Cp4.1LG07g09800 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g09800
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG07 : 8797116 .. 8797493 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATCTTAGAAGCCTTCCTAATCATCTTCGTCACGACAAACTCGAAGCTTCGAATTACCGAGCAACAATGGCGAACAAACCCATCAAAGTGAAGTACATTTCAAGTCCCATGATGGTGAAGGCCAACAACGAGTCTGAGTTTCGAGCCATAGTTCAGAAGCTCACCGGCCAGCACTCGGCCGATGATGCTTTTGATCGATCACCTCAAGAATTCAACCATGCTTTTTATCCCCCGTCGTCTACTGTGACTTCTTTTGACTCGAAGGATTGTTATGGTTTGGTTTTCAGTGATGCTTACGATCCGATCGGGGTCGGTGAAATGAAAGATTCTTTATATGGGTTTCAAGCTTCTTATGTTGATGTATGGAGATGA

mRNA sequence

ATGGAGAATCTTAGAAGCCTTCCTAATCATCTTCGTCACGACAAACTCGAAGCTTCGAATTACCGAGCAACAATGGCGAACAAACCCATCAAAGTGAAGTACATTTCAAGTCCCATGATGGTGAAGGCCAACAACGAGTCTGAGTTTCGAGCCATAGTTCAGAAGCTCACCGGCCAGCACTCGGCCGATGATGCTTTTGATCGATCACCTCAAGAATTCAACCATGCTTTTTATCCCCCGTCGTCTACTGTGACTTCTTTTGACTCGAAGGATTGTTATGGTTTGGTTTTCAGTGATGCTTACGATCCGATCGGGGTCGGTGAAATGAAAGATTCTTTATATGGGTTTCAAGCTTCTTATGTTGATGTATGGAGATGA

Coding sequence (CDS)

ATGGAGAATCTTAGAAGCCTTCCTAATCATCTTCGTCACGACAAACTCGAAGCTTCGAATTACCGAGCAACAATGGCGAACAAACCCATCAAAGTGAAGTACATTTCAAGTCCCATGATGGTGAAGGCCAACAACGAGTCTGAGTTTCGAGCCATAGTTCAGAAGCTCACCGGCCAGCACTCGGCCGATGATGCTTTTGATCGATCACCTCAAGAATTCAACCATGCTTTTTATCCCCCGTCGTCTACTGTGACTTCTTTTGACTCGAAGGATTGTTATGGTTTGGTTTTCAGTGATGCTTACGATCCGATCGGGGTCGGTGAAATGAAAGATTCTTTATATGGGTTTCAAGCTTCTTATGTTGATGTATGGAGATGA

Protein sequence

MENLRSLPNHLRHDKLEASNYRATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSADDAFDRSPQEFNHAFYPPSSTVTSFDSKDCYGLVFSDAYDPIGVGEMKDSLYGFQASYVDVWR

Homology

[Close]

BLAST of Cp4.1LG07g09800 vs. Swiss-Prot
Match: SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.2e-06
Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 1


Query: 22  RATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSADDAFD--RSPQEFNHAFYP 81
           + T  NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D   +   SP   +H   P
Sbjct: 32  KTTSTNKPIKVRYISNPMRVQ-TCASKFRELVQELTGQDAVDLQPEPIYSPSSDDHNLSP 91

Query: 82  PSSTVT-SFDSKDCYGLVFSDAYDPIGVGEM 110
           P+  +      ++ +G   SD Y+P+   +M
Sbjct: 92  PAENLAPRVLHQEPFGERDSDCYEPLNAEDM 121

[Close]

BLAST of Cp4.1LG07g09800 vs. TrEMBL
Match: A0A0A0LFF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010160 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.2e-25
Identity = 78/141 (55.32%), Postives = 92/141 (65.25%), Query Frame = 1


Query: 1   MENLRSLPNHLRHDKLEASNYRATM--ANKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MEN  +LP++  H K+   + +AT+   NKPIKVKYISSPMMVKANNESEFRAIVQKLTG
Sbjct: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60

