Cla011332 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011332
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Susceptibility homeodomain transcription factor (Fragment) (AHRD V1 ***- Q8SAA7_ORYSA); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538
Location	Chr1 : 1377475 .. 1377939 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTGTGATTCCTCGACAAGACGAGCGAGCTGGAGCAGAAATCGTATACGGACACGAAGAATGCTACCGACAATCGGTGGAGCTTCTAAAAGAACTCGGTTTCCCGAGTGGCGTATTGCCATTGCAAGAGTTGGAGGAGTGTGGGATGGTGAGGGAGACTGGGTTCATTTGGATGAAGCAAAAGAAACCCTACGAGCACTTTTTCGAGACTACGAAATCCCGCGTCGCGTATGCGACCGAAGTGACGGCGTATGTGGAGAAGTTCAAGATGAAAAAGATGACGGGCGTGAAGAGCAAGCAGCTTCTTTTGTGGGTTCCTATTGGGGAGATGAGTATTGAAGATCCCAATAGGAAGAAGATTTGTTTTAGAACTCCTGTGGGAATTGGGAAATCGTTTCCTGTAACTGCGTTTATGGTGGATGAAGAGAAGAAAAAGTATTTGGAGAAGGTTGAGGAATGA

mRNA sequence

ATGGCGACTGTGATTCCTCGACAAGACGAGCGAGCTGGAGCAGAAATCGTATACGGACACGAAGAATGCTACCGACAATCGGTGGAGCTTCTAAAAGAACTCGGTTTCCCGAGTGGCGTATTGCCATTGCAAGAGTTGGAGGAGTGTGGGATGGTGAGGGAGACTGGGTTCATTTGGATGAAGCAAAAGAAACCCTACGAGCACTTTTTCGAGACTACGAAATCCCGCGTCGCGTATGCGACCGAAGTGACGGCGTATGTGGAGAAGTTCAAGATGAAAAAGATGACGGGCGTGAAGAGCAAGCAGCTTCTTTTGTGGGTTCCTATTGGGGAGATGAGTATTGAAGATCCCAATAGGAAGAAGATTTGTTTTAGAACTCCTGTGGGAATTGGGAAATCGTTTCCTGTAACTGCGTTTATGGTGGATGAAGAGAAGAAAAAGTATTTGGAGAAGGTTGAGGAATGA

Coding sequence (CDS)

ATGGCGACTGTGATTCCTCGACAAGACGAGCGAGCTGGAGCAGAAATCGTATACGGACACGAAGAATGCTACCGACAATCGGTGGAGCTTCTAAAAGAACTCGGTTTCCCGAGTGGCGTATTGCCATTGCAAGAGTTGGAGGAGTGTGGGATGGTGAGGGAGACTGGGTTCATTTGGATGAAGCAAAAGAAACCCTACGAGCACTTTTTCGAGACTACGAAATCCCGCGTCGCGTATGCGACCGAAGTGACGGCGTATGTGGAGAAGTTCAAGATGAAAAAGATGACGGGCGTGAAGAGCAAGCAGCTTCTTTTGTGGGTTCCTATTGGGGAGATGAGTATTGAAGATCCCAATAGGAAGAAGATTTGTTTTAGAACTCCTGTGGGAATTGGGAAATCGTTTCCTGTAACTGCGTTTATGGTGGATGAAGAGAAGAAAAAGTATTTGGAGAAGGTTGAGGAATGA

Protein sequence

MATVIPRQDERAGAEIVYGHEECYRQSVELLKELGFPSGVLPLQELEECGMVRETGFIWMKQKKPYEHFFETTKSRVAYATEVTAYVEKFKMKKMTGVKSKQLLLWVPIGEMSIEDPNRKKICFRTPVGIGKSFPVTAFMVDEEKKKYLEKVEE

Homology

[Close]

BLAST of Cla011332 vs. TrEMBL
Match: A0A0A0KK90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G148540 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.7e-75
Identity = 138/154 (89.61%), Postives = 148/154 (96.10%), Query Frame = 1


Query: 1   MATVIPRQDERAGAEIVYGHEECYRQSVELLKELGFPSGVLPLQELEECGMVRETGFIWM 60
           MATVIPRQDERAGAEI YGHEECYR+SVELLK+LGFPSGVLPLQELEECG+VRETGFIWM
Sbjct: 1   MATVIPRQDERAGAEIAYGHEECYRRSVELLKDLGFPSGVLPLQELEECGIVRETGFIWM 60

