Cla97C02G042630 (gene) Watermelon (97103) v2

NameCla97C02G042630
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionSigma factor binding protein 1, chloroplastic
LocationCla97Chr02 : 30836349 .. 30836762 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATCTTACAAGCCTTCCTAGTAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGTGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAATCACTTCAAGAGTTTAACCAAGTTTTTTATCCCCCGACGTCGTCCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTGCTATGCTTTTTCGTCCACCGGTCATGTCTTTGATCCAACCGGAGTCGCCGAAGGCCATTATTGGCGGGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA

mRNA sequence

ATGGAGAATCTTACAAGCCTTCCTAGTAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGTGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAATCACTTCAAGAGTTTAACCAAGTTTTTTATCCCCCGACGTCGTCCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTGCTATGCTTTTTCGTCCACCGGTCATGTCTTTGATCCAACCGGAGTCGCCGAAGGCCATTATTGGCGGGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA

Coding sequence (CDS)

ATGGAGAATCTTACAAGCCTTCCTAGTAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGTGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAATCACTTCAAGAGTTTAACCAAGTTTTTTATCCCCCGACGTCGTCCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTGCTATGCTTTTTCGTCCACCGGTCATGTCTTTGATCCAACCGGAGTCGCCGAAGGCCATTATTGGCGGGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA

Protein sequence

MENLTSLPSNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDCYAFSSTGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW
BLAST of Cla97C02G042630 vs. NCBI nr
Match: KGN60780.1 (hypothetical protein Csa_2G010160 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 102/142 (71.83%), Postives = 111/142 (78.17%), Query Frame = 0

Query: 1   MENLTSLPSNPDHQKITQIPNKPTID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MEN T+LPSN  H+K++Q+ NK TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTG
Sbjct: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60

Query: 61  QHSSPDDAFHQSLQEFNQVFY-PPTSSLAVASFDPKDCYAFSSTGHV-FDPTGVA-EGHY 120
           QHS   D   QS+Q+FN VFY PP SS    SFDPKDCY  S++G V FD      EG Y
Sbjct: 61  QHSPDHD--DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRY 120

Query: 121 WRGEME-GSFSGFQASSCVNIW 138
           WRGEME GSFSGFQASSCVNIW
Sbjct: 121 WRGEMELGSFSGFQASSCVNIW 140

BLAST of Cla97C02G042630 vs. NCBI nr
Match: XP_022938305.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 3.2e-27
Identity = 81/137 (59.12%), Postives = 96/137 (70.07%), Query Frame = 0

Query: 1   MENLTSLPSNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQ 60
           MENL SLP++  H+K+     + T+  NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQ
Sbjct: 1   MENLKSLPNHLRHEKLEASNYRATM-ANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQ 60

Query: 61  HSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDCYAFSSTGHVFDPTGVAEGHYWRGE 120
           HS+ DDAF +S QEFN  F PP+S+  V SFD KDCY   S+   +DP GV       GE
Sbjct: 61  HSA-DDAFDRSPQEFNHAFCPPSST--VTSFDSKDCYDLVSS-DAYDPIGV-------GE 120

Query: 121 MEGSFSGFQASSCVNIW 138
           M+ S  GFQA S V++W
Sbjct: 121 MKDSLYGFQA-SYVDVW 124

BLAST of Cla97C02G042630 vs. NCBI nr
Match: XP_022142960.1 (sigma factor binding protein 1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 66/113 (58.41%), Postives = 77/113 (68.14%), Query Frame = 0

Query: 29  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSL----QEFNQVFYPPTS 88
           KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ +SPDDAF        +E N  FYPP  
Sbjct: 3   KPIKVKYISNPMMVKANSESEFREIVQRLTGQ-NSPDDAFESPAFGGEEELNHAFYPPPP 62

Query: 89  SLAVASFDPKDCYAFSSTGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW 138
           S AV S DPK  Y   S G V +   + EG + + EM+G FSGFQA SCVN +
Sbjct: 63  STAV-STDPKGYYGLVS-GKVGE---LGEGCFRQDEMQG-FSGFQA-SCVNTY 107

BLAST of Cla97C02G042630 vs. NCBI nr
Match: XP_010102262.1 (sigma factor binding protein 1, chloroplastic [Morus notabilis] >EXB93205.1 hypothetical protein L484_024544 [Morus notabilis])

HSP 1 Score: 71.2 bits (173), Expect = 3.0e-09
Identity = 56/141 (39.72%), Postives = 73/141 (51.77%), Query Frame = 0

Query: 22  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSS----PDDAFH-QSLQEFN 81
           +P+  + KPIK+KYISSPMMV+ANN SEFRAIVQ+LTG++S+     DD  H +SL    
Sbjct: 23  QPSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSNYTDLYDDVHHDESLNRTT 82

Query: 82  QVF----------------YPPTSSLAVASFDPKDCYAFSSTGHVFDPTGVA-------E 135
            +F                Y P  S   A  D +D       G  F    V+        
Sbjct: 83  TIFSESDHDQPGWSQFSADYHPQGSDDHALVDDRD--HDHHVGGKFSNPNVSLLGQIDEL 142

