CmoCh06G016530 (gene) Cucurbita moschata (Rifu)

NameCmoCh06G016530
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description40S ribosomal protein S8
LocationCmo_Chr06 : 11466832 .. 11468559 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTAAGCTTTGAAATCGGGCTTGGCAGGTTAGCAATCACTAAATAATTTTGGTTTCTGATTTTGATTGATAGGATTTGAGTTCTATATTCTAATGGTTTTAAGCTTTGAAATCGATTGGGAGTGTTGCGTTTTAATTGACTGGATTTTATCGTGACATTGGGGCCCTGTAATTCGACTGTTTAGTCTTTTTTTCAAAACAGTGACTACTTAGAACTGATTTAGAAAATGTGAGGTCCAAGAGTGAATTCTATAAGAAAATTGATGCGTTTAAGTCGGAGGAAGATCTAAATTTCTGATGAAATTTGGCGTTAGTTTCAATTGGGAAATCCACAGATAGTTTTCCTACTCTTTCTATGTCACACATTTGCTTTTGAAGGTTAAGGTTGAGGATTGGATCATAGTCTGCTAATTCTTTGACTTGTTTTCAAACAGGAACTTTAGAACTCCTCTTCCCAGAAGAGCTCTCGTCTCACCAAGATGGGTATGTTAGATACAGATTTTCATTTTGTTTCATTTGTGACGTTGTCTTCATTTTCGTTAATCTTGGAGAACTTTGTGCATAGGTATTTCTCGTGATTCTATGCACTAGAGGCGTGGCATTGGAGGAAAGAAGAAGGCTGGGAGGAAGAAGAGAAAGTAACTATCTCTGCTCATATTGCCCAAATTAGTTGCTAACAGGTATATAGAATTGTCCAGGATTGTTGGGAGGGAGTCCTACGCTGGCTAATTTAGGAAATGATCATGGGTTTATAAGTAAAGAATACATCTCCATTGGTACGAGGCTTTTTGGGAAACTAAAAGCAAAACCATGAGAGCTTATGTTGGTAATGTGAAGTGGCGTGGATTTAGGCTCGATACTGGAAACTACTCTTGGGGTAGTGAGGCTGTGACGAGAAAGACCCGTATTCCCGATGTGGTGTACAATGCATCTAACAGCGAGCTTGTTCGTACTCAAACCTTGGTGAAATTGTTCAGGTTGATGCAGCACCATTCAAACAGTGGTACCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCTCAGCAGCTGCTAAGAAGGACAAGGTAGAACAAACTTCGGTAGTTCGAGTGATTTGAGCACCTGTTTTTTATGGGAATGATATACATGATCCTTAAACACAACTTGTTTTGTATGATCGGTAGGAAGGTGATGCTCCGAGCGAGGAGGCGACGAAGAGCAACCATGTCAGCAGGATCGTAAGCTTGATCCTCATATTGAAGAACAATTCAGCGGTGGTCGTTTGATGGCCTGTATCTCATCAAGACCGGGTCAATGCGATCGGCTCGATGGGTAAGCAGTTGAAATGCCTTGTGATCTAGCTTGTCTTTGATGTATTCTTGTCGCAACTTGTTTGAGCGCGAACATCGAAGCGTTTTTGGTGAGTCTTGCTGAGTTTTTAGCCTATTTGGAGGGCAAAGATTTCGAGTTCTACATGAAGAACCTTCAAAGGAAGAAGGGAAAAGGAGCTGGTGCTGCTTAAGTCAGTGTATCATTGAGATGTTTTGTCCCATTTCAGTAGCCATTTCTTCGTTTGAAGACGATTAGATGTTGCAGCAAAGATGAAAGAGTAGCTTAGGAGCTTTAGTTTTACTGATATTAGTTTGTTCAATATAAACCCTAAACTTTTGGGATCATTTAATAATTATTAGTGAATTATGGGTGACATAGTTTCTTATTTAACAAACAGACCATAA