Query: 61  KQKKPYEHFFETTKSRVAYATEVTAYVEKFKMKKMTGVKSKQLLLWVPIGEMSIEDPNRK 120
           KQKKPYEHFFE T SRVAYATEVTAYVEK KMKKMTGVKS+QLLLWVPIGEMSIEDP++K
Sbjct: 61  KQKKPYEHFFEKTNSRVAYATEVTAYVEKLKMKKMTGVKSRQLLLWVPIGEMSIEDPSKK 120

Query: 121 KICFRTPVGIGKSFPVTAFMVDEEKKKYLEKVEE 155
           KICF+T +GIGKSFP+TAFMVDEEKK YLEK+EE
Sbjct: 121 KICFKTNMGIGKSFPITAFMVDEEKKMYLEKLEE 154

[Close]

BLAST of Cla011332 vs. TrEMBL
Match: V4SX21_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022654mg PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.7e-62
Identity = 115/150 (76.67%), Postives = 132/150 (88.00%), Query Frame = 1


Query: 1   MATVIPRQDERAGAEIVYGHEECYRQSVELLKELGFPSGVLPLQELEECGMVRETGFIWM 60
           M+++  R+DERAGAEIVYG EECYR S+ELL+ELGFP GVLPLQ+LEECG VRETGF+WM
Sbjct: 1   MSSIKAREDERAGAEIVYGAEECYRHSIELLEELGFPKGVLPLQDLEECGRVRETGFVWM 60

Query: 61  KQKKPYEHFFETTKSRVAYATEVTAYVEKFKMKKMTGVKSKQLLLWVPIGEMSIEDPNRK 120
           KQ+ PYEHFFE T +RV+YA EVTAYVEKFKMKKMTGVKSKQ+ LWVPI EMSIED +  
Sbjct: 61  KQRAPYEHFFEGTNTRVSYAAEVTAYVEKFKMKKMTGVKSKQMFLWVPISEMSIEDASSN 120

Query: 121 KICFRTPVGIGKSFPVTAFMVDEEKKKYLE 151
           KI F+TP+GIGKSFP+TAFM DEEK KYL+
Sbjct: 121 KIHFKTPMGIGKSFPITAFMTDEEKHKYLD 150

[Close]

BLAST of Cla011332 vs. TrEMBL
Match: A9PAE0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14640g PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 8.0e-62
Identity = 111/148 (75.00%), Postives = 135/148 (91.22%), Query Frame = 1


Query: 7   RQDERAGAEIVYGHEECYRQSVELLKELGFPSGVLPLQELEECGMVRETGFIWMKQKKPY 66
           ++DERAGAEIVYGHEEC+R S+ELL+ELGFP GVLPL++LEECG V+ETGF+WMKQK PY
Sbjct: 8   KEDERAGAEIVYGHEECHRHSIELLEELGFPKGVLPLKDLEECGRVKETGFVWMKQKAPY 67

Query: 67  EHFFETTKSRVAYATEVTAYVEKFKMKKMTGVKSKQLLLWVPIGEMSIEDPNRKKICFRT 126
           EHFF  + ++V+YATEVTAYVEKFKMKKMTG+KSKQ+ LWVP+ EMSIE+P+RKKI F+T
Sbjct: 68  EHFFVGSNTKVSYATEVTAYVEKFKMKKMTGIKSKQMFLWVPLSEMSIENPSRKKILFKT 127

Query: 127 PVGIGKSFPVTAFMVDEEKKKYLEKVEE 155
           P+GIGKSFPV+AFM DEEK++  EK+EE
Sbjct: 128 PMGIGKSFPVSAFMTDEEKQEQQEKLEE 155

[Close]

BLAST of Cla011332 vs. TrEMBL
Match: A0A061G3B3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015652 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.8e-61
Identity = 115/143 (80.42%), Postives = 127/143 (88.81%), Query Frame = 1


Query: 9   DERAGAEIVYGHEECYRQSVELLKELGFPSGVLPLQELEECGMVRETGFIWMKQKKPYEH 68
           DERAGAEIVYG EECYR S+ELL+ELGFP GVLPLQ+LEECG VRETGF+WMKQK PYEH
Sbjct: 10  DERAGAEIVYGAEECYRHSIELLEELGFPKGVLPLQDLEECGRVRETGFVWMKQKAPYEH 69

Query: 69  FFETTKSRVAYATEVTAYVEKFKMKKMTGVKSKQLLLWVPIGEMSIEDPNRKKICFRTPV 128
           FF  T +RV+YATEVT+YVEKFKMKKMTGVKSKQ+ LWVPI EMSIEDP   KI F+TP+
Sbjct: 70  FFAGTNTRVSYATEVTSYVEKFKMKKMTGVKSKQVFLWVPITEMSIEDPASNKIYFKTPM 129

