Cla014739 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla014739
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr9 : 5422109 .. 5422807 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATAGAAGCAGGATTCGTAAAAATCAGTGGAGGAAACAACTTGGATCCATCAATTTTGGTAAAAACAATTGCAAAAGCTGGCAAAAAAGCACAATTTCCGGCCATGGAGAATGCGGCAACGGCACCGGCACCGATTGGCCAAAAAGCACAATTTCCGACCATGGAGAATACGGCACAGGCACCGGCACCGGCACCGCTGGGCAAAAAATCACAATTTCCGGCCATGAAGAATACGGCACCGGCGCCGGCGGCCACCATTGACATTGTTTCGGATCATCATAACAGACCTTCCATTAATTCAGACAATCGCTGCCACAAAATTGACAGGACTAAATATGGCAATTCCGACTCTAGCCATTTTTCCGACCACCATGGCTGTTCCGACAAGGTTCACATCAACGAGGCGGCCGCCGTCAATCCGCCAGTGGCTTTGCCATTCCACAACCAGCAGTTTATGCGGCCGGTGTCGCAATATGGAGGTGTGGGTTTTCGGGGAAGTCATGGTTCTTGGCCTCGAATGTCGGAATCGATGTCGCCACCGCCGCCGATGCCACCAATGTCACCGGCACATAGATATTATCGGTGGTCGGAACCCCTACCTTATTATTTGCAGGAGCAACCGCCACCGGTGGGGAATGCGCCGGGGCACTACCTATTCAACGACGAGAATACAGACGGGTGTATGATTGTTTAG

mRNA sequence

ATGGATATAGAAGCAGGATTCGTAAAAATCAGTGGAGGAAACAACTTGGATCCATCAATTTTGGTAAAAACAATTGCAAAAGCTGGCAAAAAAGCACAATTTCCGGCCATGGAGAATGCGGCAACGGCACCGGCACCGATTGGCCAAAAAGCACAATTTCCGACCATGGAGAATACGGCACAGGCACCGGCACCGGCACCGCTGGGCAAAAAATCACAATTTCCGGCCATGAAGAATACGGCACCGGCGCCGGCGGCCACCATTGACATTGTTTCGGATCATCATAACAGACCTTCCATTAATTCAGACAATCGCTGCCACAAAATTGACAGGACTAAATATGGCAATTCCGACTCTAGCCATTTTTCCGACCACCATGGCTGTTCCGACAAGGTTCACATCAACGAGGCGGCCGCCGTCAATCCGCCAGTGGCTTTGCCATTCCACAACCAGCAGTTTATGCGGCCGGTGTCGCAATATGGAGGTGTGGGTTTTCGGGGAAGTCATGGTTCTTGGCCTCGAATGTCGGAATCGATGTCGCCACCGCCGCCGATGCCACCAATGTCACCGGCACATAGATATTATCGGTGGTCGGAACCCCTACCTTATTATTTGCAGGAGCAACCGCCACCGGTGGGGAATGCGCCGGGGCACTACCTATTCAACGACGAGAATACAGACGGGTGTATGATTGTTTAG

Coding sequence (CDS)

ATGGATATAGAAGCAGGATTCGTAAAAATCAGTGGAGGAAACAACTTGGATCCATCAATTTTGGTAAAAACAATTGCAAAAGCTGGCAAAAAAGCACAATTTCCGGCCATGGAGAATGCGGCAACGGCACCGGCACCGATTGGCCAAAAAGCACAATTTCCGACCATGGAGAATACGGCACAGGCACCGGCACCGGCACCGCTGGGCAAAAAATCACAATTTCCGGCCATGAAGAATACGGCACCGGCGCCGGCGGCCACCATTGACATTGTTTCGGATCATCATAACAGACCTTCCATTAATTCAGACAATCGCTGCCACAAAATTGACAGGACTAAATATGGCAATTCCGACTCTAGCCATTTTTCCGACCACCATGGCTGTTCCGACAAGGTTCACATCAACGAGGCGGCCGCCGTCAATCCGCCAGTGGCTTTGCCATTCCACAACCAGCAGTTTATGCGGCCGGTGTCGCAATATGGAGGTGTGGGTTTTCGGGGAAGTCATGGTTCTTGGCCTCGAATGTCGGAATCGATGTCGCCACCGCCGCCGATGCCACCAATGTCACCGGCACATAGATATTATCGGTGGTCGGAACCCCTACCTTATTATTTGCAGGAGCAACCGCCACCGGTGGGGAATGCGCCGGGGCACTACCTATTCAACGACGAGAATACAGACGGGTGTATGATTGTTTAG

