ClCG09G006840 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG09G006840
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr09 : 5920755 .. 5921486 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAATGAAGGAGTTGTTTCCATAGACATGGATATAGAAGCAGGATTCGTAAAAATCAGTGGAGGAAACAACTTGGATCCATCAATTTTGGTAAAAACAATTGCAAAAGCTGGCAAAAAAGCACAATTTCCGGCCATGGAGAATGCGGCAACGGCACCGGCACCGATTGGCCAAAAAGCACAATTTCCGACCATGGAGAATACGGCACAGGCACCGGCACCGGCACCGCTGGGCAAAAAATCACAATTTCCGGCCATGAAGAATACGGCACCGGCGCCGGCGGCCACCATTGACATTGTTTCGGATCATCATAACAGACCTTCCATTAATTCAGACAATCGCTGCCACAAAATTGACAGGACTAAATATGGCAATTCCGACTCTAGCCATTTTTCCGACCACCATGGCTGTTCCGACAAGGTTCACATCAACGAGGCGGCCGCCGTCAATCCGCCAGTGGCTTTGCCATTCCACAACCAGCAGTTTATGCGGCCGGTGTCGCAATATGGAGGTGTGGGTTTTCGGGGAAGTCATGGTTCTTGGCCTCGAATGTCGGAATCGATGTCGCCACCGCCGCCGATGCCACCAATGTCACCGGCACATAGATATTATCGGTGGTCGGAACCCCTACCTTATTATTTGCAGGAGCAACCGCCACCGGTGGGGAATGCGCCGGGGCACTACCTATTCAACGACGAGAATACAGACGGGTGTATGATTGTTTAG

mRNA sequence

ATGGCTTCCAATGAAGGAGTTGTTTCCATAGACATGGATATAGAAGCAGGATTCGTAAAAATCAGTGGAGGAAACAACTTGGATCCATCAATTTTGGTAAAAACAATTGCAAAAGCTGGCAAAAAAGCACAATTTCCGGCCATGGAGAATGCGGCAACGGCACCGGCACCGATTGGCCAAAAAGCACAATTTCCGACCATGGAGAATACGGCACAGGCACCGGCACCGGCACCGCTGGGCAAAAAATCACAATTTCCGGCCATGAAGAATACGGCACCGGCGCCGGCGGCCACCATTGACATTGTTTCGGATCATCATAACAGACCTTCCATTAATTCAGACAATCGCTGCCACAAAATTGACAGGACTAAATATGGCAATTCCGACTCTAGCCATTTTTCCGACCACCATGGCTGTTCCGACAAGGTTCACATCAACGAGGCGGCCGCCGTCAATCCGCCAGTGGCTTTGCCATTCCACAACCAGCAGTTTATGCGGCCGGTGTCGCAATATGGAGGTGTGGGTTTTCGGGGAAGTCATGGTTCTTGGCCTCGAATGTCGGAATCGATGTCGCCACCGCCGCCGATGCCACCAATGTCACCGGCACATAGATATTATCGGTGGTCGGAACCCCTACCTTATTATTTGCAGGAGCAACCGCCACCGGTGGGGAATGCGCCGGGGCACTACCTATTCAACGACGAGAATACAGACGGGTGTATGATTGTTTAG

Coding sequence (CDS)

ATGGCTTCCAATGAAGGAGTTGTTTCCATAGACATGGATATAGAAGCAGGATTCGTAAAAATCAGTGGAGGAAACAACTTGGATCCATCAATTTTGGTAAAAACAATTGCAAAAGCTGGCAAAAAAGCACAATTTCCGGCCATGGAGAATGCGGCAACGGCACCGGCACCGATTGGCCAAAAAGCACAATTTCCGACCATGGAGAATACGGCACAGGCACCGGCACCGGCACCGCTGGGCAAAAAATCACAATTTCCGGCCATGAAGAATACGGCACCGGCGCCGGCGGCCACCATTGACATTGTTTCGGATCATCATAACAGACCTTCCATTAATTCAGACAATCGCTGCCACAAAATTGACAGGACTAAATATGGCAATTCCGACTCTAGCCATTTTTCCGACCACCATGGCTGTTCCGACAAGGTTCACATCAACGAGGCGGCCGCCGTCAATCCGCCAGTGGCTTTGCCATTCCACAACCAGCAGTTTATGCGGCCGGTGTCGCAATATGGAGGTGTGGGTTTTCGGGGAAGTCATGGTTCTTGGCCTCGAATGTCGGAATCGATGTCGCCACCGCCGCCGATGCCACCAATGTCACCGGCACATAGATATTATCGGTGGTCGGAACCCCTACCTTATTATTTGCAGGAGCAACCGCCACCGGTGGGGAATGCGCCGGGGCACTACCTATTCAACGACGAGAATACAGACGGGTGTATGATTGTTTAG