mRNA sequence

ATGGTTTTAAGCTTTGAAATCGGGCTTGGCAGGAACTTTAGAACTCCTCTTCCCAGAAGAGCTCTCGTCTCACCAAGATGGGTTGATGCAGCACCATTCAAACAGTGGTACCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCTCAGCAGCTGCTAAGAAGGACAAGGAAGGTGATGCTCCGAGCGAGGAGGCGACGAAGAGCAACCATGTCAGCAGGATCGTAAGCTTGATCCTCATATTGAAGAACAATTCAGCGGTGGTCGTTTGATGGCCTGTATCTCATCAAGACCGGGTCAATGCGATCGGCTCGATGGGTAAGCAGTTGAAATGCCTTGTGATCTAGCTTGTCTTTGATGTATTCTTGTCGCAACTTGTTTGAGCGCGAACATCGAAGCGTTTTTGGTGAGTCTTGCTGAGTTTTTAGCCTATTTGGAGGGCAAAGATTTCGAGTTCTACATGAAGAACCTTCAAAGGAAGAAGGGAAAAGGAGCTGGTGCTGCTTAAGTCAGTGTATCATTGAGATGTTTTGTCCCATTTCAGTAGCCATTTCTTCGTTTGAAGACGATTAGATGTTGCAGCAAAGATGAAAGAGTAGCTTAGGAGCTTTAGTTTTACTGATATTAGTTTGTTCAATATAAACCCTAAACTTTTGGGATCATTTAATAATTATTAGTGAATTATGGGTGACATAGTTTCTTATTTAACAAACAGACCATAA

Coding sequence (CDS)

ATGGTTTTAAGCTTTGAAATCGGGCTTGGCAGGAACTTTAGAACTCCTCTTCCCAGAAGAGCTCTCGTCTCACCAAGATGGGTTGATGCAGCACCATTCAAACAGTGGTACCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCTCAGCAGCTGCTAAGAAGGACAAGGAAGGTGATGCTCCGAGCGAGGAGGCGACGAAGAGCAACCATGTCAGCAGGATCGTAAGCTTGATCCTCATATTGAAGAACAATTCAGCGGTGGTCGTTTGA
BLAST of CmoCh06G016530 vs. Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-13
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKD--KEGDAPSEEATKSNHVS 76
           VDAAPFKQWYLQHYGV+IGRKKKT AAAKKD  +EG+A +EEA KSNHV+
Sbjct: 105 VDAAPFKQWYLQHYGVEIGRKKKT-AAAKKDTPEEGEATTEEAKKSNHVA 153

BLAST of CmoCh06G016530 vs. Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-12
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEG---DAPSEEATKSNHVSR 77
           VDAAPFKQWYL HYGVDIGRKKKT AA K + EG   +A +EE  KSNHV+R
Sbjct: 105 VDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTR 156

BLAST of CmoCh06G016530 vs. Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-12
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEG---DAPSEEATKSNHVSR 77
           VDAAPFKQWYL HYGVDIGRKKK + AAKKD EG   +A +EEA KSNHV R
Sbjct: 105 VDAAPFKQWYLTHYGVDIGRKKK-APAAKKDAEGQDAEATTEEAKKSNHVVR 155

BLAST of CmoCh06G016530 vs. Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-10
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKD-KEGD----APSEEATKSNHVSRIVS 80
           VDAAPFKQWYL HYGV++GRKKK++++ KKD +EG+    A  EE  KSNH+ R ++
Sbjct: 105 VDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIA 161

BLAST of CmoCh06G016530 vs. Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.7e-08
Identity = 31/49 (63.27%), Postives = 32/49 (65.31%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR 77
           VDAAPFKQ YLQHYGVDIGRKKK  A           +EE  KSNHV R
Sbjct: 105 VDAAPFKQGYLQHYGVDIGRKKKGEAVT---------TEEVKKSNHVQR 144

BLAST of CmoCh06G016530 vs. TrEMBL
Match: A0A0A0LJA0_CUCSA (40S ribosomal protein S8 OS=Cucumis sativus GN=Csa_2G059750 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-14
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR 77
           VDAAPFKQWYLQHYGVDIGRKKKTSA+ KK++EGDA +EE  KSNHV R
Sbjct: 105 VDAAPFKQWYLQHYGVDIGRKKKTSASVKKEEEGDAGTEEVKKSNHVQR 153

