Cp4.1LG11g10000 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g10000
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG11 : 8494716 .. 8495105 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGTGTGGAGAGAATGAATGGAAGGACCAAAAGCAGAGTCAAAATCCCACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGATCAAAGCAAGCAATGCACATGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCACCTCCCATTCTCCCACTCACCGGAGCAACCACAAACCACCGCCCCACGCCGCCCAAACTCCATCCACTTCAACGTTGCATGCAAATCCTCAAATGGAAGCCTTGAAGTTGTCGGACAACATGTCGTCGCTACTCGAGTTTGATGATGAAGCTTGTTTTGTAACACTTGATAATGTTCTTACCAACAACTTCATGGGATTTCAAGCTTCTTGCTTGTTTCAATAG

mRNA sequence

ATGGGGAAGTGTGGAGAGAATGAATGGAAGGACCAAAAGCAGAGTCAAAATCCCACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGATCAAAGCAAGCAATGCACATGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCACCTCCCATTCTCCCACTCACCGGAGCAACCACAAACCACCGCCCCACGCCGCCCAAACTCCATCCACTTCAACGTTGCATGCAAATCCTCAAATGGAAGCCTTGAAGTTGTCGGACAACATGTCGTCGCTACTCGAGTTTGATGATGAAGCTTGTTTTGTAACACTTGATAATGTTCTTACCAACAACTTCATGGGATTTCAAGCTTCTTGCTTGTTTCAATAG

Coding sequence (CDS)

ATGGGGAAGTGTGGAGAGAATGAATGGAAGGACCAAAAGCAGAGTCAAAATCCCACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGATCAAAGCAAGCAATGCACATGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCACCTCCCATTCTCCCACTCACCGGAGCAACCACAAACCACCGCCCCACGCCGCCCAAACTCCATCCACTTCAACGTTGCATGCAAATCCTCAAATGGAAGCCTTGAAGTTGTCGGACAACATGTCGTCGCTACTCGAGTTTGATGATGAAGCTTGTTTTGTAACACTTGATAATGTTCTTACCAACAACTTCATGGGATTTCAAGCTTCTTGCTTGTTTCAATAG

Protein sequence

MGKCGENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSHSPTHRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDNMSSLLEFDDEACFVTLDNVLTNNFMGFQASCLFQ

Homology

[Close]

BLAST of Cp4.1LG11g10000 vs. TrEMBL
Match: A0A0A0LIA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010150 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.6e-31
Identity = 84/139 (60.43%), Postives = 98/139 (70.50%), Query Frame = 1


Query: 1   MGKCGENEW------KDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTG 60
           MGKCGEN++      + Q Q+QNPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FTSHSPTHRSNHKPPPHAAQTPSTSTLHANPQMEALKLSD--NMSSLLEFDDEACFVTL- 120
           F S++PT R N K     A+TPS        +ME LK SD  +M SLL+FD + CF T  
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 -DNVLTNNFMGFQASCLFQ 130
            +N+L NN M FQ+SC FQ
Sbjct: 121 NNNILPNNIMEFQSSCFFQ 139

[Close]

BLAST of Cp4.1LG11g10000 vs. TrEMBL
Match: A0A061F1R9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026260 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-07
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1


Query: 14 QSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTS 58
          +S+NPTK ++ PIK+KYISSP M+ ASNA EFRAIVQ+LTG  S
Sbjct: 11 ESKNPTKAKKIPIKIKYISSPKMVNASNADEFRAIVQELTGRNS 54

[Close]

BLAST of Cp4.1LG11g10000 vs. TrEMBL
Match: A0A067DJ56_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031928mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.6e-07
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 1  MGKCG---ENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTS 60
          MGK G   +++  ++ Q     KV++ P+KV YISSPM +KASNA EFRAIVQ+LTG  S
Sbjct: 1  MGKFGHHFDHQGHNKSQRSGANKVKKNPLKVTYISSPMKVKASNASEFRAIVQELTGKNS 60

Query: 61 HSPTHRSNHKPPPHAAQTPSTSTLH 83
              H S+    PHA +    S  H
Sbjct: 61 EVKDHNSDDVVFPHAEEAKVFSHNH 85

[Close]