Protein sequence

MASNEGVVSIDMDIEAGFVKISGGNNLDPSILVKTIAKAGKKAQFPAMENAATAPAPIGQKAQFPTMENTAQAPAPAPLGKKSQFPAMKNTAPAPAATIDIVSDHHNRPSINSDNRCHKIDRTKYGNSDSSHFSDHHGCSDKVHINEAAAVNPPVALPFHNQQFMRPVSQYGGVGFRGSHGSWPRMSESMSPPPPMPPMSPAHRYYRWSEPLPYYLQEQPPPVGNAPGHYLFNDENTDGCMIV

Homology

[Close]

BLAST of ClCG09G006840 vs. TrEMBL
Match: A0A0A0K5U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G392360 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.5e-70
Identity = 148/255 (58.04%), Postives = 165/255 (64.71%), Query Frame = 1


Query: 1   MASNEGVVSIDMDIEAGFVKISGGNNLDPSILVKTIAKAGKKAQFPAMENAATAPAPIGQ 60
           MASNEGV S++M+IE G VKISG  N DP I +KTI KAGKKAQFPAM+N A AP+PI Q
Sbjct: 1   MASNEGVTSVEMNIETGLVKISGEKNFDPFIFLKTITKAGKKAQFPAMQNTA-APSPIAQ 60

Query: 61  KAQFPTMENTAQAPAPAPLGKKSQFPAMKNTAPAPAATIDIVSDH--HNRPSINSDNRCH 120
             QFPT EN   APAPAP    S                D  S H  H+  SINS+N C 
Sbjct: 61  NPQFPTKENMTSAPAPAPAATSS----------------DNASGHPIHHSHSINSNNHCC 120

Query: 121 KIDRTKYGNSDSSHFSDHHGCSDKVHINEAAAVNPPVALPFHNQQFMRPVS--------- 180
           K D    GNSD+ +FSDH    DKVHINEAA+VNPPVALP HN+  MRP           
Sbjct: 121 KSD----GNSDAGNFSDHRSWPDKVHINEAASVNPPVALPLHNRMLMRPPMPSLRPPPPP 180

Query: 181 QYGG-VGFRGSHGSWPRMSESMSPPPPMPPMSPAHRYYRWSEPLPYYLQEQPPPVGNAPG 240
           QYG  +GFRGSHG WP MSE  S P   PP    H YYRW EP+PYYLQEQ PPVGN P 
Sbjct: 181 QYGDHMGFRGSHGFWPGMSEPWSSPSHPPP---PHSYYRWPEPVPYYLQEQQPPVGNTPN 231

Query: 241 HYLFNDENTDGCMIV 244
           HY+FNDENT+GC+IV
Sbjct: 241 HYVFNDENTEGCIIV 231

[Close]

BLAST of ClCG09G006840 vs. NCBI nr
Match: gi|700189630|gb|KGN44863.1| (hypothetical protein Csa_7G392360 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 3.6e-70
Identity = 148/255 (58.04%), Postives = 165/255 (64.71%), Query Frame = 1


Query: 1   MASNEGVVSIDMDIEAGFVKISGGNNLDPSILVKTIAKAGKKAQFPAMENAATAPAPIGQ 60
           MASNEGV S++M+IE G VKISG  N DP I +KTI KAGKKAQFPAM+N A AP+PI Q
Sbjct: 1   MASNEGVTSVEMNIETGLVKISGEKNFDPFIFLKTITKAGKKAQFPAMQNTA-APSPIAQ 60

Query: 61  KAQFPTMENTAQAPAPAPLGKKSQFPAMKNTAPAPAATIDIVSDH--HNRPSINSDNRCH 120
             QFPT EN   APAPAP    S                D  S H  H+  SINS+N C 
Sbjct: 61  NPQFPTKENMTSAPAPAPAATSS----------------DNASGHPIHHSHSINSNNHCC 120

