MELO3C015863.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015863.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Heavy metal-associated isoprenylated plant protein 34
Location	chr01 : 31140848 .. 31141576 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAATGAAGGAGTTACATCGGTAGAGATGAATATACAAACAGGATTGGTAAAAATCAGTGGAGAAAGCAACTTCGATCCATCAATCTTTGTCAAAACAATTGCAAAAACCGGCAAAAAAGCTCAATTTCCGGCCACGGAGAACAGCGCACCGGCACCCACACCCACGGCCACACCGATAGGCCAAAACCCACAATTTCCGACCCGGGAGAATATGACCTCGGCACCGGCGGCTACCAGTGACAATGCTTCGGGTCATCATGTTCGTAACAAGAATTCTATTAATTCAAACAATCACTGTTGCAAAAGCGAAAGGACGACCCACTATGGAAATTCTGACGCCGGTAATTTTTCCGACCACCGTAGCCGGTCCGACAAGGTTCACATAAACGAGGCGGCAGCCGTCAATCCGCCAGTGCCTCTGCCACTTCCCAACCGAATGTTTATGCGACCGCCGATGTCATCACCGCGCCTGCCACCGCCTCCGCAATATGGAGATATGAGTTTTCGTGGAAGTCATGGTTTTTGGCCCGGAATGTCGGAACCATGGTCGTCAGCGTCACCCCCACCGCCGCCGATGACAGCAATGGCACCGCCGCATAGCTATTATCGGTGGCCGGAACCCGTACCTTACTATTTGCAAGAGCAACAGCCACCGGTGGGGAATACGCCGAGCCACTACCTATTCAACGACGAGAATACAGAAGGGTGTGTTATTATTTAG

mRNA sequence

ATGGCTTCCAATGAAGGAGTTACATCGGTAGAGATGAATATACAAACAGGATTGGTAAAAATCAGTGGAGAAAGCAACTTCGATCCATCAATCTTTGTCAAAACAATTGCAAAAACCGGCAAAAAAGCTCAATTTCCGGCCACGGAGAACAGCGCACCGGCACCCACACCCACGGCCACACCGATAGGCCAAAACCCACAATTTCCGACCCGGGAGAATATGACCTCGGCACCGGCGGCTACCAGTGACAATGCTTCGGGTCATCATGTTCGTAACAAGAATTCTATTAATTCAAACAATCACTGTTGCAAAAGCGAAAGGACGACCCACTATGGAAATTCTGACGCCGGTAATTTTTCCGACCACCGTAGCCGGTCCGACAAGGTTCACATAAACGAGGCGGCAGCCGTCAATCCGCCAGTGCCTCTGCCACTTCCCAACCGAATGTTTATGCGACCGCCGATGTCATCACCGCGCCTGCCACCGCCTCCGCAATATGGAGATATGAGTTTTCGTGGAAGTCATGGTTTTTGGCCCGGAATGTCGGAACCATGGTCGTCAGCGTCACCCCCACCGCCGCCGATGACAGCAATGGCACCGCCGCATAGCTATTATCGGTGGCCGGAACCCGTACCTTACTATTTGCAAGAGCAACAGCCACCGGTGGGGAATACGCCGAGCCACTACCTATTCAACGACGAGAATACAGAAGGGTGTGTTATTATTTAG

Coding sequence (CDS)

ATGGCTTCCAATGAAGGAGTTACATCGGTAGAGATGAATATACAAACAGGATTGGTAAAAATCAGTGGAGAAAGCAACTTCGATCCATCAATCTTTGTCAAAACAATTGCAAAAACCGGCAAAAAAGCTCAATTTCCGGCCACGGAGAACAGCGCACCGGCACCCACACCCACGGCCACACCGATAGGCCAAAACCCACAATTTCCGACCCGGGAGAATATGACCTCGGCACCGGCGGCTACCAGTGACAATGCTTCGGGTCATCATGTTCGTAACAAGAATTCTATTAATTCAAACAATCACTGTTGCAAAAGCGAAAGGACGACCCACTATGGAAATTCTGACGCCGGTAATTTTTCCGACCACCGTAGCCGGTCCGACAAGGTTCACATAAACGAGGCGGCAGCCGTCAATCCGCCAGTGCCTCTGCCACTTCCCAACCGAATGTTTATGCGACCGCCGATGTCATCACCGCGCCTGCCACCGCCTCCGCAATATGGAGATATGAGTTTTCGTGGAAGTCATGGTTTTTGGCCCGGAATGTCGGAACCATGGTCGTCAGCGTCACCCCCACCGCCGCCGATGACAGCAATGGCACCGCCGCATAGCTATTATCGGTGGCCGGAACCCGTACCTTACTATTTGCAAGAGCAACAGCCACCGGTGGGGAATACGCCGAGCCACTACCTATTCAACGACGAGAATACAGAAGGGTGTGTTATTATTTAG

