Cla010848 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010848
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	40S ribosomal protein S8 (AHRD V1 ***- B9N1Y6_POPTR); contains Interpro domain(s) IPR001047 Ribosomal protein S8e
Location	Chr7 : 30378796 .. 30380209 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATGTTAGATATATTCATATTGTTTCATTTGTGACTTCGTTTTTCTTTTTGTTAATCTTGGAGGACTTTGTTTATAGGTATTTCACGTGACTCTATGCACAAGAGACGTGCGACAGGAGGAAAGAAGAAAGCTTGGAGGAAGAAGAGAAAGTAACTATCACTGCTCATATTTATTCAAGTGCAATTTTTTTCCTTTGTTTTGCTTCCATTTGCTCAAATGTAGTTGGTAACAGATCCTTGAAAATTTTCAAAATTTTTTCCTTGCCTTCTAGTTTAACAATGCCATTTTTGTAGTTTTTGCTAACATATCAACAAATTTGTGGATAAATGGTGATGTTATTGGCAAGAGTTTGTCATACTTTCTTCTCCAATATAAAATTCATTAAAGCTGAATTAATTTTTATTAGGGATCTCATTCATCTCCTTTGGTAGATTGATGTTCTTTTTTGTTCCAATAACTATCACCATTTTTTCTCAACCAAAGATGCAACTTTCATTTCTCTGTGTTTTTTAAGCCATCCTGATATGTTTCTTTCCCCTCCTTTGTAAAGGTATGAACTTGGAAGGCAACCTGCCAACACTAAGTTGTCCAGTGACAAGTCAATCAGGAGGATCAGAGTCCGTGGTGGTAATGTTAAGTGGCGTGCTTTTAGGCTTGATACTGGAAACTACTCTTGGGGCAGTGAGGCTGTGACCAGAAAGACCCGTATTCTTGATGTGGTGTACAATGCATCTAACAATGAGCTTGTTCGTACTCAAACCTTGGTGAAGAGTGCCATCGTTCAGGTTGATGCAGCACCATTCAAACAGTGGTATCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCTCAGCATCTGCCAAGAAGGAAGAGGTAGAGCAAGTTCTGTTGTTCGAGTAGTTGATTGGGTTTATTCAAATCCCTTGTATGAGTAGTTGGTGTGTTTGTAATAGATAATGTTAATCGCATTGTTACAGGTTGAAATAGTATAATATGATACAATTCATGATACATGACAGAACGTGATTTTTATGGTTGATAGGAAGGTGATGCTCCCAGTGAGGAGGTGAAGAAGAGTAACCATGTCCAACGCAAGCTGGAGAAACGTCAGCAGGATCGTAAACTTGACCCTCATATTGAAGAACAATTCAGCAGTGGTCGTTTGATGGCTTGTATCTCATCAAGACCGGGTCAATGTGGCCGAGCAGATGGGTAAGCAGTTGAAATACTTTATGATTCTGCTTCATTTTGTTGTATTCTTGTCGTTTCAAGAAGAGTGTTTGGGGAATTTTGCTGAGATTTAGCTCATTTGTGGCAGATACATCTTGGAGGGTAAAGAGCTTGAGTTCTATATGAAGAAACTTCAAAGGAAGAAGGGAAAAGGAGCTGGTGCTGCATAA

mRNA sequence

ATGGGTATTTCACGTGACTCTATGCACAAGAGACGTGCGACAGGAGGAAAGAAGAAAGCTTGGAGGAAGAAGAGAAAGTATGAACTTGGAAGGCAACCTGCCAACACTAAGTTGTCCAGTGACAAGTCAATCAGGAGGATCAGAGTCCGTGGTGGTAATGTTAAGTGGCGTGCTTTTAGGCTTGATACTGGAAACTACTCTTGGGGCAGTGAGGCTGTGACCAGAAAGACCCGTATTCTTGATGTGGTGTACAATGCATCTAACAATGAGCTTGTTCGTACTCAAACCTTGGTGAAGAGTGCCATCGTTCAGGTTGATGCAGCACCATTCAAACAGTGGTATCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCTCAGCATCTGCCAAGAAGGAAGAGGAAGGTGATGCTCCCAGTGAGGAGGTGAAGAAGAGTAACCATGTCCAACGCAAGCTGGAGAAACGTCAGCAGGATCGTAAACTTGACCCTCATATTGAAGAACAATTCAGCAGTGGTCGTTTGATGGCTTGTATCTCATCAAGACCGGGTCAATGTGGCCGAGCAGATGGATACATCTTGGAGGGTAAAGAGCTTGAGTTCTATATGAAGAAACTTCAAAGGAAGAAGGGAAAAGGAGCTGGTGCTGCATAA