Query: 129 GIGKSFPVTAFMVDEEKKKYLEK 152
           GIGKSFP+TAFM DEEK KYLE+
Sbjct: 130 GIGKSFPITAFMTDEEKHKYLEE 152

[Close]

BLAST of Cla011332 vs. TrEMBL
Match: A0A0V0HRN2_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.3e-60
Identity = 115/147 (78.23%), Postives = 128/147 (87.07%), Query Frame = 1


Query: 8   QDERAGAEIVYGHEECYRQSVELLKELGFPSGVLPLQELEECGMVRETGFIWMKQKKPYE 67
           QDERAGAEIVYG E+CY  S+ELLKELGFP GVL L++LEECG VRETGF+WMKQK PYE
Sbjct: 9   QDERAGAEIVYGVEDCYSHSLELLKELGFPMGVLALKDLEECGCVRETGFVWMKQKAPYE 68

Query: 68  HFFETTKSRVAYATEVTAYVEKFKMKKMTGVKSKQLLLWVPIGEMSIEDPNRKKICFRTP 127
           H+F  TK+ V+YATEVTAYVEK +MKKMTGVKSKQL LWVPI EMSIEDP + KI F+TP
Sbjct: 69  HYFVATKTLVSYATEVTAYVEKGRMKKMTGVKSKQLFLWVPIVEMSIEDPAQNKIHFKTP 128

Query: 128 VGIGKSFPVTAFMVDEEKKKYLEKVEE 155
           +GIGKSFP+TAFM DEEKKKYLEK  E
Sbjct: 129 IGIGKSFPLTAFMTDEEKKKYLEKANE 155

[Close]

BLAST of Cla011332 vs. NCBI nr
Match: gi|659074141|ref|XP_008437444.1| (PREDICTED: uncharacterized protein LOC103482858 [Cucumis melo])

HSP 1 Score: 293.9 bits (751), Expect = 1.6e-76
Identity = 140/154 (90.91%), Postives = 151/154 (98.05%), Query Frame = 1


Query: 1   MATVIPRQDERAGAEIVYGHEECYRQSVELLKELGFPSGVLPLQELEECGMVRETGFIWM 60
           MATVIPRQDERAGAEIVYGHEECYR+SVELLK+LGFPSGVLPLQELEECGMVRETGFIWM
Sbjct: 1   MATVIPRQDERAGAEIVYGHEECYRKSVELLKDLGFPSGVLPLQELEECGMVRETGFIWM 60

Query: 61  KQKKPYEHFFETTKSRVAYATEVTAYVEKFKMKKMTGVKSKQLLLWVPIGEMSIEDPNRK 120
           KQKKPYEHFFE T SRVAYATEVTAYVEKFKMKKMTGVKS+QLLLWVPIGEMSIEDP++K
Sbjct: 61  KQKKPYEHFFEKTNSRVAYATEVTAYVEKFKMKKMTGVKSRQLLLWVPIGEMSIEDPSKK 120

Query: 121 KICFRTPVGIGKSFPVTAFMVDEEKKKYLEKVEE 155
           KICF+T +GIGKSFP+TAF+VDEEKK+YLEK+EE
Sbjct: 121 KICFKTNMGIGKSFPITAFIVDEEKKRYLEKLEE 154

[Close]

BLAST of Cla011332 vs. NCBI nr
Match: gi|778699230|ref|XP_004143841.2| (PREDICTED: uncharacterized protein LOC101223048 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 5.3e-75
Identity = 138/154 (89.61%), Postives = 148/154 (96.10%), Query Frame = 1


Query: 1   MATVIPRQDERAGAEIVYGHEECYRQSVELLKELGFPSGVLPLQELEECGMVRETGFIWM 60
           MATVIPRQDERAGAEI YGHEECYR+SVELLK+LGFPSGVLPLQELEECG+VRETGFIWM
Sbjct: 1   MATVIPRQDERAGAEIAYGHEECYRRSVELLKDLGFPSGVLPLQELEECGIVRETGFIWM 60

Query: 61  KQKKPYEHFFETTKSRVAYATEVTAYVEKFKMKKMTGVKSKQLLLWVPIGEMSIEDPNRK 120
           KQKKPYEHFFE T SRVAYATEVTAYVEK KMKKMTGVKS+QLLLWVPIGEMSIEDP++K
Sbjct: 61  KQKKPYEHFFEKTNSRVAYATEVTAYVEKLKMKKMTGVKSRQLLLWVPIGEMSIEDPSKK 120