Protein sequence

MASNEGVTSVEMNIQTGLVKISGESNFDPSIFVKTIAKTGKKAQFPATENSAPAPTPTATPIGQNPQFPTRENMTSAPAATSDNASGHHVRNKNSINSNNHCCKSERTTHYGNSDAGNFSDHRSRSDKVHINEAAAVNPPVPLPLPNRMFMRPPMSSPRLPPPPQYGDMSFRGSHGFWPGMSEPWSSASPPPPPMTAMAPPHSYYRWPEPVPYYLQEQQPPVGNTPSHYLFNDENTEGCVII

Homology

[Close]

BLAST of MELO3C015863.2 vs. NCBI nr
Match: KGN44863.1 (hypothetical protein Csa_7G392360 [Cucumis sativus])

HSP 1 Score: 308.1 bits (788), Expect = 2.6e-80
Identity = 173/244 (70.90%), Postives = 187/244 (76.64%), Query Frame = 0


Query: 1   MASNEGVTSVEMNIQTGLVKISGESNFDPSIFVKTIAKTGKKAQFPATENSAPAPTP-XX 60
           MASNEGVTSVEMNI+TGLVKISGE NFDP IF+KTI K GKKAQFPA +N+A AP+P   
Sbjct: 1   MASNEGVTSVEMNIETGLVKISGEKNFDPFIFLKTITKAGKKAQFPAMQNTA-APSPIAQ 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXDNASGHHVRNKNSINSNNHCCKSERTTHYGNSDAGNF 120
                         XXXXXXXX DNASGH + + +SINSNNHCCKS+     GNSDAGNF
Sbjct: 61  NPQFPTKENMTSAPXXXXXXXXSDNASGHPIHHSHSINSNNHCCKSD-----GNSDAGNF 120

Query: 121 SDHRSRSDKVHINEAAAVNPPVPLPLPNRMFMRPPMSSPRLPPPPQYGD-MSFRGSHGFW 180
           SDHRS  DKVHINEAA+VNPPV LPL NRM MRPPM S R PPPPQYGD M FRGSHGFW
Sbjct: 121 SDHRSWPDKVHINEAASVNPPVALPLHNRMLMRPPMPSLRPPPPPQYGDHMGFRGSHGFW 180

Query: 181 PGMSEPWSSXXXXXXXXXXXXXXXSYYRWPEPVPYYLQEQQPPVGNTPSHYLFNDENTEG 240
           PGMSEPWSS               SYYRWPEPVPYYLQEQQPPVGNTP+HY+FNDENTEG
Sbjct: 181 PGMSEPWSS-------PSHPPPPHSYYRWPEPVPYYLQEQQPPVGNTPNHYVFNDENTEG 231

Query: 241 CVII 243
           C+I+
Sbjct: 241 CIIV 231

[Close]

BLAST of MELO3C015863.2 vs. TrEMBL
Match: tr|A0A0A0K5U2|A0A0A0K5U2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392360 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.7e-80
Identity = 173/244 (70.90%), Postives = 187/244 (76.64%), Query Frame = 0