BLAST of Cla97C02G042630 vs. NCBI nr
Match: GAV66768.1 (VQ domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-08
Identity = 54/130 (41.54%), Postives = 74/130 (56.92%), Query Frame = 0

Query: 12  DH--QKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDD--- 71
           DH  QK+T+      + +N PIKV +ISSPM+VKA+N SEFRAIVQ+LTGQ+S+ +D   
Sbjct: 12  DHKSQKLTK------VKKNDPIKVTHISSPMLVKASNPSEFRAIVQELTGQYSNINDFGD 71

Query: 72  --AFHQSLQEFNQVFY---PPTSSLAVASFDPKDCYAFSSTGHVFDPTGVAEGHYWRGEM 131
             A   + +E NQV Y   PP      A+ D ++    SS+     P    +G  W G+ 
Sbjct: 72  LYATSNTYEEANQVSYHKAPPQ-----ANIDTENSDTISSS---ISPLEFNQGFVW-GDD 126

BLAST of Cla97C02G042630 vs. TrEMBL
Match: tr|A0A0A0LFF9|A0A0A0LFF9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 8.8e-42
Identity = 102/142 (71.83%), Postives = 111/142 (78.17%), Query Frame = 0

Query: 1   MENLTSLPSNPDHQKITQIPNKPTID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MEN T+LPSN  H+K++Q+ NK TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTG
Sbjct: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60

Query: 61  QHSSPDDAFHQSLQEFNQVFY-PPTSSLAVASFDPKDCYAFSSTGHV-FDPTGVA-EGHY 120
           QHS   D   QS+Q+FN VFY PP SS    SFDPKDCY  S++G V FD      EG Y
Sbjct: 61  QHSPDHD--DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRY 120

Query: 121 WRGEME-GSFSGFQASSCVNIW 138
           WRGEME GSFSGFQASSCVNIW
Sbjct: 121 WRGEMELGSFSGFQASSCVNIW 140

BLAST of Cla97C02G042630 vs. TrEMBL
Match: tr|W9RT96|W9RT96_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024544 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09
Identity = 56/141 (39.72%), Postives = 73/141 (51.77%), Query Frame = 0

Query: 22  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSS----PDDAFH-QSLQEFN 81
           +P+  + KPIK+KYISSPMMV+ANN SEFRAIVQ+LTG++S+     DD  H +SL    
Sbjct: 23  QPSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSNYTDLYDDVHHDESLNRTT 82

Query: 82  QVF----------------YPPTSSLAVASFDPKDCYAFSSTGHVFDPTGVA-------E 135
            +F                Y P  S   A  D +D       G  F    V+        
Sbjct: 83  TIFSESDHDQPGWSQFSADYHPQGSDDHALVDDRD--HDHHVGGKFSNPNVSLLGQIDEL 142

BLAST of Cla97C02G042630 vs. TrEMBL
Match: tr|A0A1Q3BFQ5|A0A1Q3BFQ5_CEPFO (VQ domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10278 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 54/130 (41.54%), Postives = 74/130 (56.92%), Query Frame = 0

Query: 12  DH--QKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDD--- 71
           DH  QK+T+      + +N PIKV +ISSPM+VKA+N SEFRAIVQ+LTGQ+S+ +D   
Sbjct: 12  DHKSQKLTK------VKKNDPIKVTHISSPMLVKASNPSEFRAIVQELTGQYSNINDFGD 71

Query: 72  --AFHQSLQEFNQVFY---PPTSSLAVASFDPKDCYAFSSTGHVFDPTGVAEGHYWRGEM 131
             A   + +E NQV Y   PP      A+ D ++    SS+     P    +G  W G+ 
Sbjct: 72  LYATSNTYEEANQVSYHKAPPQ-----ANIDTENSDTISSS---ISPLEFNQGFVW-GDD 126

BLAST of Cla97C02G042630 vs. TrEMBL
Match: tr|A0A2P4H9C4|A0A2P4H9C4_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_61415 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.4e-07
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 18 QIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQS 72
          Q P+  T  + +P+K+KYISSPM+VKA N SEFRAIVQ+LTGQHS      HQS
Sbjct: 19 QNPSPTTKVKREPMKIKYISSPMLVKARNASEFRAIVQELTGQHSEDRSDPHQS 72

BLAST of Cla97C02G042630 vs. TrEMBL
Match: tr|A0A0D2U3H7|A0A0D2U3H7_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G186400 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 46/107 (42.99%), Postives = 57/107 (53.27%), Query Frame = 0

Query: 30  PIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVA 89
           P+KVKYISSPMMVKA+N  EFRAIVQ+LTGQHS   +  +              ++   A
Sbjct: 19  PVKVKYISSPMMVKASNAEEFRAIVQELTGQHSDMGEPVN------------VVTTNTKA 78