Query: 61  QHSADDAFDRSPQEFNHAFYPP---SSTVTSFDSKDCYG------LVFSDAYD----PIG 120
           QHS D   D+S Q+FNH FYPP   SS   SFD KDCYG      ++F    D       
Sbjct: 61  QHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYW 120

Query: 121 VGEMK-DSLYGFQA-SYVDVW 125
            GEM+  S  GFQA S V++W
Sbjct: 121 RGEMELGSFSGFQASSCVNIW 140

[Close]

BLAST of Cp4.1LG07g09800 vs. TrEMBL
Match: W9RT96_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024544 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 1  MENLRSLPNHLRHDKLEASNYRATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQH 60
          ME L     +  +  L +    +    KPIK+KYISSPMMV+ANN SEFRAIVQ+LTG++
Sbjct: 3  MEKLLGNSQYQNNPHLRSQKQPSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRN 62

Query: 61 S 62
          S
Sbjct: 63 S 63

[Close]

BLAST of Cp4.1LG07g09800 vs. TrEMBL
Match: A0A0D2U3H7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G186400 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 29 PIKVKYISSPMMVKANNESEFRAIVQKLTGQHS 62
          P+KVKYISSPMMVKA+N  EFRAIVQ+LTGQHS
Sbjct: 19 PVKVKYISSPMMVKASNAEEFRAIVQELTGQHS 51

[Close]

BLAST of Cp4.1LG07g09800 vs. TrEMBL
Match: M5WL38_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017028mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.6e-06
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 1  MENLRSLPNHLRHDKLEASNYRATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQH 60
          ME LR+L +H  H      + + T A  P  +KYISSPMMV+A+N SEFRAIVQ+LTGQ 
Sbjct: 1  MEQLRNLHSH--HQPQSDQSKKPTKAKAPT-IKYISSPMMVQASNASEFRAIVQQLTGQD 60

Query: 61 SADDAFD 68
          S  +  D
Sbjct: 61 SNIEVLD 64

[Close]

BLAST of Cp4.1LG07g09800 vs. TAIR10
Match: AT3G56710.1 (AT3G56710.1 sigma factor binding protein 1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07
Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 1


Query: 22  RATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSADDAFD--RSPQEFNHAFYP 81
           + T  NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D   +   SP   +H   P
Sbjct: 32  KTTSTNKPIKVRYISNPMRVQ-TCASKFRELVQELTGQDAVDLQPEPIYSPSSDDHNLSP 91

Query: 82  PSSTVT-SFDSKDCYGLVFSDAYDPIGVGEM 110
           P+  +      ++ +G   SD Y+P+   +M
Sbjct: 92  PAENLAPRVLHQEPFGERDSDCYEPLNAEDM 121

[Close]

BLAST of Cp4.1LG07g09800 vs. TAIR10
Match: AT2G41180.1 (AT2G41180.1 VQ motif-containing protein)

HSP 1 Score: 47.4 bits (111), Expect = 7.7e-06
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 1


Query: 22  RATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSADDAFDRSPQEFNHA-FYPP 81
           ++T  +KPIKV+YIS+PM V+    S+FR +VQ+LTGQ +AD     SP  F     + P
Sbjct: 29  KSTTTHKPIKVRYISNPMRVE-TCPSKFRELVQELTGQDAAD--LPPSPTTFTAVDLHRP 88

Query: 82  SSTVTSFDSKDCYGLVFSDAYDPI-----GVGEMKDSLYGFQAS 120
             +  + +  D  G V  + Y P+        +M   L GF +S
Sbjct: 89  CESEMNLEPLD--GEVRGEYYSPLDEEVFNAPQMSAGLSGFFSS 127

[Close]

BLAST of Cp4.1LG07g09800 vs. NCBI nr
Match: gi|700205661|gb|KGN60780.1| (hypothetical protein Csa_2G010160 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-24
Identity = 78/141 (55.32%), Postives = 92/141 (65.25%), Query Frame = 1


Query: 1   MENLRSLPNHLRHDKLEASNYRATM--ANKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MEN  +LP++  H K+   + +AT+   NKPIKVKYISSPMMVKANNESEFRAIVQKLTG
Sbjct: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60