BLAST of Cp4.1LG11g10000 vs. TrEMBL
Match: V4VSD1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022688mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 1  MGKCG---ENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTS 60
          MGK G   +++  +Q Q     K ++ P+KV YISSPM +KASNA EFRAIVQ+LTG  S
Sbjct: 1  MGKFGHHFDHQGHNQSQRSGANKGKKNPLKVTYISSPMKVKASNASEFRAIVQELTGKNS 60

Query: 61 HSPTHRSNHKPPPHAAQTPSTSTLH 83
              H S+    PHA      S  H
Sbjct: 61 EVKDHNSDDAVFPHAEDAKVFSHNH 85

[Close]

BLAST of Cp4.1LG11g10000 vs. TrEMBL
Match: B9MUD7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01240g PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06
Identity = 26/45 (57.78%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 10 KDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTG 55
          ++ ++ +NPTK +++P+K+ YISSPMM+KA+NA EFR IVQ+LTG
Sbjct: 12 QEPRRGKNPTKHRKEPVKITYISSPMMVKATNASEFRVIVQELTG 56

[Close]

BLAST of Cp4.1LG11g10000 vs. NCBI nr
Match: gi|700205660|gb|KGN60779.1| (hypothetical protein Csa_2G010150 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 5.1e-31
Identity = 84/139 (60.43%), Postives = 98/139 (70.50%), Query Frame = 1


Query: 1   MGKCGENEW------KDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTG 60
           MGKCGEN++      + Q Q+QNPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FTSHSPTHRSNHKPPPHAAQTPSTSTLHANPQMEALKLSD--NMSSLLEFDDEACFVTL- 120
           F S++PT R N K     A+TPS        +ME LK SD  +M SLL+FD + CF T  
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 -DNVLTNNFMGFQASCLFQ 130
            +N+L NN M FQ+SC FQ
Sbjct: 121 NNNILPNNIMEFQSSCFFQ 139

[Close]

BLAST of Cp4.1LG11g10000 vs. NCBI nr
Match: gi|590642352|ref|XP_007030494.1| (Uncharacterized protein TCM_026260 [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-07
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1


Query: 14 QSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTS 58
          +S+NPTK ++ PIK+KYISSP M+ ASNA EFRAIVQ+LTG  S
Sbjct: 11 ESKNPTKAKKIPIKIKYISSPKMVNASNADEFRAIVQELTGRNS 54

[Close]

BLAST of Cp4.1LG11g10000 vs. NCBI nr
Match: gi|641823493|gb|KDO42898.1| (hypothetical protein CISIN_1g031928mg [Citrus sinensis])

HSP 1 Score: 62.8 bits (151), Expect = 5.2e-07
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 1  MGKCG---ENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTS 60
          MGK G   +++  ++ Q     KV++ P+KV YISSPM +KASNA EFRAIVQ+LTG  S
Sbjct: 1  MGKFGHHFDHQGHNKSQRSGANKVKKNPLKVTYISSPMKVKASNASEFRAIVQELTGKNS 60

Query: 61 HSPTHRSNHKPPPHAAQTPSTSTLH 83
              H S+    PHA +    S  H
Sbjct: 61 EVKDHNSDDVVFPHAEEAKVFSHNH 85

[Close]

BLAST of Cp4.1LG11g10000 vs. NCBI nr
Match: gi|567900532|ref|XP_006442754.1| (hypothetical protein CICLE_v10022688mg [Citrus clementina])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 1  MGKCG---ENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTS 60
          MGK G   +++  +Q Q     K ++ P+KV YISSPM +KASNA EFRAIVQ+LTG  S
Sbjct: 1  MGKFGHHFDHQGHNQSQRSGANKGKKNPLKVTYISSPMKVKASNASEFRAIVQELTGKNS 60

Query: 61 HSPTHRSNHKPPPHAAQTPSTSTLH 83
              H S+    PHA      S  H
Sbjct: 61 EVKDHNSDDAVFPHAEDAKVFSHNH 85

[Close]