BLAST of CmoCh06G016530 vs. TrEMBL
Match: M5XI18_PRUPE (40S ribosomal protein S8 OS=Prunus persica GN=PRUPE_ppa011148mg PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKD--KEGDAPSEEATKSNHVSR 77
           VDAAPFKQWYLQHYGV+IGRKKKT+AAAKKD  +EG+A +EEA KSNHV+R
Sbjct: 105 VDAAPFKQWYLQHYGVEIGRKKKTAAAAKKDTPEEGEATTEEAKKSNHVAR 155

BLAST of CmoCh06G016530 vs. TrEMBL
Match: A0A0A0KFT0_CUCSA (40S ribosomal protein S8 OS=Cucumis sativus GN=Csa_6G382970 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-13
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGD---APSEEATKSNHVSR 77
           VDAAPFKQWYLQHYGVDIGRKKKT+A+AKKD+EGD   A +EE  KSNHV R
Sbjct: 105 VDAAPFKQWYLQHYGVDIGRKKKTAASAKKDEEGDAAAAAAEEVKKSNHVQR 156

BLAST of CmoCh06G016530 vs. TrEMBL
Match: A0A0A9K8T9_ARUDO (40S ribosomal protein S8 OS=Arundo donax PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.3e-13
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKD----KEGDAPSEEATKSNHVSR 77
           VDAAPFKQWYL HYGVDIGRKKKT+AAAKKD    +EG+A +EEA KSNHV R
Sbjct: 105 VDAAPFKQWYLTHYGVDIGRKKKTAAAAKKDIAEGQEGEAAAEEAKKSNHVQR 157

BLAST of CmoCh06G016530 vs. TrEMBL
Match: B9SSR3_RICCO (40S ribosomal protein S8 OS=Ricinus communis GN=RCOM_0046320 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.0e-13
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR 77
           VDAAPFKQWYLQHYGVDIGRKKKT+AA K+ +EG+A +EE  KSNHV R
Sbjct: 105 VDAAPFKQWYLQHYGVDIGRKKKTAAAKKEGEEGEAATEEVKKSNHVLR 153

BLAST of CmoCh06G016530 vs. TAIR10
Match: AT5G20290.1 (AT5G20290.1 Ribosomal protein S8e family protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-11
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKD-KEGD----APSEEATKSNHVSRIVS 80
           VDAAPFKQWYL HYGV++GRKKK++++ KKD +EG+    A  EE  KSNH+ R ++
Sbjct: 105 VDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIA 161

BLAST of CmoCh06G016530 vs. TAIR10
Match: AT5G59240.1 (AT5G59240.1 Ribosomal protein S8e family protein)

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-09
Identity = 31/49 (63.27%), Postives = 32/49 (65.31%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR 77
           VDAAPFKQ YLQHYGVDIGRKKK  A           +EE  KSNHV R
Sbjct: 105 VDAAPFKQGYLQHYGVDIGRKKKGEAVT---------TEEVKKSNHVQR 144

BLAST of CmoCh06G016530 vs. NCBI nr
Match: gi|659069757|ref|XP_008451649.1| (PREDICTED: 40S ribosomal protein S8-like [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR 77
           VDAAPFKQWYLQHYGVDIGRKKKTSA+AKK++EGDA +EE  KSNHV R
Sbjct: 105 VDAAPFKQWYLQHYGVDIGRKKKTSASAKKEEEGDAGTEEVKKSNHVQR 153

BLAST of CmoCh06G016530 vs. NCBI nr
Match: gi|449461203|ref|XP_004148331.1| (PREDICTED: 40S ribosomal protein S8 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR 77
           VDAAPFKQWYLQHYGVDIGRKKKTSA+ KK++EGDA +EE  KSNHV R
Sbjct: 105 VDAAPFKQWYLQHYGVDIGRKKKTSASVKKEEEGDAGTEEVKKSNHVQR 153

BLAST of CmoCh06G016530 vs. NCBI nr
Match: gi|1012233063|ref|XP_015938912.1| (PREDICTED: 40S ribosomal protein S8-like [Arachis duranensis])

