Csa4G130630 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G130630
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 7913300 .. 7913683 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACGACTTCCATCAAACTCCATGGCTGCAACACTGACAATGCCATCAATGGCGTTTCTTATTACAATTCTTCTGCTGAACCCAATCATTTCCAATGCCGGCATGAACGATACTGAATCCAAGTGGTGCGACAGCACCGGCCTGGAAAACTGTCTGGTCGGCGACCTCAACTCCCATTCCGAGTTTCTGATGTTGACAGAGAGTAGCGGGATGCTGGTGGATCAGTTTCTGACATTTCAAACTCCCAAAGCCAATGATGCTAACAAAGAATCAGTTCCGGATTGCAGTCGGCCGCCACGCTATGATAGCTGTCTCGGCAGCAAAAGAAGTATCCCCAATCCTGAACCCTGCAGCACCCTAAATCGTGTCAATCCATGTTAG

mRNA sequence

ATGGGACGACTTCCATCAAACTCCATGGCTGCAACACTGACAATGCCATCAATGGCGTTTCTTATTACAATTCTTCTGCTGAACCCAATCATTTCCAATGCCGGCATGAACGATACTGAATCCAAGTGGTGCGACAGCACCGGCCTGGAAAACTGTCTGGTCGGCGACCTCAACTCCCATTCCGAGTTTCTGATGTTGACAGAGAGTAGCGGGATGCTGGTGGATCAGTTTCTGACATTTCAAACTCCCAAAGCCAATGATGCTAACAAAGAATCAGTTCCGGATTGCAGTCGGCCGCCACGCTATGATAGCTGTCTCGGCAGCAAAAGAAGTATCCCCAATCCTGAACCCTGCAGCACCCTAAATCGTGTCAATCCATGTTAG

Coding sequence (CDS)

ATGGGACGACTTCCATCAAACTCCATGGCTGCAACACTGACAATGCCATCAATGGCGTTTCTTATTACAATTCTTCTGCTGAACCCAATCATTTCCAATGCCGGCATGAACGATACTGAATCCAAGTGGTGCGACAGCACCGGCCTGGAAAACTGTCTGGTCGGCGACCTCAACTCCCATTCCGAGTTTCTGATGTTGACAGAGAGTAGCGGGATGCTGGTGGATCAGTTTCTGACATTTCAAACTCCCAAAGCCAATGATGCTAACAAAGAATCAGTTCCGGATTGCAGTCGGCCGCCACGCTATGATAGCTGTCTCGGCAGCAAAAGAAGTATCCCCAATCCTGAACCCTGCAGCACCCTAAATCGTGTCAATCCATGTTAG

Protein sequence

MGRLPSNSMAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC*

Homology

[Close]

BLAST of Csa4G130630 vs. TrEMBL
Match: A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 8.1e-68
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MGRLPSNSMAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSH 60
           MGRLPSNSMAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSH
Sbjct: 1   MGRLPSNSMAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSH 60

Query: 61  SEFLMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCST 120
           SEFLMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCST
Sbjct: 61  SEFLMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCST 120

Query: 121 LNRVNPC 128
           LNRVNPC
Sbjct: 121 LNRVNPC 127

[Close]

BLAST of Csa4G130630 vs. TrEMBL
Match: A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 67/119 (56.30%), Postives = 80/119 (67.23%), Query Frame = 1


Query: 9   MAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTE 68
           MA T ++P+MA LI  LL NP   N  +N+T S+WC   G ENCLVGD +  SEFLM TE
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWC--YGSENCLVGDESLDSEFLMETE 60

Query: 69  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 128
           +S ML+D F   QTP   D N++SV +C RPPRYDSC G +R IPNPE C   NR NPC
Sbjct: 61  TSRMLLD-FQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of Csa4G130630 vs. TrEMBL
Match: A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.3e-11
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 1


Query: 10  AATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTES 69
           A  L +P+   ++ ++L+      A  +        S GL   +V + +  S F+M +  
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 70  SGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 128
           S ML D    F+T   N+A + S  +C RPPRYDSCLG KR+ P P+ CST NR +PC
Sbjct: 64  SRMLADS-QDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of Csa4G130630 vs. TrEMBL
Match: A0A0A0L9X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-10
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = 1