Protein sequence

MDIEAGFVKISGGNNLDPSILVKTIAKAGKKAQFPAMENAATAPAPIGQKAQFPTMENTAQAPAPAPLGKKSQFPAMKNTAPAPAATIDIVSDHHNRPSINSDNRCHKIDRTKYGNSDSSHFSDHHGCSDKVHINEAAAVNPPVALPFHNQQFMRPVSQYGGVGFRGSHGSWPRMSESMSPPPPMPPMSPAHRYYRWSEPLPYYLQEQPPPVGNAPGHYLFNDENTDGCMIV

Homology

[Close]

BLAST of Cla014739 vs. TrEMBL
Match: A0A0A0K5U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G392360 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.3e-65
Identity = 140/244 (57.38%), Postives = 155/244 (63.52%), Query Frame = 1


Query: 1   MDIEAGFVKISGGNNLDPSILVKTIAKAGKKAQFPAMENAATAPAPIGQKAQFPTMENTA 60
           M+IE G VKISG  N DP I +KTI KAGKKAQFPAM+N A AP+PI Q  QFPT EN  
Sbjct: 12  MNIETGLVKISGEKNFDPFIFLKTITKAGKKAQFPAMQNTA-APSPIAQNPQFPTKENMT 71

Query: 61  QAPAPAPLGKKSQFPAMKNTAPAPAATIDIVSDH--HNRPSINSDNRCHKIDRTKYGNSD 120
            APAPAP    S                D  S H  H+  SINS+N C K D    GNSD
Sbjct: 72  SAPAPAPAATSS----------------DNASGHPIHHSHSINSNNHCCKSD----GNSD 131

Query: 121 SSHFSDHHGCSDKVHINEAAAVNPPVALPFHNQQFMRPVS---------QYGG-VGFRGS 180
           + +FSDH    DKVHINEAA+VNPPVALP HN+  MRP           QYG  +GFRGS
Sbjct: 132 AGNFSDHRSWPDKVHINEAASVNPPVALPLHNRMLMRPPMPSLRPPPPPQYGDHMGFRGS 191

Query: 181 HGSWPRMSESMSPPPPMPPMSPAHRYYRWSEPLPYYLQEQPPPVGNAPGHYLFNDENTDG 233
           HG WP MSE  S P   PP    H YYRW EP+PYYLQEQ PPVGN P HY+FNDENT+G
Sbjct: 192 HGFWPGMSEPWSSPSHPPP---PHSYYRWPEPVPYYLQEQQPPVGNTPNHYVFNDENTEG 231

[Close]

BLAST of Cla014739 vs. NCBI nr
Match: gi|700189630|gb|KGN44863.1| (hypothetical protein Csa_7G392360 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 3.3e-65
Identity = 140/244 (57.38%), Postives = 155/244 (63.52%), Query Frame = 1


Query: 1   MDIEAGFVKISGGNNLDPSILVKTIAKAGKKAQFPAMENAATAPAPIGQKAQFPTMENTA 60
           M+IE G VKISG  N DP I +KTI KAGKKAQFPAM+N A AP+PI Q  QFPT EN  
Sbjct: 12  MNIETGLVKISGEKNFDPFIFLKTITKAGKKAQFPAMQNTA-APSPIAQNPQFPTKENMT 71

