVSALPELFWKARNPRAQDLSSLQQLLVDQ 180
           VGLKPSLEDCLNGLM+LCNMHRSEY+LKESIVSALPELFWKARN  AQDLSSL QLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLMVLCNMHRSEYSLKESIVSALPELFWKARNHGAQDLSSLHQLLVDQ 180

Query: 181 PNIRKEE 188
           PNI+KEE
Sbjct: 181 PNIKKEE 187

[Close]

BLAST of Cla015740 vs. NCBI nr
Match: gi|449454299|ref|XP_004144893.1| (PREDICTED: uncharacterized protein At5g43822 isoform X1 [Cucumis sativus])

HSP 1 Score: 346.3 bits (887), Expect = 3.4e-92
Identity = 174/187 (93.05%), Postives = 182/187 (97.33%), Query Frame = 1


Query: 1   MEAMVKKYQERFRKFKDEMDRWDDLQVRLISQFQNASSIIGRLELLQDPKNFGSLSGMDG 60
           MEAMVKKYQ+RFRKFKDEMDRWD+LQVRLISQFQNASSIIGRL+LLQDPKNFGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQLLQDPKNFGSLSGMDG 60

Query: 61  IVDALLGKQMESLQLSFSSIKKTMEELGNVVRSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120
           IV+ALL KQMESLQLSFSSIKKTMEELGN+V SMEKIYRDGKQLVKGGSNQPSIKQLQQ+
Sbjct: 61  IVEALLAKQMESLQLSFSSIKKTMEELGNIVNSMEKIYRDGKQLVKGGSNQPSIKQLQQK 120

Query: 121 VGLKPSLEDCLNGLMLLCNMHRSEYNLKESIVSALPELFWKARNPRAQDLSSLQQLLVDQ 180
           VGLKPSLEDCLNGLMLLC+MHRSEYNLKESIVSALPELFWKARN  AQDLSSL QLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLMLLCHMHRSEYNLKESIVSALPELFWKARNHGAQDLSSLHQLLVDQ 180

Query: 181 PNIRKEE 188
           PNI+KEE
Sbjct: 181 PNIKKEE 187

[Close]

BLAST of Cla015740 vs. NCBI nr
Match: gi|659094002|ref|XP_008447828.1| (PREDICTED: uncharacterized protein At5g43822 isoform X2 [Cucumis melo])

HSP 1 Score: 339.7 bits (870), Expect = 3.2e-90
Identity = 174/187 (93.05%), Postives = 180/187 (96.26%), Query Frame = 1


Query: 1   MEAMVKKYQERFRKFKDEMDRWDDLQVRLISQFQNASSIIGRLELLQDPKNFGSLSGMDG 60
           MEAMVKKYQ+RFRKFKDEMDRWD+LQVRLISQFQNASSIIGRL   QDPKNFGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRL---QDPKNFGSLSGMDG 60

Query: 61  IVDALLGKQMESLQLSFSSIKKTMEELGNVVRSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120
           IV+ALLGKQMESLQLSFSSIKKTMEELGNVV SMEKIYRDGKQLVKGGSNQPSIKQLQQR
Sbjct: 61  IVEALLGKQMESLQLSFSSIKKTMEELGNVVNSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120

Query: 121 VGLKPSLEDCLNGLMLLCNMHRSEYNLKESIVSALPELFWKARNPRAQDLSSLQQLLVDQ 180
           VGLKPSLEDCLNGLM+LCNMHRSEY+LKESIVSALPELFWKARN  AQDLSSL QLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLMVLCNMHRSEYSLKESIVSALPELFWKARNHGAQDLSSLHQLLVDQ 180

Query: 181 PNIRKEE 188
           PNI+KEE
Sbjct: 181 PNIKKEE 184

[Close]

BLAST of Cla015740 vs. NCBI nr
Match: gi|778723284|ref|XP_011658635.1| (PREDICTED: uncharacterized protein At5g43822 isoform X2 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 2.1e-89
Identity = 172/187 (91.98%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 1   MEAMVKKYQERFRKFKDEMDRWDDLQVRLISQFQNASSIIGRLELLQDPKNFGSLSGMDG 60
           MEAMVKKYQ+RFRKFKDEMDRWD+LQVRLISQFQNASSIIGRL   QDPKNFGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRL---QDPKNFGSLSGMDG 60

Query: 61  IVDALLGKQMESLQLSFSSIKKTMEELGNVVRSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120
           IV+ALL KQMESLQLSFSSIKKTMEELGN+V SMEKIYRDGKQLVKGGSNQPSIKQLQQ+
Sbjct: 61  IVEALLAKQMESLQLSFSSIKKTMEELGNIVNSMEKIYRDGKQLVKGGSNQPSIKQLQQK 120

Query: 121 VGLKPSLEDCLNGLMLLCNMHRSEYNLKESIVSALPELFWKARNPRAQDLSSLQQLLVDQ 180
           VGLKPSLEDCLNGLMLLC+MHRSEYNLKESIVSALPELFWKARN  AQDLSSL QLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLMLLCHMHRSEYNLKESIVSALPELFWKARNHGAQDLSSLHQLLVDQ 180

Query: 181 PNIRKEE 188
           PNI+KEE
Sbjct: 181 PNIKKEE 184

[Close]

BLAST of Cla015740 vs. NCBI nr
Match: gi|659094004|ref|XP_008447830.1| (PREDICTED: uncharacterized protein At5g43822 isoform X3 [Cucumis melo])

HSP 1 Score: 311.2 bits (796), Expect = 1.2e-81
Identity = 156/166 (93.98%), Postives = 163/166 (98.19%), Query Frame = 1


