Cla010759 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010759
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 29589679 .. 29590062 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACTTTCATCAAACACCAAGACTGCAACAATGGTGATGCCATCAATGGCGATTTTGATTATGATTCTGCTGCTGAATCCAACCATTTCCAATGCCGCCGTCAACGATACCGCATCCAAGTGGTGCGACAGAGCCCTGGAGAACTGTCTGGTCGGCGGCTTCAACTCCGATTCCGAGTTTCTGATGAAGATACACACCAGCCGGATGCTGCTGGACTATGACATATTTCAAACTCCCAAAACCAACGACCCTAACAAAGAATCGGTTCCGAGCTGTGATCGGCCGCCTCGCTATGACAGCTGTCTCGGCCAGAAAAAAAGTATCCCGTTGCCGGAAAATTGCGAACCCCGAAATCGCGCCAATCCCTGTCCTGTTATATAG

mRNA sequence

ATGGGACTTTCATCAAACACCAAGACTGCAACAATGGTGATGCCATCAATGGCGATTTTGATTATGATTCTGCTGCTGAATCCAACCATTTCCAATGCCGCCGTCAACGATACCGCATCCAAGTGGTGCGACAGAGCCCTGGAGAACTGTCTGGTCGGCGGCTTCAACTCCGATTCCGAGTTTCTGATGAAGATACACACCAGCCGGATGCTGCTGGACTATGACATATTTCAAACTCCCAAAACCAACGACCCTAACAAAGAATCGGTTCCGAGCTGTGATCGGCCGCCTCGCTATGACAGCTGTCTCGGCCAGAAAAAAAGTATCCCGTTGCCGGAAAATTGCGAACCCCGAAATCGCGCCAATCCCTGTCCTGTTATATAG

Coding sequence (CDS)

ATGGGACTTTCATCAAACACCAAGACTGCAACAATGGTGATGCCATCAATGGCGATTTTGATTATGATTCTGCTGCTGAATCCAACCATTTCCAATGCCGCCGTCAACGATACCGCATCCAAGTGGTGCGACAGAGCCCTGGAGAACTGTCTGGTCGGCGGCTTCAACTCCGATTCCGAGTTTCTGATGAAGATACACACCAGCCGGATGCTGCTGGACTATGACATATTTCAAACTCCCAAAACCAACGACCCTAACAAAGAATCGGTTCCGAGCTGTGATCGGCCGCCTCGCTATGACAGCTGTCTCGGCCAGAAAAAAAGTATCCCGTTGCCGGAAAATTGCGAACCCCGAAATCGCGCCAATCCCTGTCCTGTTATATAG

Protein sequence

MGLSSNTKTATMVMPSMAILIMILLLNPTISNAAVNDTASKWCDRALENCLVGGFNSDSEFLMKIHTSRMLLDYDIFQTPKTNDPNKESVPSCDRPPRYDSCLGQKKSIPLPENCEPRNRANPCPVI

Homology

[Close]

BLAST of Cla010759 vs. TrEMBL
Match: A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.3e-38
Identity = 84/124 (67.74%), Postives = 91/124 (73.39%), Query Frame = 1


Query: 3   LSSNTKTATMVMPSMAILIMILLLNPTISNAAVNDTASKWCDRA-LENCLVGGFNSDSEF 62
           L SN+  AT+ MPSMA LI ILLLNP ISNA +NDT SKWCD   LENCLVG  NS SEF
Sbjct: 4   LPSNSMAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEF 63

Query: 63  LMKIHTSRMLLDYDI-FQTPKTNDPNKESVPSCDRPPRYDSCLGQKKSIPLPENCEPRNR 122
           LM   +S ML+D  + FQTPK ND NKESVP C RPPRYDSCLG K+SIP PE C   NR
Sbjct: 64  LMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNR 123

Query: 123 ANPC 125
            NPC
Sbjct: 124 VNPC 127

[Close]

BLAST of Cla010759 vs. TrEMBL
Match: A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.4e-33
Identity = 70/114 (61.40%), Postives = 85/114 (74.56%), Query Frame = 1


Query: 11  TMVMPSMAILIMILLLNPTISNAAVNDTASKWCDRALENCLVGGFNSDSEFLMKIHTSRM 70
           T  +P+MAILI+ LL NPT  N  VN+T S+WC  + ENCLVG  + DSEFLM+  TSRM
Sbjct: 4   TFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGS-ENCLVGDESLDSEFLMETETSRM 63