Query: 61  QHSADDAFDRSPQEFNHAFYPP---SSTVTSFDSKDCYG------LVFSDAYD----PIG 120
           QHS D   D+S Q+FNH FYPP   SS   SFD KDCYG      ++F    D       
Sbjct: 61  QHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYW 120

Query: 121 VGEMK-DSLYGFQA-SYVDVW 125
            GEM+  S  GFQA S V++W
Sbjct: 121 RGEMELGSFSGFQASSCVNIW 140

[Close]

BLAST of Cp4.1LG07g09800 vs. NCBI nr
Match: gi|764619575|ref|XP_011468362.1| (PREDICTED: uncharacterized protein LOC105352572 [Fragaria vesca subsp. vesca])

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-06
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1


Query: 1  MENLRSLPNHLRHDKLEASNYRATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQH 60
          ME LR+  N  R  + E    + + A  PI++KYISSPMMV+ANN SEFRAIVQ+LTGQ+
Sbjct: 1  MEQLRNHEN--RQQRTERR--KRSKAETPIRIKYISSPMMVQANNASEFRAIVQELTGQN 57

Query: 61 S 62
          S
Sbjct: 61 S 57

[Close]

BLAST of Cp4.1LG07g09800 vs. NCBI nr
Match: gi|703121161|ref|XP_010102262.1| (hypothetical protein L484_024544 [Morus notabilis])

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-06
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 1  MENLRSLPNHLRHDKLEASNYRATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQH 60
          ME L     +  +  L +    +    KPIK+KYISSPMMV+ANN SEFRAIVQ+LTG++
Sbjct: 3  MEKLLGNSQYQNNPHLRSQKQPSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRN 62

Query: 61 S 62
          S
Sbjct: 63 S 63

[Close]

BLAST of Cp4.1LG07g09800 vs. NCBI nr
Match: gi|823261712|ref|XP_012463594.1| (PREDICTED: uncharacterized protein LOC105782992 [Gossypium raimondii])

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 29 PIKVKYISSPMMVKANNESEFRAIVQKLTGQHS 62
          P+KVKYISSPMMVKA+N  EFRAIVQ+LTGQHS
Sbjct: 19 PVKVKYISSPMMVKASNAEEFRAIVQELTGQHS 51

[Close]

BLAST of Cp4.1LG07g09800 vs. NCBI nr
Match: gi|595831738|ref|XP_007206331.1| (hypothetical protein PRUPE_ppa017028mg [Prunus persica])

HSP 1 Score: 58.5 bits (140), Expect = 9.4e-06
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 1  MENLRSLPNHLRHDKLEASNYRATMANKPIKVKYISSPMMVKANNESEFRAIVQKLTGQH 60
          ME LR+L +H  H      + + T A  P  +KYISSPMMV+A+N SEFRAIVQ+LTGQ 
Sbjct: 1  MEQLRNLHSH--HQPQSDQSKKPTKAKAPT-IKYISSPMMVQASNASEFRAIVQQLTGQD 60

Query: 61 SADDAFD 68
          S  +  D
Sbjct: 61 SNIEVLD 64

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g09800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SIB1_ARATH	3.2e-06	37.36	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE...	[more]

BLAST of Cp4.1LG07g09800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFF9_CUCSA	8.2e-25	55.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010160 PE=4 SV=1	[more]
W9RT96_9ROSA	1.7e-06	52.46	Uncharacterized protein OS=Morus notabilis GN=L484_024544 PE=4 SV=1	[more]
A0A0D2U3H7_GOSRA	2.3e-06	84.85	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G186400 PE=4 SV=1	[more]
M5WL38_PRUPE	6.6e-06	52.24	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017028mg PE=4 SV=1	[more]

BLAST of Cp4.1LG07g09800 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56710.1	1.8e-07	37.36	sigma factor binding protein 1	[more]
AT2G41180.1	7.7e-06	35.58	VQ motif-containing protein	[more]