Query: 90  SFDPK---DCYAFS-STGHVFDPTGVAEGHYWRGEMEGSFSGFQASS 133
             D +   D Y    S+  +FD     EG  WRG  E  F GFQ+ S
Sbjct: 79  KLDDRNWLDAYPDDMSSMELFD-----EGFVWRGVAENLF-GFQSPS 107

BLAST of Cla97C02G042630 vs. Swiss-Prot
Match: sp|Q9LDH1|SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.0e-05
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 0

Query: 28  NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS---SPDDAFHQSLQEFNQVFYPPTS 87
           NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ +    P+  +  S  + N    PP  
Sbjct: 37  NKPIKVRYISNPMRVQ-TCASKFRELVQELTGQDAVDLQPEPIYSPSSDDHN--LSPPAE 96

Query: 88  SLA--VASFDP-----KDCYAFSSTGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNI 137
           +LA  V   +P      DCY         +P   AE  +   +M   FSGF ++   N+
Sbjct: 97  NLAPRVLHQEPFGERDSDCY---------EPLN-AEDMFLPDQMSAGFSGFFSNGFYNV 142

BLAST of Cla97C02G042630 vs. TAIR10
Match: AT3G56710.1 (sigma factor binding protein 1)

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-06
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 0

Query: 28  NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS---SPDDAFHQSLQEFNQVFYPPTS 87
           NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ +    P+  +  S  + N    PP  
Sbjct: 37  NKPIKVRYISNPMRVQ-TCASKFRELVQELTGQDAVDLQPEPIYSPSSDDHN--LSPPAE 96

Query: 88  SLA--VASFDP-----KDCYAFSSTGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNI 137
           +LA  V   +P      DCY         +P   AE  +   +M   FSGF ++   N+
Sbjct: 97  NLAPRVLHQEPFGERDSDCY---------EPLN-AEDMFLPDQMSAGFSGFFSNGFYNV 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN60780.11.3e-4171.83hypothetical protein Csa_2G010160 [Cucumis sativus][more]
XP_022938305.13.2e-2759.12sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata][more]
XP_022142960.11.0e-1758.41sigma factor binding protein 1, chloroplastic-like [Momordica charantia][more]
XP_010102262.13.0e-0939.72sigma factor binding protein 1, chloroplastic [Morus notabilis] >EXB93205.1 hypo... [more]
GAV66768.12.5e-0841.54VQ domain-containing protein [Cephalotus follicularis][more]
Match NameE-valueIdentityDescription
tr|A0A0A0LFF9|A0A0A0LFF9_CUCSA8.8e-4271.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=1[more]
tr|W9RT96|W9RT96_9ROSA2.0e-0939.72Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024544 PE=4 SV=1[more]
tr|A0A1Q3BFQ5|A0A1Q3BFQ5_CEPFO1.7e-0841.54VQ domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10278... [more]
tr|A0A2P4H9C4|A0A2P4H9C4_QUESU5.4e-0761.11Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_61415 PE=4 SV=1[more]
tr|A0A0D2U3H7|A0A0D2U3H7_GOSRA1.2e-0642.99Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G186400 PE=4 ... [more]
Match NameE-valueIdentityDescription
sp|Q9LDH1|SIB1_ARATH3.0e-0535.29Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
AT3G56710.11.7e-0635.29sigma factor binding protein 1[more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0051091positive regulation of sequence-specific DNA binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR039335SIB1/2
IPR008889VQ
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0071482 cellular response to light stimulus
biological_process GO:0006952 defense response
biological_process GO:0009816 defense response to bacterium, incompatible interaction
biological_process GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
cellular_component GO:0009536 plastid
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G042630.1Cla97C02G042630.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 36..64
e-value: 6.2E-9
score: 35.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR33624:SF2SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC-RELATEDcoord: 14..134
IPR039335Sigma factor binding protein 1/2PANTHERPTHR33624FAMILY NOT NAMEDcoord: 14..134

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G042630Silver-seed gourdcarwmbB1129
Cla97C02G042630Cucumber (Gy14) v2cgybwmbB122
Cla97C02G042630Cucumber (Gy14) v1cgywmbB213
Cla97C02G042630Cucurbita maxima (Rimu)cmawmbB810
Cla97C02G042630Cucurbita moschata (Rifu)cmowmbB785
Cla97C02G042630Wild cucumber (PI 183967)cpiwmbB131
Cla97C02G042630Cucumber (Chinese Long) v3cucwmbB132
Cla97C02G042630Cucumber (Chinese Long) v2cuwmbB129
Cla97C02G042630Bottle gourd (USVL1VR-Ls)lsiwmbB327
Cla97C02G042630Watermelon (97103) v1wmwmbB203
Cla97C02G042630Watermelon (97103) v1wmwmbB395
Cla97C02G042630Wax gourdwgowmbB128
Cla97C02G042630Watermelon (97103) v2wmbwmbB103
Cla97C02G042630Silver-seed gourdcarwmbB0259