CmoCh06G016530 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTTTAAGCTTTGAAATCGGGCTTGGCAGGTTAGCAATCACTAAATAATTTTGGTTTCTGATTTTGATTGATAGGATTTGAGTTCTATATTCTAATGGTTTTAAGCTTTGAAATCGATTGGGAGTGTTGCGTTTTAATTGACTGGATTTTATCGTGACATTGGGGCCCTGTAATTCGACTGTTTAGTCTTTTTTTCAAAACAGTGACTACTTAGAACTGATTTAGAAAATGTGAGGTCCAAGAGTGAATTCTATAAGAAAATTGATGCGTTTAAGTCGGAGGAAGATCTAAATTTCTGATGAAATTTGGCGTTAGTTTCAATTGGGAAATCCACAGATAGTTTTCCTACTCTTTCTATGTCACACATTTGCTTTTGAAGGTTAAGGTTGAGGATTGGATCATAGTCTGCTAATTCTTTGACTTGTTTTCAAACAGGAACTTTAGAACTCCTCTTCCCAGAAGAGCTCTCGTCTCACCAAGATGGGTATGTTAGATACAGATTTTCATTTTGTTTCATTTGTGACGTTGTCTTCATTTTCGTTAATCTTGGAGAACTTTGTGCATAGGTATTTCTCGTGATTCTATGCACTAGAGGCGTGGCATTGGAGGAAAGAAGAAGGCTGGGAGGAAGAAGAGAAAGTAACTATCTCTGCTCATATTGCCCAAATTAGTTGCTAACAGGTATATAGAATTGTCCAGGATTGTTGGGAGGGAGTCCTACGCTGGCTAATTTAGGAAATGATCATGGGTTTATAAGTAAAGAATACATCTCCATTGGTACGAGGCTTTTTGGGAAACTAAAAGCAAAACCATGAGAGCTTATGTTGGTAATGTGAAGTGGCGTGGATTTAGGCTCGATACTGGAAACTACTCTTGGGGTAGTGAGGCTGTGACGAGAAAGACCCGTATTCCCGATGTGGTGTACAATGCATCTAACAGCGAGCTTGTTCGTACTCAAACCTTGGTGAAATTGTTCAGGTTGATGCAGCACCATTCAAACAGTGGTACCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCTCAGCAGCTGCTAAGAAGGACAAGGTAGAACAAACTTCGGTAGTTCGAGTGATTTGAGCACCTGTTTTTTATGGGAATGATATACATGATCCTTAAACACAACTTGTTTTGTATGATCGGTAGGAAGGTGATGCTCCGAGCGAGGAGGCGACGAAGAGCAACCATGTCAGCAGGATCGTAAGCTTGATCCTCATATTGAAGAACAATTCAGCGGTGGTCGTTTGATGGCCTGTATCTCATCAAGACCGGGTCAATGCGATCGGCTCGATGGGTAAGCAGTTGAAATGCCTTGTGATCTAGCTTGTCTTTGATGTATTCTTGTCGCAACTTGTTTGAGCGCGAACATCGAAGCGTTTTTGGTGAGTCTTGCTGAGTTTTTAGCCTATTTGGAGGGCAAAGATTTCGAGTTCTACATGAAGAACCTTCAAAGGAAGAAGGGAAAAGGAGCTGGTGCTGCTTAAGTCAGTGTATCATTGAGATGTTTTGTCCCATTTCAGTAGCCATTTCTTCGTTTGAAGACGATTAGATGTTGCAGCAAAGATGAAAGAGTAGCTTAGGAGCTTTAGTTTTACTGATATTAGTTTGTTCAATATAAACCCTAAACTTTTGGGATCATTTAATAATTATTAGTGAATTATGGGTGACATAGTTTCTTATTTAACAAACAGACCATAA ATGGTTTTAAGCTTTGAAATCGGGCTTGGCAGGAACTTTAGAACTCCTCTTCCCAGAAGAGCTCTCGTCTCACCAAGATGGGTTGATGCAGCACCATTCAAACAGTGGTACCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCTCAGCAGCTGCTAAGAAGGACAAGGAAGGTGATGCTCCGAGCGAGGAGGCGACGAAGAGCAACCATGTCAGCAGGATCGTAAGCTTGATCCTCATATTGAAGAACAATTCAGCGGTGGTCGTTTGATGGCCTGTATCTCATCAAGACCGGGTCAATGCGATCGGCTCGATGGGTAAGCAGTTGAAATGCCTTGTGATCTAGCTTGTCTTTGATGTATTCTTGTCGCAACTTGTTTGAGCGCGAACATCGAAGCGTTTTTGGTGAGTCTTGCTGAGTTTTTAGCCTATTTGGAGGGCAAAGATTTCGAGTTCTACATGAAGAACCTTCAAAGGAAGAAGGGAAAAGGAGCTGGTGCTGCTTAAGTCAGTGTATCATTGAGATGTTTTGTCCCATTTCAGTAGCCATTTCTTCGTTTGAAGACGATTAGATGTTGCAGCAAAGATGAAAGAGTAGCTTAGGAGCTTTAGTTTTACTGATATTAGTTTGTTCAATATAAACCCTAAACTTTTGGGATCATTTAATAATTATTAGTGAATTATGGGTGACATAGTTTCTTATTTAACAAACAGACCATAA ATGGTTTTAAGCTTTGAAATCGGGCTTGGCAGGAACTTTAGAACTCCTCTTCCCAGAAGAGCTCTCGTCTCACCAAGATGGGTTGATGCAGCACCATTCAAACAGTGGTACCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCTCAGCAGCTGCTAAGAAGGACAAGGAAGGTGATGCTCCGAGCGAGGAGGCGACGAAGAGCAACCATGTCAGCAGGATCGTAAGCTTGATCCTCATATTGAAGAACAATTCAGCGGTGGTCGTTTGA
BLAST of CmoCh06G016530 vs. Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 1.5e-13 Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1
BLAST of CmoCh06G016530 vs. Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2) HSP 1 Score: 73.2 bits (178), Expect = 1.7e-12 Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 1
BLAST of CmoCh06G016530 vs. Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2) HSP 1 Score: 72.0 bits (175), Expect = 3.8e-12 Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 1