Query: 1   MASNEGVTSVEMNIQTGLVKISGESNFDPSIFVKTIAKTGKKAQFPATENSAPAPTP-XX 60
           MASNEGVTSVEMNI+TGLVKISGE NFDP IF+KTI K GKKAQFPA +N+A AP+P   
Sbjct: 1   MASNEGVTSVEMNIETGLVKISGEKNFDPFIFLKTITKAGKKAQFPAMQNTA-APSPIAQ 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXDNASGHHVRNKNSINSNNHCCKSERTTHYGNSDAGNF 120
                         XXXXXXXX DNASGH + + +SINSNNHCCKS+     GNSDAGNF
Sbjct: 61  NPQFPTKENMTSAPXXXXXXXXSDNASGHPIHHSHSINSNNHCCKSD-----GNSDAGNF 120

Query: 121 SDHRSRSDKVHINEAAAVNPPVPLPLPNRMFMRPPMSSPRLPPPPQYGD-MSFRGSHGFW 180
           SDHRS  DKVHINEAA+VNPPV LPL NRM MRPPM S R PPPPQYGD M FRGSHGFW
Sbjct: 121 SDHRSWPDKVHINEAASVNPPVALPLHNRMLMRPPMPSLRPPPPPQYGDHMGFRGSHGFW 180

Query: 181 PGMSEPWSSXXXXXXXXXXXXXXXSYYRWPEPVPYYLQEQQPPVGNTPSHYLFNDENTEG 240
           PGMSEPWSS               SYYRWPEPVPYYLQEQQPPVGNTP+HY+FNDENTEG
Sbjct: 181 PGMSEPWSS-------PSHPPPPHSYYRWPEPVPYYLQEQQPPVGNTPNHYVFNDENTEG 231

Query: 241 CVII 243
           C+I+
Sbjct: 241 CIIV 231

The following BLAST results are available for this feature:

BLAST of MELO3C015863.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44863.1	2.6e-80	70.90	hypothetical protein Csa_7G392360 [Cucumis sativus]	[more]

BLAST of MELO3C015863.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C015863.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C015863.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5U2\|A0A0A0K5U2_CUCSA	1.7e-80	70.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392360 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0030001	metal ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR006121	HMA_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046916	cellular transition metal ion homeostasis
biological_process	GO:0030001	metal ion transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046914	transition metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015863.2.1	MELO3C015863.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..101
IPR006121	Heavy metal-associated domain, HMA	CDD	cd00371	HMA	coord: 5..43 e-value: 5.48689E-5 score: 38.7409

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015863.2	Csa7G392360	Cucumber (Chinese Long) v2	cumedB514
MELO3C015863.2	CSPI07G16790	Wild cucumber (PI 183967)	cpimedB528
MELO3C015863.2	Lsi02G023140	Bottle gourd (USVL1VR-Ls)	lsimedB195
MELO3C015863.2	Cla014739	Watermelon (97103) v1	medwmB195
MELO3C015863.2	ClCG09G006840	Watermelon (Charleston Gray)	medwcgB170
MELO3C015863.2	Cla97C09G169410	Watermelon (97103) v2	medwmbB208
MELO3C015863.2	Bhi09G000843	Wax gourd	medwgoB255
MELO3C015863.2	CsaV3_7G028560	Cucumber (Chinese Long) v3	cucmedB541

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015863.2	Cucumber (Gy14) v2	cgybmedB470
MELO3C015863.2	Cucumber (Gy14) v1	cgymedB092
MELO3C015863.2	Cucurbita maxima (Rimu)	cmamedB380
MELO3C015863.2	Cucurbita maxima (Rimu)	cmamedB923
MELO3C015863.2	Cucurbita moschata (Rifu)	cmomedB366
MELO3C015863.2	Cucurbita moschata (Rifu)	cmomedB912
MELO3C015863.2	Cucurbita pepo (Zucchini)	cpemedB151
MELO3C015863.2	Cucurbita pepo (Zucchini)	cpemedB348
MELO3C015863.2	Wild cucumber (PI 183967)	cpimedB176
MELO3C015863.2	Cucumber (Chinese Long) v2	cumedB177
MELO3C015863.2	Melon (DHL92) v3.6.1	medmedB092
MELO3C015863.2	Watermelon (97103) v1	medwmB228
MELO3C015863.2	Silver-seed gourd	carmedB0115
MELO3C015863.2	Silver-seed gourd	carmedB0860
MELO3C015863.2	Cucumber (Chinese Long) v3	cucmedB179