CSPI02G02690 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G02690
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 1867255 .. 1867748 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATATTATATATAGAACCCAATTCTTTGTTCAAAAGCAAGAGAGAGATATCTCTCTCTTTCTAACTCTCTCTAATGGGGAAGTGTGGAGAGAATCAATACACCAACCACAACCACAACCACAGCCAAAGCCAAAACCAAAACCCTACAAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTTGACTCCAATACTCCTACTCGCCGGAGGAACCAGAAATTGCTCTCCGACTGTGCCCGAACTCCATCTGCAATGTTTCATGCAGATCGTCATGAAATGGAAGTTTTGAAGTTCTCAGATGATCATCACATGGAGTCGCTCCTCCAATTTGATGGTCAAGGTTGTTTTGAAACACAGAATAATAACAATATTCTTCCCAACAACATTATGGAGTTTCAATCTTCTTGTTTTTTTCAATAG

mRNA sequence

ATGGGGAAGTGTGGAGAGAATCAATACACCAACCACAACCACAACCACAGCCAAAGCCAAAACCAAAACCCTACAAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTTGACTCCAATACTCCTACTCGCCGGAGGAACCAGAAATTGCTCTCCGACTGTGCCCGAACTCCATCTGCAATGTTTCATGCAGATCGTCATGAAATGGAAGTTTTGAAGTTCTCAGATGATCATCACATGGAGTCGCTCCTCCAATTTGATGGTCAAGGTTGTTTTGAAACACAGAATAATAACAATATTCTTCCCAACAACATTATGGAGTTTCAATCTTCTTGTTTTTTTCAATAG

Coding sequence (CDS)

ATGGGGAAGTGTGGAGAGAATCAATACACCAACCACAACCACAACCACAGCCAAAGCCAAAACCAAAACCCTACAAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTTGACTCCAATACTCCTACTCGCCGGAGGAACCAGAAATTGCTCTCCGACTGTGCCCGAACTCCATCTGCAATGTTTCATGCAGATCGTCATGAAATGGAAGTTTTGAAGTTCTCAGATGATCATCACATGGAGTCGCTCCTCCAATTTGATGGTCAAGGTTGTTTTGAAACACAGAATAATAACAATATTCTTCCCAACAACATTATGGAGTTTCAATCTTCTTGTTTTTTTCAATAG

Homology

[Close]

BLAST of CSPI02G02690 vs. TrEMBL
Match: A0A0A0LIA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010150 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-72
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 1


Query: 1   MGKCGENQYTNHNHNHSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60
           MGKCGENQYTNHNH+ SQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120
           FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 NNNILPNNIMEFQSSCFFQ 140
           NNNILPNNIMEFQSSCFFQ
Sbjct: 121 NNNILPNNIMEFQSSCFFQ 139

[Close]

BLAST of CSPI02G02690 vs. TrEMBL
Match: W9RT96_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024544 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1


Query: 5   GENQYTNHNHNHSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSN 64
           G +QY N+ H  SQ Q   P+K ++KPIK+KYISSPMM++A+NA EFRAIVQ+LTG +SN
Sbjct: 8   GNSQYQNNPHLRSQKQ---PSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSN 67

Query: 65  TPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHH 104
                 +        RT +    +D  +    +FS D+H
Sbjct: 68  YTDLYDDVHHDESLNRTTTIFSESDHDQPGWSQFSADYH 103

[Close]

BLAST of CSPI02G02690 vs. TrEMBL
Match: B9MUD7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01240g PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.7e-07
Identity = 28/44 (63.64%), Postives = 38/44 (86.36%), Query Frame = 1


Query: 20 QNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDS 64
          + +NPTK +++P+K+ YISSPMM+KA+NA EFR IVQ+LTG DS
Sbjct: 16 RGKNPTKHRKEPVKITYISSPMMVKATNASEFRVIVQELTGKDS 59

[Close]

BLAST of CSPI02G02690 vs. TrEMBL
Match: M5WL38_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017028mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.7e-07
Identity = 47/131 (35.88%), Postives = 68/131 (51.91%), Query Frame = 1