Query: 121 KIDRTKYGNSDSSHFSDHHGCSDKVHINEAAAVNPPVALPFHNQQFMRPVS--------- 180
           K D    GNSD+ +FSDH    DKVHINEAA+VNPPVALP HN+  MRP           
Sbjct: 121 KSD----GNSDAGNFSDHRSWPDKVHINEAASVNPPVALPLHNRMLMRPPMPSLRPPPPP 180

Query: 181 QYGG-VGFRGSHGSWPRMSESMSPPPPMPPMSPAHRYYRWSEPLPYYLQEQPPPVGNAPG 240
           QYG  +GFRGSHG WP MSE  S P   PP    H YYRW EP+PYYLQEQ PPVGN P 
Sbjct: 181 QYGDHMGFRGSHGFWPGMSEPWSSPSHPPP---PHSYYRWPEPVPYYLQEQQPPVGNTPN 231

Query: 241 HYLFNDENTDGCMIV 244
           HY+FNDENT+GC+IV
Sbjct: 241 HYVFNDENTEGCIIV 231

The following BLAST results are available for this feature:

BLAST of ClCG09G006840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5U2_CUCSA	2.5e-70	58.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G392360 PE=4 SV=1	[more]

BLAST of ClCG09G006840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189630\|gb\|KGN44863.1\|	3.6e-70	58.04	hypothetical protein Csa_7G392360 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0030001	metal ion transport
biological_process	GO:0046916	cellular transition metal ion homeostasis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046914	transition metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G006840.1	ClCG09G006840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.70.100		coord: 5..44 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG09G006840	Csa7G392360	Cucumber (Chinese Long) v2	cuwcgB517
ClCG09G006840	MELO3C015863	Melon (DHL92) v3.5.1	mewcgB175
ClCG09G006840	Cla014739	Watermelon (97103) v1	wcgwmB007
ClCG09G006840	Cla97C09G169410	Watermelon (97103) v2	wcgwmbB035
ClCG09G006840	CSPI07G16790	Wild cucumber (PI 183967)	cpiwcgB544
ClCG09G006840	CmoCh08G003580	Cucurbita moschata (Rifu)	cmowcgB785
ClCG09G006840	Lsi02G023140	Bottle gourd (USVL1VR-Ls)	lsiwcgB159
ClCG09G006840	MELO3C015863.2	Melon (DHL92) v3.6.1	medwcgB170
ClCG09G006840	CsaV3_7G028560	Cucumber (Chinese Long) v3	cucwcgB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG09G006840	Wax gourd	wcgwgoB062
ClCG09G006840	Cucumber (Gy14) v1	cgywcgB090
ClCG09G006840	Cucumber (Gy14) v1	cgywcgB091
ClCG09G006840	Cucumber (Gy14) v1	cgywcgB442
ClCG09G006840	Cucurbita maxima (Rimu)	cmawcgB215
ClCG09G006840	Cucurbita maxima (Rimu)	cmawcgB306
ClCG09G006840	Cucurbita maxima (Rimu)	cmawcgB717
ClCG09G006840	Cucurbita maxima (Rimu)	cmawcgB786
ClCG09G006840	Cucurbita moschata (Rifu)	cmowcgB299
ClCG09G006840	Cucurbita moschata (Rifu)	cmowcgB721
ClCG09G006840	Wild cucumber (PI 183967)	cpiwcgB185
ClCG09G006840	Melon (DHL92) v3.5.1	mewcgB411
ClCG09G006840	Cucurbita pepo (Zucchini)	cpewcgB126
ClCG09G006840	Cucurbita pepo (Zucchini)	cpewcgB280
ClCG09G006840	Cucurbita pepo (Zucchini)	cpewcgB539
ClCG09G006840	Cucurbita pepo (Zucchini)	cpewcgB762
ClCG09G006840	Cucumber (Gy14) v2	cgybwcgB169
ClCG09G006840	Cucumber (Gy14) v2	cgybwcgB476
ClCG09G006840	Melon (DHL92) v3.6.1	medwcgB400
ClCG09G006840	Silver-seed gourd	carwcgB0108
ClCG09G006840	Silver-seed gourd	carwcgB0833
ClCG09G006840	Cucumber (Chinese Long) v3	cucwcgB189