Query: 61  QAPAPAPLGKKSQFPAMKNTAPAPAATIDIVSDH--HNRPSINSDNRCHKIDRTKYGNSD 120
            APAPAP    S                D  S H  H+  SINS+N C K D    GNSD
Sbjct: 72  SAPAPAPAATSS----------------DNASGHPIHHSHSINSNNHCCKSD----GNSD 131

Query: 121 SSHFSDHHGCSDKVHINEAAAVNPPVALPFHNQQFMRPVS---------QYGG-VGFRGS 180
           + +FSDH    DKVHINEAA+VNPPVALP HN+  MRP           QYG  +GFRGS
Sbjct: 132 AGNFSDHRSWPDKVHINEAASVNPPVALPLHNRMLMRPPMPSLRPPPPPQYGDHMGFRGS 191

Query: 181 HGSWPRMSESMSPPPPMPPMSPAHRYYRWSEPLPYYLQEQPPPVGNAPGHYLFNDENTDG 233
           HG WP MSE  S P   PP    H YYRW EP+PYYLQEQ PPVGN P HY+FNDENT+G
Sbjct: 192 HGFWPGMSEPWSSPSHPPP---PHSYYRWPEPVPYYLQEQQPPVGNTPNHYVFNDENTEG 231

The following BLAST results are available for this feature:

BLAST of Cla014739 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5U2_CUCSA	2.3e-65	57.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G392360 PE=4 SV=1	[more]

BLAST of Cla014739 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189630\|gb\|KGN44863.1\|	3.3e-65	57.38	hypothetical protein Csa_7G392360 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006412	translation
biological_process	GO:0030001	metal ion transport
biological_process	GO:0046916	cellular transition metal ion homeostasis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046914	transition metal ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU20836	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla014739	Cla014739.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU20836	WMU20836	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla014739	Cla97C09G169410	Watermelon (97103) v2	wmwmbB041
Cla014739	Csa7G392360	Cucumber (Chinese Long) v2	cuwmB553
Cla014739	MELO3C015863	Melon (DHL92) v3.5.1	mewmB199
Cla014739	ClCG09G006840	Watermelon (Charleston Gray)	wcgwmB007
Cla014739	CSPI07G16790	Wild cucumber (PI 183967)	cpiwmB572
Cla014739	CmoCh08G003580	Cucurbita moschata (Rifu)	cmowmB843
Cla014739	Lsi02G023140	Bottle gourd (USVL1VR-Ls)	lsiwmB175
Cla014739	MELO3C015863.2	Melon (DHL92) v3.6.1	medwmB195
Cla014739	CsaV3_7G028560	Cucumber (Chinese Long) v3	cucwmB579

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla014739	Cucumber (Gy14) v1	cgywmB092
Cla014739	Cucumber (Gy14) v1	cgywmB094
Cla014739	Cucumber (Gy14) v1	cgywmB472
Cla014739	Cucurbita maxima (Rimu)	cmawmB328
Cla014739	Cucurbita maxima (Rimu)	cmawmB778
Cla014739	Cucurbita maxima (Rimu)	cmawmB856
Cla014739	Cucurbita moschata (Rifu)	cmowmB322
Cla014739	Cucurbita moschata (Rifu)	cmowmB772
Cla014739	Wild cucumber (PI 183967)	cpiwmB189
Cla014739	Melon (DHL92) v3.5.1	mewmB445
Cla014739	Cucurbita pepo (Zucchini)	cpewmB131
Cla014739	Cucurbita pepo (Zucchini)	cpewmB311
Cla014739	Cucurbita pepo (Zucchini)	cpewmB590
Cla014739	Cucurbita pepo (Zucchini)	cpewmB823
Cla014739	Cucumber (Gy14) v2	cgybwmB179
Cla014739	Cucumber (Gy14) v2	cgybwmB517
Cla014739	Melon (DHL92) v3.6.1	medwmB432
Cla014739	Silver-seed gourd	carwmB0106
Cla014739	Silver-seed gourd	carwmB0861
Cla014739	Cucumber (Chinese Long) v3	cucwmB200
Cla014739	Wax gourd	wgowmB580