Cla014739 (gene) Watermelon (97103) v1

NameCla014739
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 5422109 .. 5422807 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATAGAAGCAGGATTCGTAAAAATCAGTGGAGGAAACAACTTGGATCCATCAATTTTGGTAAAAACAATTGCAAAAGCTGGCAAAAAAGCACAATTTCCGGCCATGGAGAATGCGGCAACGGCACCGGCACCGATTGGCCAAAAAGCACAATTTCCGACCATGGAGAATACGGCACAGGCACCGGCACCGGCACCGCTGGGCAAAAAATCACAATTTCCGGCCATGAAGAATACGGCACCGGCGCCGGCGGCCACCATTGACATTGTTTCGGATCATCATAACAGACCTTCCATTAATTCAGACAATCGCTGCCACAAAATTGACAGGACTAAATATGGCAATTCCGACTCTAGCCATTTTTCCGACCACCATGGCTGTTCCGACAAGGTTCACATCAACGAGGCGGCCGCCGTCAATCCGCCAGTGGCTTTGCCATTCCACAACCAGCAGTTTATGCGGCCGGTGTCGCAATATGGAGGTGTGGGTTTTCGGGGAAGTCATGGTTCTTGGCCTCGAATGTCGGAATCGATGTCGCCACCGCCGCCGATGCCACCAATGTCACCGGCACATAGATATTATCGGTGGTCGGAACCCCTACCTTATTATTTGCAGGAGCAACCGCCACCGGTGGGGAATGCGCCGGGGCACTACCTATTCAACGACGAGAATACAGACGGGTGTATGATTGTTTAG

mRNA sequence

ATGGATATAGAAGCAGGATTCGTAAAAATCAGTGGAGGAAACAACTTGGATCCATCAATTTTGGTAAAAACAATTGCAAAAGCTGGCAAAAAAGCACAATTTCCGGCCATGGAGAATGCGGCAACGGCACCGGCACCGATTGGCCAAAAAGCACAATTTCCGACCATGGAGAATACGGCACAGGCACCGGCACCGGCACCGCTGGGCAAAAAATCACAATTTCCGGCCATGAAGAATACGGCACCGGCGCCGGCGGCCACCATTGACATTGTTTCGGATCATCATAACAGACCTTCCATTAATTCAGACAATCGCTGCCACAAAATTGACAGGACTAAATATGGCAATTCCGACTCTAGCCATTTTTCCGACCACCATGGCTGTTCCGACAAGGTTCACATCAACGAGGCGGCCGCCGTCAATCCGCCAGTGGCTTTGCCATTCCACAACCAGCAGTTTATGCGGCCGGTGTCGCAATATGGAGGTGTGGGTTTTCGGGGAAGTCATGGTTCTTGGCCTCGAATGTCGGAATCGATGTCGCCACCGCCGCCGATGCCACCAATGTCACCGGCACATAGATATTATCGGTGGTCGGAACCCCTACCTTATTATTTGCAGGAGCAACCGCCACCGGTGGGGAATGCGCCGGGGCACTACCTATTCAACGACGAGAATACAGACGGGTGTATGATTGTTTAG

Coding sequence (CDS)

ATGGATATAGAAGCAGGATTCGTAAAAATCAGTGGAGGAAACAACTTGGATCCATCAATTTTGGTAAAAACAATTGCAAAAGCTGGCAAAAAAGCACAATTTCCGGCCATGGAGAATGCGGCAACGGCACCGGCACCGATTGGCCAAAAAGCACAATTTCCGACCATGGAGAATACGGCACAGGCACCGGCACCGGCACCGCTGGGCAAAAAATCACAATTTCCGGCCATGAAGAATACGGCACCGGCGCCGGCGGCCACCATTGACATTGTTTCGGATCATCATAACAGACCTTCCATTAATTCAGACAATCGCTGCCACAAAATTGACAGGACTAAATATGGCAATTCCGACTCTAGCCATTTTTCCGACCACCATGGCTGTTCCGACAAGGTTCACATCAACGAGGCGGCCGCCGTCAATCCGCCAGTGGCTTTGCCATTCCACAACCAGCAGTTTATGCGGCCGGTGTCGCAATATGGAGGTGTGGGTTTTCGGGGAAGTCATGGTTCTTGGCCTCGAATGTCGGAATCGATGTCGCCACCGCCGCCGATGCCACCAATGTCACCGGCACATAGATATTATCGGTGGTCGGAACCCCTACCTTATTATTTGCAGGAGCAACCGCCACCGGTGGGGAATGCGCCGGGGCACTACCTATTCAACGACGAGAATACAGACGGGTGTATGATTGTTTAG