Coding sequence (CDS)

ATGGGTATTTCACGTGACTCTATGCACAAGAGACGTGCGACAGGAGGAAAGAAGAAAGCTTGGAGGAAGAAGAGAAAGTATGAACTTGGAAGGCAACCTGCCAACACTAAGTTGTCCAGTGACAAGTCAATCAGGAGGATCAGAGTCCGTGGTGGTAATGTTAAGTGGCGTGCTTTTAGGCTTGATACTGGAAACTACTCTTGGGGCAGTGAGGCTGTGACCAGAAAGACCCGTATTCTTGATGTGGTGTACAATGCATCTAACAATGAGCTTGTTCGTACTCAAACCTTGGTGAAGAGTGCCATCGTTCAGGTTGATGCAGCACCATTCAAACAGTGGTATCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCTCAGCATCTGCCAAGAAGGAAGAGGAAGGTGATGCTCCCAGTGAGGAGGTGAAGAAGAGTAACCATGTCCAACGCAAGCTGGAGAAACGTCAGCAGGATCGTAAACTTGACCCTCATATTGAAGAACAATTCAGCAGTGGTCGTTTGATGGCTTGTATCTCATCAAGACCGGGTCAATGTGGCCGAGCAGATGGATACATCTTGGAGGGTAAAGAGCTTGAGTTCTATATGAAGAAACTTCAAAGGAAGAAGGGAAAAGGAGCTGGTGCTGCATAA

Protein sequence

MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTSASAKKEEEGDAPSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA

Homology

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BLAST of Cla010848 vs. Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 388.3 bits (996), Expect = 5.7e-107
Identity = 195/221 (88.24%), Postives = 202/221 (91.40%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSS+K++RR+RVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKTSASAKKEEEG---DAPSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRL 180
           DIGRKKK  A AKK+ EG   +A +EE KKSNHV RKLEKRQQ R LD HIEEQF SGRL
Sbjct: 121 DIGRKKKAPA-AKKDAEGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRL 180

Query: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA 219
           +ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA A
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGASA 220

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BLAST of Cla010848 vs. Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 387.5 bits (994), Expect = 9.7e-107
Identity = 192/221 (86.88%), Postives = 201/221 (90.95%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSS+K++RR+RVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKTSASAKKEEEG---DAPSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRL 180
           DIGRKKKT A+ K   EG   +A +EE KKSNHV RKLEKR++ R LDPHIEEQF SGRL
Sbjct: 121 DIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRL 180

Query: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA 219
           +ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK A A
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAVA 221

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BLAST of Cla010848 vs. Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 9.7e-107
Identity = 192/220 (87.27%), Postives = 203/220 (92.27%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTSASAK-KEEEGDAPSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMA 180
           +IGRKKKT+A+ K   EEG+A +EE KKSNHV  KLEKRQQ R LD HIEEQF  G+L+A
Sbjct: 121 EIGRKKKTAAAKKDTPEEGEATTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLA 180

Query: 181 CISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           CISSRPGQCG+ADG ILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 CISSRPGQCGKADGDILEGKELEFYMKKLQRKKGKGAGAA 220

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BLAST of Cla010848 vs. Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.2e-101
Identity = 180/221 (81.45%), Postives = 201/221 (90.95%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYE+GRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 DIGRKKKTSASAKKE-EEGD----APSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSG 180
           ++GRKKK+++S KK+ EEG+    A  EEVKKSNH+ RK+  RQ+ R LD HIE+QF+SG
Sbjct: 121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180

