Cla97C02G042630 (gene) Watermelon (97103) v2
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAATCTTACAAGCCTTCCTAGTAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGTGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAATCACTTCAAGAGTTTAACCAAGTTTTTTATCCCCCGACGTCGTCCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTGCTATGCTTTTTCGTCCACCGGTCATGTCTTTGATCCAACCGGAGTCGCCGAAGGCCATTATTGGCGGGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA ATGGAGAATCTTACAAGCCTTCCTAGTAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGTGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAATCACTTCAAGAGTTTAACCAAGTTTTTTATCCCCCGACGTCGTCCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTGCTATGCTTTTTCGTCCACCGGTCATGTCTTTGATCCAACCGGAGTCGCCGAAGGCCATTATTGGCGGGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA ATGGAGAATCTTACAAGCCTTCCTAGTAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGTGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAATCACTTCAAGAGTTTAACCAAGTTTTTTATCCCCCGACGTCGTCCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTGCTATGCTTTTTCGTCCACCGGTCATGTCTTTGATCCAACCGGAGTCGCCGAAGGCCATTATTGGCGGGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA MENLTSLPSNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDCYAFSSTGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW
BLAST of Cla97C02G042630 vs. NCBI nr
Match: KGN60780.1 (hypothetical protein Csa_2G010160 [Cucumis sativus]) HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41 Identity = 102/142 (71.83%), Postives = 111/142 (78.17%), Query Frame = 0
BLAST of Cla97C02G042630 vs. NCBI nr
Match: XP_022938305.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 131.0 bits (328), Expect = 3.2e-27 Identity = 81/137 (59.12%), Postives = 96/137 (70.07%), Query Frame = 0
BLAST of Cla97C02G042630 vs. NCBI nr
Match: XP_022142960.1 (sigma factor binding protein 1, chloroplastic-like [Momordica charantia]) HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17 Identity = 66/113 (58.41%), Postives = 77/113 (68.14%), Query Frame = 0
BLAST of Cla97C02G042630 vs. NCBI nr
Match: XP_010102262.1 (sigma factor binding protein 1, chloroplastic [Morus notabilis] >EXB93205.1 hypothetical protein L484_024544 [Morus notabilis]) HSP 1 Score: 71.2 bits (173), Expect = 3.0e-09 Identity = 56/141 (39.72%), Postives = 73/141 (51.77%), Query Frame = 0
BLAST of Cla97C02G042630 vs. NCBI nr
Match: GAV66768.1 (VQ domain-containing protein [Cephalotus follicularis]) HSP 1 Score: 68.2 bits (165), Expect = 2.5e-08 Identity = 54/130 (41.54%), Postives = 74/130 (56.92%), Query Frame = 0
BLAST of Cla97C02G042630 vs. TrEMBL
Match: tr|A0A0A0LFF9|A0A0A0LFF9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 8.8e-42 Identity = 102/142 (71.83%), Postives = 111/142 (78.17%), Query Frame = 0
BLAST of Cla97C02G042630 vs. TrEMBL
Match: tr|W9RT96|W9RT96_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024544 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09 Identity = 56/141 (39.72%), Postives = 73/141 (51.77%), Query Frame = 0
BLAST of Cla97C02G042630 vs. TrEMBL
Match: tr|A0A1Q3BFQ5|A0A1Q3BFQ5_CEPFO (VQ domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10278 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08 Identity = 54/130 (41.54%), Postives = 74/130 (56.92%), Query Frame = 0
BLAST of Cla97C02G042630 vs. TrEMBL
Match: tr|A0A2P4H9C4|A0A2P4H9C4_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_61415 PE=4 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 5.4e-07 Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0
BLAST of Cla97C02G042630 vs. TrEMBL
Match: tr|A0A0D2U3H7|A0A0D2U3H7_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G186400 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06 Identity = 46/107 (42.99%), Postives = 57/107 (53.27%), Query Frame = 0
BLAST of Cla97C02G042630 vs. Swiss-Prot
Match: sp|Q9LDH1|SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 3.0e-05 Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 0
BLAST of Cla97C02G042630 vs. TAIR10
Match: AT3G56710.1 (sigma factor binding protein 1) HSP 1 Score: 49.7 bits (117), Expect = 1.7e-06 Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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