BLAST of CmoCh06G016530 vs. Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 3.5e-10 Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1
BLAST of CmoCh06G016530 vs. Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 5.7e-08 Identity = 31/49 (63.27%), Postives = 32/49 (65.31%), Query Frame = 1
BLAST of CmoCh06G016530 vs. TrEMBL
Match: A0A0A0LJA0_CUCSA (40S ribosomal protein S8 OS=Cucumis sativus GN=Csa_2G059750 PE=3 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 2.2e-14 Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1
BLAST of CmoCh06G016530 vs. TrEMBL
Match: M5XI18_PRUPE (40S ribosomal protein S8 OS=Prunus persica GN=PRUPE_ppa011148mg PE=3 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13 Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1
BLAST of CmoCh06G016530 vs. TrEMBL
Match: A0A0A0KFT0_CUCSA (40S ribosomal protein S8 OS=Cucumis sativus GN=Csa_6G382970 PE=3 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 1.8e-13 Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 1
BLAST of CmoCh06G016530 vs. TrEMBL
Match: A0A0A9K8T9_ARUDO (40S ribosomal protein S8 OS=Arundo donax PE=3 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 5.3e-13 Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 1
BLAST of CmoCh06G016530 vs. TrEMBL
Match: B9SSR3_RICCO (40S ribosomal protein S8 OS=Ricinus communis GN=RCOM_0046320 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 7.0e-13 Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1
BLAST of CmoCh06G016530 vs. TAIR10
Match: AT5G20290.1 (AT5G20290.1 Ribosomal protein S8e family protein) HSP 1 Score: 65.5 bits (158), Expect = 2.0e-11 Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1
BLAST of CmoCh06G016530 vs. TAIR10
Match: AT5G59240.1 (AT5G59240.1 Ribosomal protein S8e family protein) HSP 1 Score: 58.2 bits (139), Expect = 3.2e-09 Identity = 31/49 (63.27%), Postives = 32/49 (65.31%), Query Frame = 1
BLAST of CmoCh06G016530 vs. NCBI nr
Match: gi|659069757|ref|XP_008451649.1| (PREDICTED: 40S ribosomal protein S8-like [Cucumis melo]) HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14 Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1
BLAST of CmoCh06G016530 vs. NCBI nr
Match: gi|449461203|ref|XP_004148331.1| (PREDICTED: 40S ribosomal protein S8 [Cucumis sativus]) HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14 Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1
BLAST of CmoCh06G016530 vs. NCBI nr
Match: gi|1012233063|ref|XP_015938912.1| (PREDICTED: 40S ribosomal protein S8-like [Arachis duranensis]) HSP 1 Score: 84.0 bits (206), Expect = 1.5e-13 Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1
BLAST of CmoCh06G016530 vs. NCBI nr
Match: gi|1021570392|ref|XP_016176378.1| (PREDICTED: 40S ribosomal protein S8-like [Arachis ipaensis]) HSP 1 Score: 84.0 bits (206), Expect = 1.5e-13 Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1
BLAST of CmoCh06G016530 vs. NCBI nr
Match: gi|596217859|ref|XP_007223947.1| (hypothetical protein PRUPE_ppa011148mg [Prunus persica]) HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13 Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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