Cla013632 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013632
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	SigA binding protein (AHRD V1 ***- Q9LDH1_ARATH); contains Interpro domain(s) IPR008889 VQ
Location	Chr2 : 27288039 .. 27288452 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATCTTACAAGCCTTCCTAGTAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGTGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAATCACTTCAAGAGTTTAACCAAGTTTTTTATCCCCCGACGTCGTCCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTGCTATGCTTTTTCGTCCACCGGTCATGTCTTTGATCCAACCGGAGTCGCCGAAGGCCATTATTGGCGGGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA

mRNA sequence

ATGGAGAATCTTACAAGCCTTCCTAGTAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGTGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAATCACTTCAAGAGTTTAACCAAGTTTTTTATCCCCCGACGTCGTCCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTGCTATGCTTTTTCGTCCACCGGTCATGTCTTTGATCCAACCGGAGTCGCCGAAGGCCATTATTGGCGGGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA

Coding sequence (CDS)

ATGGAGAATCTTACAAGCCTTCCTAGTAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGTGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAATCACTTCAAGAGTTTAACCAAGTTTTTTATCCCCCGACGTCGTCCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTGCTATGCTTTTTCGTCCACCGGTCATGTCTTTGATCCAACCGGAGTCGCCGAAGGCCATTATTGGCGGGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA

Protein sequence

MENLTSLPSNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDCYAFSSTGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW

Homology

[Close]

BLAST of Cla013632 vs. Swiss-Prot
Match: SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 44/125 (35.20%), Postives = 60/125 (48.00%), Query Frame = 1


Query: 22  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS---SPDDAFHQSLQEFNQV 81
           K T   NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ +    P+  +  S  + N  
Sbjct: 31  KKTTSTNKPIKVRYISNPMRVQ-TCASKFRELVQELTGQDAVDLQPEPIYSPSSDDHN-- 90

Query: 82  FYPPTSSLA--VASFDP-----KDCYAFSSTGHVFDPTGVAEGHYWRGEMEGSFSGFQAS 137
             PP  +LA  V   +P      DCY         +P   AE  +   +M   FSGF ++
Sbjct: 91  LSPPAENLAPRVLHQEPFGERDSDCY---------EPLN-AEDMFLPDQMSAGFSGFFSN 142

[Close]

BLAST of Cla013632 vs. TrEMBL
Match: A0A0A0LFF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010160 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.5e-43
Identity = 102/142 (71.83%), Postives = 111/142 (78.17%), Query Frame = 1


Query: 1   MENLTSLPSNPDHQKITQIPNKPTID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MEN T+LPSN  H+K++Q+ NK TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTG
Sbjct: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60

Query: 61  QHSSPDDAFHQSLQEFNQVFY-PPTSSLAVASFDPKDCYAFSSTGHV-FDPTGVA-EGHY 120
           QHS   D   QS+Q+FN VFY PP SS    SFDPKDCY  S++G V FD      EG Y
Sbjct: 61  QHSPDHD--DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRY 120

Query: 121 WRGEME-GSFSGFQASSCVNIW 138
           WRGEME GSFSGFQASSCVNIW
Sbjct: 121 WRGEMELGSFSGFQASSCVNIW 140

[Close]

BLAST of Cla013632 vs. TrEMBL
Match: W9RT96_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024544 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-10
Identity = 56/141 (39.72%), Postives = 73/141 (51.77%), Query Frame = 1


Query: 22  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSS----PDDAFH-QSLQEFN 81
           +P+  + KPIK+KYISSPMMV+ANN SEFRAIVQ+LTG++S+     DD  H +SL    
Sbjct: 23  QPSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSNYTDLYDDVHHDESLNRTT 82

Query: 82  QVF----------------YPPTSSLAVASFDPKDCYAFSSTGHVFDPTGVA-------E 135
            +F                Y P  S   A  D +D       G  F    V+        
Sbjct: 83  TIFSESDHDQPGWSQFSADYHPQGSDDHALVDDRD--HDHHVGGKFSNPNVSLLGQIDEL 142

[Close]

BLAST of Cla013632 vs. TrEMBL
Match: B9N9R4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s08310g PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 1


Query: 22 KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQ----SLQEFNQ 81
          KPT  + +P+K+ YISSP MVKA N SEFRAIVQ+LTG+ S  +D F      S +E NQ
Sbjct: 19 KPTKHKKEPVKITYISSPTMVKATNASEFRAIVQELTGKDSKVEDPFDAYSMISNEEANQ 78

Query: 82 VFYPPTSSLAVA 90
          V +  T    VA
Sbjct: 79 VPHYGTPQFNVA 90

[Close]

BLAST of Cla013632 vs. TrEMBL
Match: A0A0D2U3H7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G186400 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 46/107 (42.99%), Postives = 57/107 (53.27%), Query Frame = 1