Query: 181 RLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA 217
           RL+ACISSRPGQCGRADGYILEGKELEFYMKK+Q+KKGKGA
Sbjct: 181 RLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGA 221

[Close]

BLAST of Cla010848 vs. Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.1e-101
Identity = 185/219 (84.47%), Postives = 195/219 (89.04%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYELGRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 121 DIGRKKKTSASAKKEEEGDAPSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKK  A           +EEVKKSNHVQRKLE RQ+ R LD H+EEQFSSGRL+AC
Sbjct: 121 DIGRKKKGEA---------VTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           I+SRPGQCGRADGYILEGKELEFYMKKLQ+KKGK AGAA
Sbjct: 181 IASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA 210

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BLAST of Cla010848 vs. TrEMBL
Match: A0A0A0LJA0_CUCSA (40S ribosomal protein S8 OS=Cucumis sativus GN=Csa_2G059750 PE=3 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 3.8e-118
Identity = 213/219 (97.26%), Postives = 216/219 (98.63%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTSASAKKEEEGDAPSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKTSAS KKEEEGDA +EEVKKSNHVQRK+EKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTSASVKKEEEGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of Cla010848 vs. TrEMBL
Match: A0A0A0KFT0_CUCSA (40S ribosomal protein S8 OS=Cucumis sativus GN=Csa_6G382970 PE=3 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.0e-115
Identity = 211/222 (95.05%), Postives = 217/222 (97.75%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAV+RKTRILDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTSASAKKEEEGD---APSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRL 180
           DIGRKKKT+ASAKK+EEGD   A +EEVKKSNHVQRKLEKRQ+ RKLDPHIEEQFSSGRL
Sbjct: 121 DIGRKKKTAASAKKDEEGDAAAAAAEEVKKSNHVQRKLEKRQEGRKLDPHIEEQFSSGRL 180

Query: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222

[Close]

BLAST of Cla010848 vs. TrEMBL
Match: A0A067KSQ5_JATCU (40S ribosomal protein S8 OS=Jatropha curcas GN=JCGZ_00973 PE=3 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 2.7e-111
Identity = 200/219 (91.32%), Postives = 210/219 (95.89%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTSASAKKEEEGDAPSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKK +A+ K+ EEG+  +EEVKKSNHV RKLEKRQQ RKLDPHIEEQF+ GRLMAC
Sbjct: 121 DIGRKKKVAATKKEGEEGEGATEEVKKSNHVLRKLEKRQQTRKLDPHIEEQFAGGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKK+QRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGAGAA 219

[Close]

BLAST of Cla010848 vs. TrEMBL
Match: B9SSR3_RICCO (40S ribosomal protein S8 OS=Ricinus communis GN=RCOM_0046320 PE=3 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 3.5e-111
Identity = 200/219 (91.32%), Postives = 211/219 (96.35%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPA+TKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPASTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAI+QVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTSASAKKEEEGDAPSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT+A+ K+ EEG+A +EEVKKSNHV RKLEKRQQ RKLDPHIEEQF  GRL+AC
Sbjct: 121 DIGRKKKTAAAKKEGEEGEAATEEVKKSNHVLRKLEKRQQIRKLDPHIEEQFGGGRLLAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of Cla010848 vs. TrEMBL
Match: A0A0B0N5H3_GOSAR (40S ribosomal protein S8 OS=Gossypium arboreum GN=F383_11623 PE=3 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 2.5e-109
Identity = 199/217 (91.71%), Postives = 208/217 (95.85%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTSASAKKE-EEGDAPSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMA 180
           DIGRKKK +A+AKKE EEG+  +EEVKKSNHV RKLEKRQQ RKLD HIEEQF SGRL+A
Sbjct: 121 DIGRKKKAAAAAKKEGEEGETATEEVKKSNHVLRKLEKRQQSRKLDSHIEEQFGSGRLLA 180

Query: 181 CISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA 217
           CISSRPGQCGRADGYILEGKELEFYMKK+QRKKGKGA
Sbjct: 181 CISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGA 217