Query: 121 KICFRTPVGIGKSFPVTAFMVDEEKKKYLEKVEE 155
           KICF+T +GIGKSFP+TAFMVDEEKK YLEK+EE
Sbjct: 121 KICFKTNMGIGKSFPITAFMVDEEKKMYLEKLEE 154

[Close]

BLAST of Cla011332 vs. NCBI nr
Match: gi|567893480|ref|XP_006439228.1| (hypothetical protein CICLE_v10022654mg [Citrus clementina])

HSP 1 Score: 246.1 bits (627), Expect = 3.9e-62
Identity = 115/150 (76.67%), Postives = 132/150 (88.00%), Query Frame = 1


Query: 1   MATVIPRQDERAGAEIVYGHEECYRQSVELLKELGFPSGVLPLQELEECGMVRETGFIWM 60
           M+++  R+DERAGAEIVYG EECYR S+ELL+ELGFP GVLPLQ+LEECG VRETGF+WM
Sbjct: 1   MSSIKAREDERAGAEIVYGAEECYRHSIELLEELGFPKGVLPLQDLEECGRVRETGFVWM 60

Query: 61  KQKKPYEHFFETTKSRVAYATEVTAYVEKFKMKKMTGVKSKQLLLWVPIGEMSIEDPNRK 120
           KQ+ PYEHFFE T +RV+YA EVTAYVEKFKMKKMTGVKSKQ+ LWVPI EMSIED +  
Sbjct: 61  KQRAPYEHFFEGTNTRVSYAAEVTAYVEKFKMKKMTGVKSKQMFLWVPISEMSIEDASSN 120

Query: 121 KICFRTPVGIGKSFPVTAFMVDEEKKKYLE 151
           KI F+TP+GIGKSFP+TAFM DEEK KYL+
Sbjct: 121 KIHFKTPMGIGKSFPITAFMTDEEKHKYLD 150

[Close]

BLAST of Cla011332 vs. NCBI nr
Match: gi|568844851|ref|XP_006476294.1| (PREDICTED: uncharacterized protein LOC102610275 [Citrus sinensis])

HSP 1 Score: 246.1 bits (627), Expect = 3.9e-62
Identity = 115/150 (76.67%), Postives = 132/150 (88.00%), Query Frame = 1


Query: 1   MATVIPRQDERAGAEIVYGHEECYRQSVELLKELGFPSGVLPLQELEECGMVRETGFIWM 60
           M+++  R+DERAGAEIVYG EECYR S+ELL+ELGFP GVLPLQ+LEECG VRETGF+WM
Sbjct: 1   MSSIRAREDERAGAEIVYGAEECYRHSIELLEELGFPKGVLPLQDLEECGRVRETGFVWM 60

Query: 61  KQKKPYEHFFETTKSRVAYATEVTAYVEKFKMKKMTGVKSKQLLLWVPIGEMSIEDPNRK 120
           KQ+ PYEHFFE T +RV+YA EVTAYVEKFKMKKMTGVKSKQ+ LWVPI EMSIED +  
Sbjct: 61  KQRAPYEHFFEGTNTRVSYAAEVTAYVEKFKMKKMTGVKSKQMFLWVPISEMSIEDASSN 120

Query: 121 KICFRTPVGIGKSFPVTAFMVDEEKKKYLE 151
           KI F+TP+GIGKSFP+TAFM DEEK KYL+
Sbjct: 121 KIHFKTPMGIGKSFPITAFMTDEEKHKYLD 150

[Close]

BLAST of Cla011332 vs. NCBI nr
Match: gi|566162662|ref|XP_002303689.2| (hypothetical protein POPTR_0003s14640g [Populus trichocarpa])

HSP 1 Score: 244.6 bits (623), Expect = 1.1e-61
Identity = 111/148 (75.00%), Postives = 135/148 (91.22%), Query Frame = 1


Query: 7   RQDERAGAEIVYGHEECYRQSVELLKELGFPSGVLPLQELEECGMVRETGFIWMKQKKPY 66
           ++DERAGAEIVYGHEEC+R S+ELL+ELGFP GVLPL++LEECG V+ETGF+WMKQK PY
Sbjct: 8   KEDERAGAEIVYGHEECHRHSIELLEELGFPKGVLPLKDLEECGRVKETGFVWMKQKAPY 67