Query: 30  PIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVA 89
           P+KVKYISSPMMVKA+N  EFRAIVQ+LTGQHS   +  +              ++   A
Sbjct: 19  PVKVKYISSPMMVKASNAEEFRAIVQELTGQHSDMGEPVN------------VVTTNTKA 78

Query: 90  SFDPK---DCYAFS-STGHVFDPTGVAEGHYWRGEMEGSFSGFQASS 133
             D +   D Y    S+  +FD     EG  WRG  E  F GFQ+ S
Sbjct: 79  KLDDRNWLDAYPDDMSSMELFD-----EGFVWRGVAENLF-GFQSPS 107

[Close]

BLAST of Cla013632 vs. TrEMBL
Match: A0A0A0LIA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010150 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-07
Identity = 41/123 (33.33%), Postives = 59/123 (47.97%), Query Frame = 1


Query: 9   SNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS------ 68
           +N +H +       PT  Q KPIKVKYISSPMM+KA+N  EFRAIVQ+LTG  S      
Sbjct: 10  TNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSNTPTRR 69

Query: 69  -----------SPDDAFHQSLQEFNQVFYPPTSSL-AVASFDPKDCYAFSSTGHVFDPTG 114
                      +P   FH    E   + +     + ++  FD + C+   +  ++  P  
Sbjct: 70  RNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQNNNNIL-PNN 129

[Close]

BLAST of Cla013632 vs. NCBI nr
Match: gi|700205661|gb|KGN60780.1| (hypothetical protein Csa_2G010160 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 3.6e-43
Identity = 102/142 (71.83%), Postives = 111/142 (78.17%), Query Frame = 1


Query: 1   MENLTSLPSNPDHQKITQIPNKPTID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MEN T+LPSN  H+K++Q+ NK TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTG
Sbjct: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60

Query: 61  QHSSPDDAFHQSLQEFNQVFY-PPTSSLAVASFDPKDCYAFSSTGHV-FDPTGVA-EGHY 120
           QHS   D   QS+Q+FN VFY PP SS    SFDPKDCY  S++G V FD      EG Y
Sbjct: 61  QHSPDHD--DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRY 120

Query: 121 WRGEME-GSFSGFQASSCVNIW 138
           WRGEME GSFSGFQASSCVNIW
Sbjct: 121 WRGEMELGSFSGFQASSCVNIW 140

[Close]

BLAST of Cla013632 vs. NCBI nr
Match: gi|703121161|ref|XP_010102262.1| (hypothetical protein L484_024544 [Morus notabilis])

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 56/141 (39.72%), Postives = 73/141 (51.77%), Query Frame = 1


Query: 22  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSS----PDDAFH-QSLQEFN 81
           +P+  + KPIK+KYISSPMMV+ANN SEFRAIVQ+LTG++S+     DD  H +SL    
Sbjct: 23  QPSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSNYTDLYDDVHHDESLNRTT 82

Query: 82  QVF----------------YPPTSSLAVASFDPKDCYAFSSTGHVFDPTGVA-------E 135
            +F                Y P  S   A  D +D       G  F    V+        
Sbjct: 83  TIFSESDHDQPGWSQFSADYHPQGSDDHALVDDRD--HDHHVGGKFSNPNVSLLGQIDEL 142

[Close]

BLAST of Cla013632 vs. NCBI nr
Match: gi|566194457|ref|XP_006377608.1| (hypothetical protein POPTR_0011s08310g [Populus trichocarpa])

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 1


Query: 22 KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQ----SLQEFNQ 81
          KPT  + +P+K+ YISSP MVKA N SEFRAIVQ+LTG+ S  +D F      S +E NQ
Sbjct: 19 KPTKHKKEPVKITYISSPTMVKATNASEFRAIVQELTGKDSKVEDPFDAYSMISNEEANQ 78

Query: 82 VFYPPTSSLAVA 90
          V +  T    VA
Sbjct: 79 VPHYGTPQFNVA 90

[Close]

BLAST of Cla013632 vs. NCBI nr
Match: gi|823261712|ref|XP_012463594.1| (PREDICTED: uncharacterized protein LOC105782992 [Gossypium raimondii])

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-07
Identity = 46/107 (42.99%), Postives = 57/107 (53.27%), Query Frame = 1


Query: 30  PIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVA 89
           P+KVKYISSPMMVKA+N  EFRAIVQ+LTGQHS   +  +              ++   A
Sbjct: 19  PVKVKYISSPMMVKASNAEEFRAIVQELTGQHSDMGEPVN------------VVTTNTKA 78