[Close]

BLAST of Cla010848 vs. NCBI nr
Match: gi|659069757|ref|XP_008451649.1| (PREDICTED: 40S ribosomal protein S8-like [Cucumis melo])

HSP 1 Score: 434.5 bits (1116), Expect = 1.1e-118
Identity = 215/219 (98.17%), Postives = 217/219 (99.09%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTSASAKKEEEGDAPSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKTSASAKKEEEGDA +EEVKKSNHVQRK+EKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTSASAKKEEEGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of Cla010848 vs. NCBI nr
Match: gi|449461203|ref|XP_004148331.1| (PREDICTED: 40S ribosomal protein S8 [Cucumis sativus])

HSP 1 Score: 432.2 bits (1110), Expect = 5.5e-118
Identity = 213/219 (97.26%), Postives = 216/219 (98.63%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTSASAKKEEEGDAPSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKTSAS KKEEEGDA +EEVKKSNHVQRK+EKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTSASVKKEEEGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of Cla010848 vs. NCBI nr
Match: gi|659133447|ref|XP_008466734.1| (PREDICTED: 40S ribosomal protein S8-2 [Cucumis melo])

HSP 1 Score: 425.2 bits (1092), Expect = 6.7e-116
Identity = 212/220 (96.36%), Postives = 216/220 (98.18%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTSASAKKEEEGD-APSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMA 180
           DIGRKKKT+AS KK+EEGD A +EEVKKSNHVQRKLEKRQ+ RKLDPHIEEQFSSGRLMA
Sbjct: 121 DIGRKKKTAASTKKDEEGDAAAAEEVKKSNHVQRKLEKRQEGRKLDPHIEEQFSSGRLMA 180

Query: 181 CISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           CISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 CISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220

[Close]

BLAST of Cla010848 vs. NCBI nr
Match: gi|449464166|ref|XP_004149800.1| (PREDICTED: 40S ribosomal protein S8 [Cucumis sativus])

HSP 1 Score: 424.1 bits (1089), Expect = 1.5e-115
Identity = 211/222 (95.05%), Postives = 217/222 (97.75%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAV+RKTRILDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTSASAKKEEEGD---APSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRL 180
           DIGRKKKT+ASAKK+EEGD   A +EEVKKSNHVQRKLEKRQ+ RKLDPHIEEQFSSGRL
Sbjct: 121 DIGRKKKTAASAKKDEEGDAAAAAAEEVKKSNHVQRKLEKRQEGRKLDPHIEEQFSSGRL 180

Query: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222

[Close]

BLAST of Cla010848 vs. NCBI nr
Match: gi|802588536|ref|XP_012070941.1| (PREDICTED: 40S ribosomal protein S8 [Jatropha curcas])

HSP 1 Score: 409.5 bits (1051), Expect = 3.8e-111
Identity = 200/219 (91.32%), Postives = 210/219 (95.89%), Query Frame = 1


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTSASAKKEEEGDAPSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKK +A+ K+ EEG+  +EEVKKSNHV RKLEKRQQ RKLDPHIEEQF+ GRLMAC
Sbjct: 121 DIGRKKKVAATKKEGEEGEGATEEVKKSNHVLRKLEKRQQTRKLDPHIEEQFAGGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKK+QRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGAGAA 219

The following BLAST results are available for this feature:

BLAST of Cla010848 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS8_ORYSJ	5.7e-107	88.24	40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2	[more]
RS8_MAIZE	9.7e-107	86.88	40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2	[more]
RS8_PRUAR	9.7e-107	87.27	40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1	[more]
RS81_ARATH	1.2e-101	81.45	40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1	[more]
RS82_ARATH	2.1e-101	84.47	40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1	[more]