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-13
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR 77
           VDAAPFKQWYLQHYGVDIGRKKKT+AA K  +EG+ P+EEA KSNHV R
Sbjct: 105 VDAAPFKQWYLQHYGVDIGRKKKTAAAKKDAEEGETPAEEAKKSNHVQR 153

BLAST of CmoCh06G016530 vs. NCBI nr
Match: gi|1021570392|ref|XP_016176378.1| (PREDICTED: 40S ribosomal protein S8-like [Arachis ipaensis])

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-13
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR 77
           VDAAPFKQWYLQHYGVDIGRKKKT+AA K  +EG+ P+EEA KSNHV R
Sbjct: 105 VDAAPFKQWYLQHYGVDIGRKKKTAAAKKDAEEGETPTEEAKKSNHVQR 153

BLAST of CmoCh06G016530 vs. NCBI nr
Match: gi|596217859|ref|XP_007223947.1| (hypothetical protein PRUPE_ppa011148mg [Prunus persica])

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1

Query: 28  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKD--KEGDAPSEEATKSNHVSR 77
           VDAAPFKQWYLQHYGV+IGRKKKT+AAAKKD  +EG+A +EEA KSNHV+R
Sbjct: 105 VDAAPFKQWYLQHYGVEIGRKKKTAAAAKKDTPEEGEATTEEAKKSNHVAR 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RS8_PRUAR1.5e-1380.0040S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1[more]
RS8_MAIZE1.7e-1271.1540S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2[more]
RS8_ORYSJ3.8e-1275.0040S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2[more]
RS81_ARATH3.5e-1057.8940S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1[more]
RS82_ARATH5.7e-0863.2740S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LJA0_CUCSA2.2e-1481.6340S ribosomal protein S8 OS=Cucumis sativus GN=Csa_2G059750 PE=3 SV=1[more]
M5XI18_PRUPE1.4e-1380.3940S ribosomal protein S8 OS=Prunus persica GN=PRUPE_ppa011148mg PE=3 SV=1[more]
A0A0A0KFT0_CUCSA1.8e-1378.8540S ribosomal protein S8 OS=Cucumis sativus GN=Csa_6G382970 PE=3 SV=1[more]
A0A0A9K8T9_ARUDO5.3e-1377.3640S ribosomal protein S8 OS=Arundo donax PE=3 SV=1[more]
B9SSR3_RICCO7.0e-1377.5540S ribosomal protein S8 OS=Ricinus communis GN=RCOM_0046320 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G20290.12.0e-1157.89 Ribosomal protein S8e family protein[more]
AT5G59240.13.2e-0963.27 Ribosomal protein S8e family protein[more]
Match NameE-valueIdentityDescription
gi|659069757|ref|XP_008451649.1|1.1e-1483.67PREDICTED: 40S ribosomal protein S8-like [Cucumis melo][more]
gi|449461203|ref|XP_004148331.1|3.1e-1481.63PREDICTED: 40S ribosomal protein S8 [Cucumis sativus][more]
gi|1012233063|ref|XP_015938912.1|1.5e-1379.59PREDICTED: 40S ribosomal protein S8-like [Arachis duranensis][more]
gi|1021570392|ref|XP_016176378.1|1.5e-1379.59PREDICTED: 40S ribosomal protein S8-like [Arachis ipaensis][more]
gi|596217859|ref|XP_007223947.1|2.0e-1380.39hypothetical protein PRUPE_ppa011148mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001047Ribosomal_S8e
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0042991 transcription factor import into nucleus
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016020 membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G016530.1CmoCh06G016530.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001047Ribosomal protein S8ePANTHERPTHR1039440S RIBOSOMAL PROTEIN S8coord: 28..76
score: 2.4
NoneNo IPR availablePANTHERPTHR10394:SF4SUBFAMILY NOT NAMEDcoord: 28..76
score: 2.4

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh06G016530Cla010848Watermelon (97103) v1cmowmB788
CmoCh06G016530ClCG07G015630Watermelon (Charleston Gray)cmowcgB749
CmoCh06G016530Cp4.1LG08g06000Cucurbita pepo (Zucchini)cmocpeB796
CmoCh06G016530Cla97C07G142650Watermelon (97103) v2cmowmbB840
The following gene(s) are paralogous to this gene:

None