Protein sequence

MDIEAGFVKISGGNNLDPSILVKTIAKAGKKAQFPAMENAATAPAPIGQKAQFPTMENTAQAPAPAPLGKKSQFPAMKNTAPAPAATIDIVSDHHNRPSINSDNRCHKIDRTKYGNSDSSHFSDHHGCSDKVHINEAAAVNPPVALPFHNQQFMRPVSQYGGVGFRGSHGSWPRMSESMSPPPPMPPMSPAHRYYRWSEPLPYYLQEQPPPVGNAPGHYLFNDENTDGCMIV
BLAST of Cla014739 vs. TrEMBL
Match: A0A0A0K5U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G392360 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.3e-65
Identity = 140/244 (57.38%), Postives = 155/244 (63.52%), Query Frame = 1

Query: 1   MDIEAGFVKISGGNNLDPSILVKTIAKAGKKAQFPAMENAATAPAPIGQKAQFPTMENTA 60
           M+IE G VKISG  N DP I +KTI KAGKKAQFPAM+N A AP+PI Q  QFPT EN  
Sbjct: 12  MNIETGLVKISGEKNFDPFIFLKTITKAGKKAQFPAMQNTA-APSPIAQNPQFPTKENMT 71

Query: 61  QAPAPAPLGKKSQFPAMKNTAPAPAATIDIVSDH--HNRPSINSDNRCHKIDRTKYGNSD 120
            APAPAP    S                D  S H  H+  SINS+N C K D    GNSD
Sbjct: 72  SAPAPAPAATSS----------------DNASGHPIHHSHSINSNNHCCKSD----GNSD 131

Query: 121 SSHFSDHHGCSDKVHINEAAAVNPPVALPFHNQQFMRPVS---------QYGG-VGFRGS 180
           + +FSDH    DKVHINEAA+VNPPVALP HN+  MRP           QYG  +GFRGS
Sbjct: 132 AGNFSDHRSWPDKVHINEAASVNPPVALPLHNRMLMRPPMPSLRPPPPPQYGDHMGFRGS 191

Query: 181 HGSWPRMSESMSPPPPMPPMSPAHRYYRWSEPLPYYLQEQPPPVGNAPGHYLFNDENTDG 233
           HG WP MSE  S P   PP    H YYRW EP+PYYLQEQ PPVGN P HY+FNDENT+G
Sbjct: 192 HGFWPGMSEPWSSPSHPPP---PHSYYRWPEPVPYYLQEQQPPVGNTPNHYVFNDENTEG 231

BLAST of Cla014739 vs. NCBI nr
Match: gi|700189630|gb|KGN44863.1| (hypothetical protein Csa_7G392360 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 3.3e-65
Identity = 140/244 (57.38%), Postives = 155/244 (63.52%), Query Frame = 1

Query: 1   MDIEAGFVKISGGNNLDPSILVKTIAKAGKKAQFPAMENAATAPAPIGQKAQFPTMENTA 60
           M+IE G VKISG  N DP I +KTI KAGKKAQFPAM+N A AP+PI Q  QFPT EN  
Sbjct: 12  MNIETGLVKISGEKNFDPFIFLKTITKAGKKAQFPAMQNTA-APSPIAQNPQFPTKENMT 71

Query: 61  QAPAPAPLGKKSQFPAMKNTAPAPAATIDIVSDH--HNRPSINSDNRCHKIDRTKYGNSD 120
            APAPAP    S                D  S H  H+  SINS+N C K D    GNSD
Sbjct: 72  SAPAPAPAATSS----------------DNASGHPIHHSHSINSNNHCCKSD----GNSD 131

Query: 121 SSHFSDHHGCSDKVHINEAAAVNPPVALPFHNQQFMRPVS---------QYGG-VGFRGS 180
           + +FSDH    DKVHINEAA+VNPPVALP HN+  MRP           QYG  +GFRGS
Sbjct: 132 AGNFSDHRSWPDKVHINEAASVNPPVALPLHNRMLMRPPMPSLRPPPPPQYGDHMGFRGS 191

Query: 181 HGSWPRMSESMSPPPPMPPMSPAHRYYRWSEPLPYYLQEQPPPVGNAPGHYLFNDENTDG 233
           HG WP MSE  S P   PP    H YYRW EP+PYYLQEQ PPVGN P HY+FNDENT+G
Sbjct: 192 HGFWPGMSEPWSSPSHPPP---PHSYYRWPEPVPYYLQEQQPPVGNTPNHYVFNDENTEG 231

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K5U2_CUCSA2.3e-6557.38Uncharacterized protein OS=Cucumis sativus GN=Csa_7G392360 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700189630|gb|KGN44863.1|3.3e-6557.38hypothetical protein Csa_7G392360 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006412 translation
biological_process GO:0030001 metal ion transport
biological_process GO:0046916 cellular transition metal ion homeostasis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0009506 plasmodesma
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0046914 transition metal ion binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU20836watermelon unigene v2 vs TrEMBLtranscribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla014739Cla014739.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU20836WMU20836transcribed_cluster


The following gene(s) are paralogous to this gene:

None