Query: 71  LLDYDIFQTPKTNDPNKESVPSCDRPPRYDSCLGQKKSIPLPENCEPRNRANPC 125
           LLD+   QTP T DPN++SV  C RPPRYDSC G+++ IP PENC+ RNRANPC
Sbjct: 64  LLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of Cla010759 vs. TrEMBL
Match: A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.9e-15
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 1


Query: 10  ATMVMPSMAILIMILLLNPTISNAAVNDTASKWCDRALEN--CLVGGFNSDSEFLMKIHT 69
           A+ +M   A++ MILLL+   S  A+        + +      ++G  + + EFLM+ H 
Sbjct: 3   ASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMESHI 62

Query: 70  SRMLLDYDIFQTPKTNDPNKESVPSCDRPPRYDSCLGQKKSIPLPENCEPRNRANPC 125
           SR+L     +QT  T + NK S   CDRPPRYDSCLG+K++ P P NC P NRANPC
Sbjct: 63  SRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of Cla010759 vs. TrEMBL
Match: A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = 1


Query: 7   TKTATMVMPSMAILIMILLLNPTISNAAVND--TASKWCDRALENCLVGGFNSDSEFLMK 66
           T  A M+  +MA+++M+L+  PT    A+      +      L   +V   +  S F+M+
Sbjct: 3   TAPALMIPAAMAMMLMMLI--PTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVME 62

Query: 67  IHTSRMLLDYDIFQTPKTNDPNKESVPSCDRPPRYDSCLGQKKSIPLPENCEPRNRANPC 125
            H SRML D   F+T  TN+  + S   CDRPPRYDSCLG K++ P P+NC   NR +PC
Sbjct: 63  SHISRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of Cla010759 vs. TrEMBL
Match: A0A0A0L9X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 58  DSEFLMKIHTSRMLLDYDIFQTPKTNDPNKESVPSCDRPPRYDSCLGQKKSIPLPENCEP 117
           D++FLM+ H SR+L +   F+T +T + N  SV +C+RPPRYDSCLG+ +  P  ENC+P
Sbjct: 49  DTDFLMESHVSRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDP 108

Query: 118 RNRANPC 125
            NRANPC
Sbjct: 109 YNRANPC 114

[Close]

BLAST of Cla010759 vs. NCBI nr
Match: gi|700198640|gb|KGN53798.1| (hypothetical protein Csa_4G130630 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 3.3e-38
Identity = 84/124 (67.74%), Postives = 91/124 (73.39%), Query Frame = 1


Query: 3   LSSNTKTATMVMPSMAILIMILLLNPTISNAAVNDTASKWCDRA-LENCLVGGFNSDSEF 62
           L SN+  AT+ MPSMA LI ILLLNP ISNA +NDT SKWCD   LENCLVG  NS SEF
Sbjct: 4   LPSNSMAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEF 63

Query: 63  LMKIHTSRMLLDYDI-FQTPKTNDPNKESVPSCDRPPRYDSCLGQKKSIPLPENCEPRNR 122
           LM   +S ML+D  + FQTPK ND NKESVP C RPPRYDSCLG K+SIP PE C   NR
Sbjct: 64  LMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNR 123

Query: 123 ANPC 125
            NPC
Sbjct: 124 VNPC 127

[Close]

BLAST of Cla010759 vs. NCBI nr
Match: gi|700198642|gb|KGN53800.1| (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-32
Identity = 70/114 (61.40%), Postives = 85/114 (74.56%), Query Frame = 1


Query: 11  TMVMPSMAILIMILLLNPTISNAAVNDTASKWCDRALENCLVGGFNSDSEFLMKIHTSRM 70
           T  +P+MAILI+ LL NPT  N  VN+T S+WC  + ENCLVG  + DSEFLM+  TSRM
Sbjct: 4   TFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGS-ENCLVGDESLDSEFLMETETSRM 63

Query: 71  LLDYDIFQTPKTNDPNKESVPSCDRPPRYDSCLGQKKSIPLPENCEPRNRANPC 125
           LLD+   QTP T DPN++SV  C RPPRYDSC G+++ IP PENC+ RNRANPC
Sbjct: 64  LLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of Cla010759 vs. NCBI nr
Match: gi|700202648|gb|KGN57781.1| (hypothetical protein Csa_3G298580 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 1