BLAST of Cp4.1LG07g09800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205661\|gb\|KGN60780.1\|	1.2e-24	55.32	hypothetical protein Csa_2G010160 [Cucumis sativus]	[more]
gi\|764619575\|ref\|XP_011468362.1\|	2.5e-06	57.38	PREDICTED: uncharacterized protein LOC105352572 [Fragaria vesca subsp. vesca]	[more]
gi\|703121161\|ref\|XP_010102262.1\|	2.5e-06	52.46	hypothetical protein L484_024544 [Morus notabilis]	[more]
gi\|823261712\|ref\|XP_012463594.1\|	3.2e-06	84.85	PREDICTED: uncharacterized protein LOC105782992 [Gossypium raimondii]	[more]
gi\|595831738\|ref\|XP_007206331.1\|	9.4e-06	52.24	hypothetical protein PRUPE_ppa017028mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g09800.1	Cp4.1LG07g09800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 35..63 score: 1.
None	No IPR available	PANTHER	PTHR33624	FAMILY NOT NAMED	coord: 27..61 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG07g09800	CmaCh12G011400	Cucurbita maxima (Rimu)	cmacpeB203
Cp4.1LG07g09800	CmoCh12G011610	Cucurbita moschata (Rifu)	cmocpeB175
Cp4.1LG07g09800	Cla013632	Watermelon (97103) v1	cpewmB806
Cp4.1LG07g09800	Csa2G010160	Cucumber (Chinese Long) v2	cpecuB820
Cp4.1LG07g09800	MELO3C004408	Melon (DHL92) v3.5.1	cpemeB771
Cp4.1LG07g09800	ClCG02G016900	Watermelon (Charleston Gray)	cpewcgB733
Cp4.1LG07g09800	CSPI02G02700	Wild cucumber (PI 183967)	cpecpiB821
Cp4.1LG07g09800	Lsi11G004180	Bottle gourd (USVL1VR-Ls)	cpelsiB659
Cp4.1LG07g09800	MELO3C004408.2	Melon (DHL92) v3.6.1	cpemedB907
Cp4.1LG07g09800	CsaV3_2G003860	Cucumber (Chinese Long) v3	cpecucB1014
Cp4.1LG07g09800	CsGy2G002800	Cucumber (Gy14) v2	cgybcpeB271

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG07g09800	Cucumber (Chinese Long) v3	cpecucB1015
Cp4.1LG07g09800	Wax gourd	cpewgoB1006
Cp4.1LG07g09800	Wax gourd	cpewgoB1023
Cp4.1LG07g09800	Wax gourd	cpewgoB1068
Cp4.1LG07g09800	Cucurbita pepo (Zucchini)	cpecpeB139
Cp4.1LG07g09800	Cucurbita pepo (Zucchini)	cpecpeB140
Cp4.1LG07g09800	Cucurbita pepo (Zucchini)	cpecpeB373
Cp4.1LG07g09800	Cucurbita pepo (Zucchini)	cpecpeB504
Cp4.1LG07g09800	Cucumber (Gy14) v1	cgycpeB0356
Cp4.1LG07g09800	Cucurbita maxima (Rimu)	cmacpeB164
Cp4.1LG07g09800	Cucurbita maxima (Rimu)	cmacpeB789
Cp4.1LG07g09800	Cucurbita moschata (Rifu)	cmocpeB742
Cp4.1LG07g09800	Cucurbita moschata (Rifu)	cmocpeB745
Cp4.1LG07g09800	Wild cucumber (PI 183967)	cpecpiB822
Cp4.1LG07g09800	Bottle gourd (USVL1VR-Ls)	cpelsiB660
Cp4.1LG07g09800	Watermelon (Charleston Gray)	cpewcgB724
Cp4.1LG07g09800	Melon (DHL92) v3.5.1	cpemeB772
Cp4.1LG07g09800	Melon (DHL92) v3.6.1	cpemedB908
Cp4.1LG07g09800	Silver-seed gourd	carcpeB0055
Cp4.1LG07g09800	Silver-seed gourd	carcpeB0190
Cp4.1LG07g09800	Silver-seed gourd	carcpeB0361
Cp4.1LG07g09800	Silver-seed gourd	carcpeB0817
Cp4.1LG07g09800	Silver-seed gourd	carcpeB1496