BLAST of Cla010848 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJA0_CUCSA	3.8e-118	97.26	40S ribosomal protein S8 OS=Cucumis sativus GN=Csa_2G059750 PE=3 SV=1	[more]
A0A0A0KFT0_CUCSA	1.0e-115	95.05	40S ribosomal protein S8 OS=Cucumis sativus GN=Csa_6G382970 PE=3 SV=1	[more]
A0A067KSQ5_JATCU	2.7e-111	91.32	40S ribosomal protein S8 OS=Jatropha curcas GN=JCGZ_00973 PE=3 SV=1	[more]
B9SSR3_RICCO	3.5e-111	91.32	40S ribosomal protein S8 OS=Ricinus communis GN=RCOM_0046320 PE=3 SV=1	[more]
A0A0B0N5H3_GOSAR	2.5e-109	91.71	40S ribosomal protein S8 OS=Gossypium arboreum GN=F383_11623 PE=3 SV=1	[more]

BLAST of Cla010848 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069757\|ref\|XP_008451649.1\|	1.1e-118	98.17	PREDICTED: 40S ribosomal protein S8-like [Cucumis melo]	[more]
gi\|449461203\|ref\|XP_004148331.1\|	5.5e-118	97.26	PREDICTED: 40S ribosomal protein S8 [Cucumis sativus]	[more]
gi\|659133447\|ref\|XP_008466734.1\|	6.7e-116	96.36	PREDICTED: 40S ribosomal protein S8-2 [Cucumis melo]	[more]
gi\|449464166\|ref\|XP_004149800.1\|	1.5e-115	95.05	PREDICTED: 40S ribosomal protein S8 [Cucumis sativus]	[more]
gi\|802588536\|ref\|XP_012070941.1\|	3.8e-111	91.32	PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001047	Ribosomal_S8e
IPR018283	Ribosomal_S8e_CS
IPR022309	Ribosomal_S8e/biogenesis_NSA2

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0009165	nucleotide biosynthetic process
biological_process	GO:0042991	transcription factor import into nucleus
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:1901700	response to oxygen-containing compound
biological_process	GO:0006950	response to stress
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU39109	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU78574	watermelon EST collection version 2.0	transcribed_cluster
WMU78659	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010848	Cla010848.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU39109	WMU39109	transcribed_cluster
WMU78574	WMU78574	transcribed_cluster
WMU78659	WMU78659	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001047	Ribosomal protein S8e	PANTHER	PTHR10394	40S RIBOSOMAL PROTEIN S8	coord: 2..214 score: 1.0E
IPR001047	Ribosomal protein S8e	TIGRFAMs	TIGR00307	TIGR00307	coord: 1..198 score: 1.4
IPR018283	Ribosomal protein S8e, conserved site	PROSITE	PS01193	RIBOSOMAL_S8E	coord: 11..30 scor
IPR022309	Ribosomal protein S8e/ribosomal biogenesis NSA2	PFAM	PF01201	Ribosomal_S8e	coord: 1..196 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010848	Cla97C07G142650	Watermelon (97103) v2	wmwmbB174
Cla010848	ClCG07G015630	Watermelon (Charleston Gray)	wcgwmB372
Cla010848	CmoCh06G016530	Cucurbita moschata (Rifu)	cmowmB788
Cla010848	Cp4.1LG08g06000	Cucurbita pepo (Zucchini)	cpewmB840
Cla010848	Carg15475	Silver-seed gourd	carwmB0690

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010848	Cucumber (Chinese Long) v3	cucwmB325
Cla010848	Cucumber (Chinese Long) v3	cucwmB331
Cla010848	Wax gourd	wgowmB182
Cla010848	Wax gourd	wgowmB196
Cla010848	Cucumber (Gy14) v1	cgywmB118
Cla010848	Cucurbita maxima (Rimu)	cmawmB235
Cla010848	Cucurbita maxima (Rimu)	cmawmB794
Cla010848	Cucurbita moschata (Rifu)	cmowmB222
Cla010848	Melon (DHL92) v3.5.1	mewmB507
Cla010848	Cucumber (Chinese Long) v2	cuwmB313
Cla010848	Cucurbita pepo (Zucchini)	cpewmB604
Cla010848	Bottle gourd (USVL1VR-Ls)	lsiwmB442
Cla010848	Cucumber (Gy14) v2	cgybwmB291
Cla010848	Melon (DHL92) v3.6.1	medwmB492