Query: 10  ATMVMPSMAILIMILLLNPTISNAAVNDTASKWCDRALEN--CLVGGFNSDSEFLMKIHT 69
           A+ +M   A++ MILLL+   S  A+        + +      ++G  + + EFLM+ H 
Sbjct: 3   ASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMESHI 62

Query: 70  SRMLLDYDIFQTPKTNDPNKESVPSCDRPPRYDSCLGQKKSIPLPENCEPRNRANPC 125
           SR+L     +QT  T + NK S   CDRPPRYDSCLG+K++ P P NC P NRANPC
Sbjct: 63  SRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of Cla010759 vs. NCBI nr
Match: gi|778680757|ref|XP_011651393.1| (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = 1


Query: 7   TKTATMVMPSMAILIMILLLNPTISNAAVND--TASKWCDRALENCLVGGFNSDSEFLMK 66
           T  A M+  +MA+++M+L+  PT    A+      +      L   +V   +  S F+M+
Sbjct: 3   TAPALMIPAAMAMMLMMLI--PTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVME 62

Query: 67  IHTSRMLLDYDIFQTPKTNDPNKESVPSCDRPPRYDSCLGQKKSIPLPENCEPRNRANPC 125
            H SRML D   F+T  TN+  + S   CDRPPRYDSCLG K++ P P+NC   NR +PC
Sbjct: 63  SHISRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of Cla010759 vs. NCBI nr
Match: gi|659114334|ref|XP_008457017.1| (PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 50/126 (39.68%), Postives = 66/126 (52.38%), Query Frame = 1


Query: 9   TATMVMPSMAILIMILLLNPTISNAAVNDTASKWCDRALENCLVGGF---------NSDS 68
           TA  VM   A+ +MI++L PT    A          + L N   GG          ++ S
Sbjct: 3   TAPAVMIPAAVAMMIMMLIPTACGGAFTFF------KPLNNHTSGGLVRYNMVEEEDTKS 62

Query: 69  EFLMKIHTSRMLLDYDI-FQTPKTNDPNKESVPSCDRPPRYDSCLGQKKSIPLPENCEPR 125
            F+M+ H SRML D    F+T  TN+  + S   CDRPPRYDSCLG K++ P P+NC   
Sbjct: 63  NFVMESHISRMLADSSQDFETSSTNNATQVSTGECDRPPRYDSCLGDKRNTPPPQNCSTY 122

The following BLAST results are available for this feature:

BLAST of Cla010759 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW62_CUCSA	2.3e-38	67.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1	[more]
A0A0A0KVZ2_CUCSA	8.4e-33	61.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1	[more]
A0A0A0LCJ4_CUCSA	7.9e-15	41.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1	[more]
A0A0A0L711_CUCSA	2.3e-14	39.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1	[more]
A0A0A0L9X5_CUCSA	1.6e-12	53.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1	[more]

BLAST of Cla010759 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198640\|gb\|KGN53798.1\|	3.3e-38	67.74	hypothetical protein Csa_4G130630 [Cucumis sativus]	[more]
gi\|700198642\|gb\|KGN53800.1\|	1.2e-32	61.40	hypothetical protein Csa_4G131140 [Cucumis sativus]	[more]
gi\|700202648\|gb\|KGN57781.1\|	1.1e-14	41.88	hypothetical protein Csa_3G298580 [Cucumis sativus]	[more]
gi\|778680757\|ref\|XP_011651393.1\|	3.3e-14	39.17	PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus]	[more]
gi\|659114334\|ref\|XP_008457017.1\|	1.6e-13	39.68	PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010759	Cla010759.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010759	Csa4G130630	Cucumber (Chinese Long) v2	cuwmB309
Cla010759	CSPI04G10150	Wild cucumber (PI 183967)	cpiwmB312
Cla010759	CmaCh01G004130	Cucurbita maxima (Rimu)	cmawmB433
Cla010759	CsGy4G009780	Cucumber (Gy14) v2	cgybwmB285
Cla010759	CsaV3_4G010280	Cucumber (Chinese Long) v3	cucwmB320
Cla010759	Bhi01G001667	Wax gourd	wgowmB179

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010759	Watermelon (Charleston Gray)	wcgwmB372
Cla010759	Watermelon (97103) v2	wmwmbB174