Query: 67  EHFFETTKSRVAYATEVTAYVEKFKMKKMTGVKSKQLLLWVPIGEMSIEDPNRKKICFRT 126
           EHFF  + ++V+YATEVTAYVEKFKMKKMTG+KSKQ+ LWVP+ EMSIE+P+RKKI F+T
Sbjct: 68  EHFFVGSNTKVSYATEVTAYVEKFKMKKMTGIKSKQMFLWVPLSEMSIENPSRKKILFKT 127

Query: 127 PVGIGKSFPVTAFMVDEEKKKYLEKVEE 155
           P+GIGKSFPV+AFM DEEK++  EK+EE
Sbjct: 128 PMGIGKSFPVSAFMTDEEKQEQQEKLEE 155

The following BLAST results are available for this feature:

BLAST of Cla011332 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK90_CUCSA	3.7e-75	89.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G148540 PE=4 SV=1	[more]
V4SX21_9ROSI	2.7e-62	76.67	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022654mg PE=4 SV=1	[more]
A9PAE0_POPTR	8.0e-62	75.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14640g PE=2 SV=1	[more]
A0A061G3B3_THECC	1.8e-61	80.42	Uncharacterized protein OS=Theobroma cacao GN=TCM_015652 PE=4 SV=1	[more]
A0A0V0HRN2_SOLCH	3.3e-60	78.23	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of Cla011332 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074141\|ref\|XP_008437444.1\|	1.6e-76	90.91	PREDICTED: uncharacterized protein LOC103482858 [Cucumis melo]	[more]
gi\|778699230\|ref\|XP_004143841.2\|	5.3e-75	89.61	PREDICTED: uncharacterized protein LOC101223048 [Cucumis sativus]	[more]
gi\|567893480\|ref\|XP_006439228.1\|	3.9e-62	76.67	hypothetical protein CICLE_v10022654mg [Citrus clementina]	[more]
gi\|568844851\|ref\|XP_006476294.1\|	3.9e-62	76.67	PREDICTED: uncharacterized protein LOC102610275 [Citrus sinensis]	[more]
gi\|566162662\|ref\|XP_002303689.2\|	1.1e-61	75.00	hypothetical protein POPTR_0003s14640g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007493	DUF538

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011332	Cla011332.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007493	Protein of unknown function DUF538	GENE3D	G3DSA:2.30.240.10		coord: 11..148 score: 9.0
IPR007493	Protein of unknown function DUF538	PFAM	PF04398	DUF538	coord: 28..139 score: 1.1
IPR007493	Protein of unknown function DUF538	unknown	SSF141562	At5g01610-like	coord: 9..146 score: 1.05
None	No IPR available	PANTHER	PTHR31676	FAMILY NOT NAMED	coord: 1..150 score: 1.5
None	No IPR available	PANTHER	PTHR31676:SF20	SUBFAMILY NOT NAMED	coord: 1..150 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla011332	Cla97C01G001540	Watermelon (97103) v2	wmwmbB235
Cla011332	Csa5G148540	Cucumber (Chinese Long) v2	cuwmB408
Cla011332	MELO3C005784	Melon (DHL92) v3.5.1	mewmB029
Cla011332	ClCG01G001530	Watermelon (Charleston Gray)	wcgwmB142
Cla011332	CSPI05G04300	Wild cucumber (PI 183967)	cpiwmB416
Cla011332	CmaCh15G013130	Cucurbita maxima (Rimu)	cmawmB277
Cla011332	CmoCh15G013780	Cucurbita moschata (Rifu)	cmowmB267
Cla011332	Lsi09G001400	Bottle gourd (USVL1VR-Ls)	lsiwmB027
Cla011332	Cp4.1LG00g00670	Cucurbita pepo (Zucchini)	cpewmB013
Cla011332	CsGy5G001550	Cucumber (Gy14) v2	cgybwmB381
Cla011332	MELO3C005784.2	Melon (DHL92) v3.6.1	medwmB027
Cla011332	Carg21305	Silver-seed gourd	carwmB0352
Cla011332	CsaV3_5G001680	Cucumber (Chinese Long) v3	cucwmB433
Cla011332	Bhi12G000083	Wax gourd	wgowmB076

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla011332	Cucurbita pepo (Zucchini)	cpewmB709
Cla011332	Silver-seed gourd	carwmB0709
Cla011332	Cucumber (Gy14) v1	cgywmB552
Cla011332	Cucurbita maxima (Rimu)	cmawmB573
Cla011332	Cucurbita moschata (Rifu)	cmowmB568