Query: 12  HNHNHSQS-QNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSNTPTRRR 71
           H+H+  QS Q++ PTK   K   +KYISSPMM++ASNA EFRAIVQQLTG DSN      
Sbjct: 8   HSHHQPQSDQSKKPTKA--KAPTIKYISSPMMVQASNASEFRAIVQQLTGQDSNIEVLDD 67

Query: 72  NQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQNNNNI---LPN 131
            Q    +     S+  H       V++FS+   +   +        +  + NN+   +  
Sbjct: 68  QQGTHDEQGSWVSSSNHEASKADRVMRFSEGPPLPVAV------LDQLSDENNLWEAVAE 127

Query: 132 NIMEFQSSCFF 139
           ++  FQS C +
Sbjct: 128 SLSAFQSPCVY 130

[Close]

BLAST of CSPI02G02690 vs. TrEMBL
Match: B9N9T7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s02290g PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1


Query: 20 QNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDS 64
          + Q  TK +R+PIK+KYISSP M+KA+NA EFRAIVQ+LTG DS
Sbjct: 17 KGQKSTKNKREPIKIKYISSPTMVKATNATEFRAIVQELTGKDS 60

[Close]

BLAST of CSPI02G02690 vs. NCBI nr
Match: gi|700205660|gb|KGN60779.1| (hypothetical protein Csa_2G010150 [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 1.7e-72
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 1


Query: 1   MGKCGENQYTNHNHNHSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60
           MGKCGENQYTNHNH+ SQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120
           FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 NNNILPNNIMEFQSSCFFQ 140
           NNNILPNNIMEFQSSCFFQ
Sbjct: 121 NNNILPNNIMEFQSSCFFQ 139

[Close]

BLAST of CSPI02G02690 vs. NCBI nr
Match: gi|703121161|ref|XP_010102262.1| (hypothetical protein L484_024544 [Morus notabilis])

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1


Query: 5   GENQYTNHNHNHSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSN 64
           G +QY N+ H  SQ Q   P+K ++KPIK+KYISSPMM++A+NA EFRAIVQ+LTG +SN
Sbjct: 8   GNSQYQNNPHLRSQKQ---PSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSN 67

Query: 65  TPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHH 104
                 +        RT +    +D  +    +FS D+H
Sbjct: 68  YTDLYDDVHHDESLNRTTTIFSESDHDQPGWSQFSADYH 103

[Close]

BLAST of CSPI02G02690 vs. NCBI nr
Match: gi|566146535|ref|XP_006368281.1| (hypothetical protein POPTR_0001s01240g [Populus trichocarpa])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 28/44 (63.64%), Postives = 38/44 (86.36%), Query Frame = 1


Query: 20 QNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDS 64
          + +NPTK +++P+K+ YISSPMM+KA+NA EFR IVQ+LTG DS
Sbjct: 16 RGKNPTKHRKEPVKITYISSPMMVKATNASEFRVIVQELTGKDS 59

[Close]

BLAST of CSPI02G02690 vs. NCBI nr
Match: gi|595831738|ref|XP_007206331.1| (hypothetical protein PRUPE_ppa017028mg [Prunus persica])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 47/131 (35.88%), Postives = 68/131 (51.91%), Query Frame = 1


Query: 12  HNHNHSQS-QNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSNTPTRRR 71
           H+H+  QS Q++ PTK   K   +KYISSPMM++ASNA EFRAIVQQLTG DSN      
Sbjct: 8   HSHHQPQSDQSKKPTKA--KAPTIKYISSPMMVQASNASEFRAIVQQLTGQDSNIEVLDD 67

Query: 72  NQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQNNNNI---LPN 131
            Q    +     S+  H       V++FS+   +   +        +  + NN+   +  
Sbjct: 68  QQGTHDEQGSWVSSSNHEASKADRVMRFSEGPPLPVAV------LDQLSDENNLWEAVAE 127

Query: 132 NIMEFQSSCFF 139
           ++  FQS C +
Sbjct: 128 SLSAFQSPCVY 130

[Close]

BLAST of CSPI02G02690 vs. NCBI nr
Match: gi|566224956|ref|XP_006370978.1| (hypothetical protein POPTR_0019s02310g [Populus trichocarpa])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1


Query: 20 QNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDS 64
          + Q  TK +R+PIK+KYISSP M+KA+NA EFRAIVQ+LTG DS
Sbjct: 17 KGQKSTKNKREPIKIKYISSPTMVKATNATEFRAIVQELTGKDS 60