BLAST of Cp4.1LG11g10000 vs. NCBI nr
Match: gi|566146535|ref|XP_006368281.1| (hypothetical protein POPTR_0001s01240g [Populus trichocarpa])

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 26/45 (57.78%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 10 KDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTG 55
          ++ ++ +NPTK +++P+K+ YISSPMM+KA+NA EFR IVQ+LTG
Sbjct: 12 QEPRRGKNPTKHRKEPVKITYISSPMMVKATNASEFRVIVQELTG 56

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g10000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g10000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIA7_CUCSA	3.6e-31	60.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010150 PE=4 SV=1	[more]
A0A061F1R9_THECC	2.7e-07	68.18	Uncharacterized protein OS=Theobroma cacao GN=TCM_026260 PE=4 SV=1	[more]
A0A067DJ56_CITSI	3.6e-07	45.88	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031928mg PE=4 SV=1	[more]
V4VSD1_9ROSI	1.0e-06	45.88	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022688mg PE=4 SV=1	[more]
B9MUD7_POPTR	1.8e-06	57.78	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01240g PE=4 SV=1	[more]

BLAST of Cp4.1LG11g10000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g10000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205660\|gb\|KGN60779.1\|	5.1e-31	60.43	hypothetical protein Csa_2G010150 [Cucumis sativus]	[more]
gi\|590642352\|ref\|XP_007030494.1\|	3.9e-07	68.18	Uncharacterized protein TCM_026260 [Theobroma cacao]	[more]
gi\|641823493\|gb\|KDO42898.1\|	5.2e-07	45.88	hypothetical protein CISIN_1g031928mg [Citrus sinensis]	[more]
gi\|567900532\|ref\|XP_006442754.1\|	1.5e-06	45.88	hypothetical protein CICLE_v10022688mg [Citrus clementina]	[more]
gi\|566146535\|ref\|XP_006368281.1\|	2.6e-06	57.78	hypothetical protein POPTR_0001s01240g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g10000.1	Cp4.1LG11g10000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 31..58 score: 9.6
None	No IPR available	PANTHER	PTHR33624	FAMILY NOT NAMED	coord: 10..54 score: 7.3
None	No IPR available	PANTHER	PTHR33624:SF3	SUBFAMILY NOT NAMED	coord: 10..54 score: 7.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g10000	Cucsa.133030	Cucumber (Gy14) v1	cgycpeB0351
Cp4.1LG11g10000	CmaCh05G012240	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g10000	CmoCh05G012520	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g10000	Cla013631	Watermelon (97103) v1	cpewmB113
Cp4.1LG11g10000	Csa2G010150	Cucumber (Chinese Long) v2	cpecuB103
Cp4.1LG11g10000	MELO3C004408	Melon (DHL92) v3.5.1	cpemeB099
Cp4.1LG11g10000	ClCG02G016910	Watermelon (Charleston Gray)	cpewcgB104
Cp4.1LG11g10000	CSPI02G02690	Wild cucumber (PI 183967)	cpecpiB100
Cp4.1LG11g10000	Lsi11G004170	Bottle gourd (USVL1VR-Ls)	cpelsiB074
Cp4.1LG11g10000	MELO3C004408.2	Melon (DHL92) v3.6.1	cpemedB123
Cp4.1LG11g10000	CsaV3_2G003860	Cucumber (Chinese Long) v3	cpecucB0114
Cp4.1LG11g10000	BhiUN66G24	Wax gourd	cpewgoB0154
Cp4.1LG11g10000	CsGy2G002790	Cucumber (Gy14) v2	cgybcpeB168

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g10000	Wax gourd	cpewgoB0114
Cp4.1LG11g10000	Cucurbita pepo (Zucchini)	cpecpeB139
Cp4.1LG11g10000	Cucurbita maxima (Rimu)	cmacpeB171
Cp4.1LG11g10000	Cucurbita moschata (Rifu)	cmocpeB147
Cp4.1LG11g10000	Silver-seed gourd	carcpeB0357
Cp4.1LG11g10000	Silver-seed gourd	carcpeB1494