Query: 1   MEAMVKKYQERFRKFKDEMDRWDDLQVRLISQFQNASSIIGRLELLQDPKNFGSLSGMDG 60
           MEAMVKKYQ+RFRKFKDEMDRWD+LQVRLISQFQNASSIIGRL+LLQDPKNFGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQLLQDPKNFGSLSGMDG 60

Query: 61  IVDALLGKQMESLQLSFSSIKKTMEELGNVVRSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120
           IV+ALLGKQMESLQLSFSSIKKTMEELGNVV SMEKIYRDGKQLVKGGSNQPSIKQLQQR
Sbjct: 61  IVEALLGKQMESLQLSFSSIKKTMEELGNVVNSMEKIYRDGKQLVKGGSNQPSIKQLQQR 120

Query: 121 VGLKPSLEDCLNGLMLLCNMHRSEYNLKESIVSALPELFWKARNPR 167
           VGLKPSLEDCLNGLM+LCNMHRSEY+LKESIVSALPELFWKA + R
Sbjct: 121 VGLKPSLEDCLNGLMVLCNMHRSEYSLKESIVSALPELFWKASSIR 166

The following BLAST results are available for this feature:

BLAST of Cla015740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y5382_ARATH	1.1e-39	46.52	Uncharacterized protein At5g43822 OS=Arabidopsis thaliana GN=At5g43822 PE=2 SV=1	[more]

BLAST of Cla015740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4X9_CUCSA	2.4e-92	93.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025190 PE=4 SV=1	[more]
A0A059BPU4_EUCGR	1.5e-57	62.57	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01788 PE=4 SV=1	[more]
A0A0K9QTK1_SPIOL	2.1e-56	60.96	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_142870 PE=4 SV=1	[more]
A0A067GZY6_CITSI	2.7e-56	63.10	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028912mg PE=4 SV=1	[more]
V4TG37_9ROSI	2.7e-56	63.10	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002549mg PE=4 SV=1	[more]

BLAST of Cla015740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094000\|ref\|XP_008447827.1\|	5.2e-93	94.12	PREDICTED: uncharacterized protein At5g43822 isoform X1 [Cucumis melo]	[more]
gi\|449454299\|ref\|XP_004144893.1\|	3.4e-92	93.05	PREDICTED: uncharacterized protein At5g43822 isoform X1 [Cucumis sativus]	[more]
gi\|659094002\|ref\|XP_008447828.1\|	3.2e-90	93.05	PREDICTED: uncharacterized protein At5g43822 isoform X2 [Cucumis melo]	[more]
gi\|778723284\|ref\|XP_011658635.1\|	2.1e-89	91.98	PREDICTED: uncharacterized protein At5g43822 isoform X2 [Cucumis sativus]	[more]
gi\|659094004\|ref\|XP_008447830.1\|	1.2e-81	93.98	PREDICTED: uncharacterized protein At5g43822 isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005635	nuclear envelope
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU62927	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015740	Cla015740.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU62927	WMU62927	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 5..25 scor
None	No IPR available	PANTHER	PTHR37904	FAMILY NOT NAMED	coord: 2..188 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla015740	Cla97C02G029940	Watermelon (97103) v2	wmwmbB317
Cla015740	Csa7G025190	Cucumber (Chinese Long) v2	cuwmB604
Cla015740	MELO3C013247	Melon (DHL92) v3.5.1	mewmB239
Cla015740	ClCG02G003390	Watermelon (Charleston Gray)	wcgwmB198
Cla015740	CSPI07G01820	Wild cucumber (PI 183967)	cpiwmB622
Cla015740	Cucsa.099740	Cucumber (Gy14) v1	cgywmB130
Cla015740	CmaCh11G013300	Cucurbita maxima (Rimu)	cmawmB121
Cla015740	CmoCh11G017900	Cucurbita moschata (Rifu)	cmowmB117
Cla015740	Lsi11G012910	Bottle gourd (USVL1VR-Ls)	lsiwmB106
Cla015740	Cp4.1LG04g04510	Cucurbita pepo (Zucchini)	cpewmB674
Cla015740	CsGy7G001780	Cucumber (Gy14) v2	cgybwmB566
Cla015740	MELO3C013247.2	Melon (DHL92) v3.6.1	medwmB231
Cla015740	Carg18114	Silver-seed gourd	carwmB1066
Cla015740	CsaV3_7G001930	Cucumber (Chinese Long) v3	cucwmB634
Cla015740	Bhi05G001353	Wax gourd	wgowmB272

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015740	Cucurbita pepo (Zucchini)	cpewmB268
Cla015740	Cucurbita pepo (Zucchini)	cpewmB305
Cla015740	Cucurbita pepo (Zucchini)	cpewmB737
Cla015740	Bottle gourd (USVL1VR-Ls)	lsiwmB080
Cla015740	Cucumber (Gy14) v2	cgybwmB484
Cla015740	Melon (DHL92) v3.6.1	medwmB109
Cla015740	Melon (DHL92) v3.6.1	medwmB234
Cla015740	Silver-seed gourd	carwmB0194
Cla015740	Silver-seed gourd	carwmB0334
Cla015740	Silver-seed gourd	carwmB0854
Cla015740	Cucumber (Chinese Long) v3	cucwmB541
Cla015740	Cucumber (Gy14) v1	cgywmB186
Cla015740	Cucurbita maxima (Rimu)	cmawmB503
Cla015740	Cucurbita maxima (Rimu)	cmawmB527
Cla015740	Cucurbita maxima (Rimu)	cmawmB597
Cla015740	Cucurbita moschata (Rifu)	cmowmB496
Cla015740	Cucurbita moschata (Rifu)	cmowmB515
Cla015740	Cucurbita moschata (Rifu)	cmowmB591
Cla015740	Melon (DHL92) v3.5.1	mewmB110
Cla015740	Cucumber (Chinese Long) v2	cuwmB516