The following BLAST results are available for this feature:

BLAST of CSPI02G02690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G02690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIA7_CUCSA	1.2e-72	98.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010150 PE=4 SV=1	[more]
W9RT96_9ROSA	1.1e-09	44.44	Uncharacterized protein OS=Morus notabilis GN=L484_024544 PE=4 SV=1	[more]
B9MUD7_POPTR	8.7e-07	63.64	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01240g PE=4 SV=1	[more]
M5WL38_PRUPE	8.7e-07	35.88	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017028mg PE=4 SV=1	[more]
B9N9T7_POPTR	1.1e-06	68.18	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s02290g PE=4 SV=1	[more]

BLAST of CSPI02G02690 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G02690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205660\|gb\|KGN60779.1\|	1.7e-72	98.56	hypothetical protein Csa_2G010150 [Cucumis sativus]	[more]
gi\|703121161\|ref\|XP_010102262.1\|	1.6e-09	44.44	hypothetical protein L484_024544 [Morus notabilis]	[more]
gi\|566146535\|ref\|XP_006368281.1\|	1.2e-06	63.64	hypothetical protein POPTR_0001s01240g [Populus trichocarpa]	[more]
gi\|595831738\|ref\|XP_007206331.1\|	1.2e-06	35.88	hypothetical protein PRUPE_ppa017028mg [Prunus persica]	[more]
gi\|566224956\|ref\|XP_006370978.1\|	1.6e-06	68.18	hypothetical protein POPTR_0019s02310g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G02690.1	CSPI02G02690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 37..64 score: 1.
None	No IPR available	PANTHER	PTHR33624	FAMILY NOT NAMED	coord: 14..64 score: 4.4
None	No IPR available	PANTHER	PTHR33624:SF3	SUBFAMILY NOT NAMED	coord: 14..64 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G02690	Cla013632	Watermelon (97103) v1	cpiwmB149
CSPI02G02690	Csa2G010150	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G02690	MELO3C004408	Melon (DHL92) v3.5.1	cpimeB139
CSPI02G02690	ClCG02G016900	Watermelon (Charleston Gray)	cpiwcgB128
CSPI02G02690	Lsi11G004170	Bottle gourd (USVL1VR-Ls)	cpilsiB096
CSPI02G02690	MELO3C004409.2	Melon (DHL92) v3.6.1	cpimedB132
CSPI02G02690	CsaV3_2G003860	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G02690	Cla97C02G042640	Watermelon (97103) v2	cpiwmbB120
CSPI02G02690	BhiUN66G24	Wax gourd	cpiwgoB195
CSPI02G02690	Cucsa.133030	Cucumber (Gy14) v1	cgycpiB187
CSPI02G02690	CmaCh05G012240	Cucurbita maxima (Rimu)	cmacpiB800
CSPI02G02690	CmoCh05G012520	Cucurbita moschata (Rifu)	cmocpiB787
CSPI02G02690	Cp4.1LG11g10000	Cucurbita pepo (Zucchini)	cpecpiB100
CSPI02G02690	CsGy2G002790	Cucumber (Gy14) v2	cgybcpiB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G02690	Melon (DHL92) v3.6.1	cpimedB138
CSPI02G02690	Cucumber (Gy14) v2	cgybcpiB103
CSPI02G02690	Silver-seed gourd	carcpiB0286
CSPI02G02690	Silver-seed gourd	carcpiB1109
CSPI02G02690	Cucumber (Chinese Long) v3	cpicucB092
CSPI02G02690	Watermelon (97103) v2	cpiwmbB136
CSPI02G02690	Wax gourd	cpiwgoB137
CSPI02G02690	Wild cucumber (PI 183967)	cpicpiB062
CSPI02G02690	Cucurbita maxima (Rimu)	cmacpiB174
CSPI02G02690	Cucurbita moschata (Rifu)	cmocpiB159
CSPI02G02690	Cucumber (Chinese Long) v2	cpicuB074
CSPI02G02690	Melon (DHL92) v3.5.1	cpimeB146
CSPI02G02690	Watermelon (97103) v1	cpiwmB127
CSPI02G02690	Cucurbita pepo (Zucchini)	cpecpiB821