Query: 90  SFDPK---DCYAFS-STGHVFDPTGVAEGHYWRGEMEGSFSGFQASS 133
             D +   D Y    S+  +FD     EG  WRG  E  F GFQ+ S
Sbjct: 79  KLDDRNWLDAYPDDMSSMELFD-----EGFVWRGVAENLF-GFQSPS 107

[Close]

BLAST of Cla013632 vs. NCBI nr
Match: gi|700205660|gb|KGN60779.1| (hypothetical protein Csa_2G010150 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-07
Identity = 41/123 (33.33%), Postives = 59/123 (47.97%), Query Frame = 1


Query: 9   SNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS------ 68
           +N +H +       PT  Q KPIKVKYISSPMM+KA+N  EFRAIVQ+LTG  S      
Sbjct: 10  TNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSNTPTRR 69

Query: 69  -----------SPDDAFHQSLQEFNQVFYPPTSSL-AVASFDPKDCYAFSSTGHVFDPTG 114
                      +P   FH    E   + +     + ++  FD + C+   +  ++  P  
Sbjct: 70  RNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQNNNNIL-PNN 129

The following BLAST results are available for this feature:

BLAST of Cla013632 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SIB1_ARATH	1.2e-06	35.20	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE...	[more]

BLAST of Cla013632 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFF9_CUCSA	2.5e-43	71.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010160 PE=4 SV=1	[more]
W9RT96_9ROSA	2.2e-10	39.72	Uncharacterized protein OS=Morus notabilis GN=L484_024544 PE=4 SV=1	[more]
B9N9R4_POPTR	1.3e-07	51.39	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s08310g PE=4 SV=1	[more]
A0A0D2U3H7_GOSRA	1.7e-07	42.99	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G186400 PE=4 SV=1	[more]
A0A0A0LIA7_CUCSA	2.2e-07	33.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010150 PE=4 SV=1	[more]

BLAST of Cla013632 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205661\|gb\|KGN60780.1\|	3.6e-43	71.83	hypothetical protein Csa_2G010160 [Cucumis sativus]	[more]
gi\|703121161\|ref\|XP_010102262.1\|	3.1e-10	39.72	hypothetical protein L484_024544 [Morus notabilis]	[more]
gi\|566194457\|ref\|XP_006377608.1\|	1.9e-07	51.39	hypothetical protein POPTR_0011s08310g [Populus trichocarpa]	[more]
gi\|823261712\|ref\|XP_012463594.1\|	2.5e-07	42.99	PREDICTED: uncharacterized protein LOC105782992 [Gossypium raimondii]	[more]
gi\|700205660\|gb\|KGN60779.1\|	3.2e-07	33.33	hypothetical protein Csa_2G010150 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:0006952	defense response
biological_process	GO:0009816	defense response to bacterium, incompatible interaction
biological_process	GO:0051091	positive regulation of sequence-specific DNA binding transcription factor activity
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009536	plastid
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013632	Cla013632.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 36..64 score: 2.
None	No IPR available	PANTHER	PTHR33624	FAMILY NOT NAMED	coord: 22..85 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013632	Cla97C02G042630	Watermelon (97103) v2	wmwmbB316
Cla013632	Csa2G010160	Cucumber (Chinese Long) v2	cuwmB147
Cla013632	MELO3C004408	Melon (DHL92) v3.5.1	mewmB418
Cla013632	ClCG02G016900	Watermelon (Charleston Gray)	wcgwmB197
Cla013632	CSPI02G02690	Wild cucumber (PI 183967)	cpiwmB149
Cla013632	Cucsa.133030	Cucumber (Gy14) v1	cgywmB223
Cla013632	CmaCh12G011400	Cucurbita maxima (Rimu)	cmawmB170
Cla013632	CmoCh12G011610	Cucurbita moschata (Rifu)	cmowmB156
Cla013632	Lsi11G004180	Bottle gourd (USVL1VR-Ls)	lsiwmB107
Cla013632	Cp4.1LG07g09800	Cucurbita pepo (Zucchini)	cpewmB806
Cla013632	CsGy2G002790	Cucumber (Gy14) v2	cgybwmB140
Cla013632	MELO3C004408.2	Melon (DHL92) v3.6.1	medwmB407
Cla013632	CsaV3_2G003860	Cucumber (Chinese Long) v3	cucwmB159
Cla013632	BhiUN66G24	Wax gourd	wgowmB530

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013632	Cucurbita maxima (Rimu)	cmawmB764
Cla013632	Cucurbita moschata (Rifu)	cmowmB757
Cla013632	Cucurbita pepo (Zucchini)	cpewmB113
Cla013632	Silver-seed gourd	carwmB0242
Cla013632	Silver-seed gourd	carwmB1071
Cla013632	Wax gourd	wgowmB133
Cla013632	Watermelon (97103) v1	wmwmB133
Cla013632	Watermelon (97103) v1	wmwmB162