Query: 10  AATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTES 69
           AATL++ +   ++T+LL+   +       ++  +  S+ L   L+GD+++  +FLM +  
Sbjct: 3   AATLSIRTTLAIVTLLLV--AVGCDAFIASKPVFNLSSDLGKRLIGDIDT--DFLMESHV 62

Query: 70  SGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 128
           S +L +  L F+T +  +AN  SV +C RPPRYDSCLG  R  P  E C   NR NPC
Sbjct: 63  SRILAE--LRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

[Close]

BLAST of Csa4G130630 vs. TrEMBL
Match: A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-09
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 1


Query: 53  LVGDLNSHSEFLMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSI 112
           ++G+ +   EFLM +  S +L      +QT    +ANK S   C RPPRYDSCLG KR+ 
Sbjct: 46  MMGEEDMELEFLMESHISRILASS-KNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNN 105

Query: 113 PNPEPCSTLNRVNPC 128
           P P  CS  NR NPC
Sbjct: 106 PPPPNCSPYNRANPC 119

[Close]

BLAST of Csa4G130630 vs. NCBI nr
Match: gi|700198640|gb|KGN53798.1| (hypothetical protein Csa_4G130630 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MGRLPSNSMAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSH 60
           MGRLPSNSMAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSH
Sbjct: 1   MGRLPSNSMAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSH 60

Query: 61  SEFLMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCST 120
           SEFLMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCST
Sbjct: 61  SEFLMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCST 120

Query: 121 LNRVNPC 128
           LNRVNPC
Sbjct: 121 LNRVNPC 127

[Close]

BLAST of Csa4G130630 vs. NCBI nr
Match: gi|700198642|gb|KGN53800.1| (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-28
Identity = 67/119 (56.30%), Postives = 80/119 (67.23%), Query Frame = 1


Query: 9   MAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTE 68
           MA T ++P+MA LI  LL NP   N  +N+T S+WC   G ENCLVGD +  SEFLM TE
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWC--YGSENCLVGDESLDSEFLMETE 60

Query: 69  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 128
           +S ML+D F   QTP   D N++SV +C RPPRYDSC G +R IPNPE C   NR NPC
Sbjct: 61  TSRMLLD-FQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of Csa4G130630 vs. NCBI nr
Match: gi|659114334|ref|XP_008457017.1| (PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-11
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1


Query: 53  LVGDLNSHSEFLMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSI 112
           +V + ++ S F+M +  S ML D    F+T   N+A + S  +C RPPRYDSCLG KR+ 
Sbjct: 48  MVEEEDTKSNFVMESHISRMLADSSQDFETSSTNNATQVSTGECDRPPRYDSCLGDKRNT 107

Query: 113 PNPEPCSTLNRVNPC 128
           P P+ CST NR +PC
Sbjct: 108 PPPQNCSTYNREHPC 122

[Close]

BLAST of Csa4G130630 vs. NCBI nr
Match: gi|778680757|ref|XP_011651393.1| (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 7.6e-11
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 1


Query: 10  AATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTES 69
           A  L +P+   ++ ++L+      A  +        S GL   +V + +  S F+M +  
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 70  SGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 128
           S ML D    F+T   N+A + S  +C RPPRYDSCLG KR+ P P+ CST NR +PC
Sbjct: 64  SRMLADS-QDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of Csa4G130630 vs. NCBI nr
Match: gi|700202646|gb|KGN57779.1| (hypothetical protein Csa_3G298070 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 4.9e-10
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = 1


Query: 10  AATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTES 69
           AATL++ +   ++T+LL+   +       ++  +  S+ L   L+GD+++  +FLM +  
Sbjct: 3   AATLSIRTTLAIVTLLLV--AVGCDAFIASKPVFNLSSDLGKRLIGDIDT--DFLMESHV 62

Query: 70  SGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 128
           S +L +  L F+T +  +AN  SV +C RPPRYDSCLG  R  P  E C   NR NPC
Sbjct: 63  SRILAE--LRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

The following BLAST results are available for this feature:

BLAST of Csa4G130630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW62_CUCSA	8.1e-68	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1	[more]
A0A0A0KVZ2_CUCSA	1.3e-28	56.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1	[more]
A0A0A0L711_CUCSA	5.3e-11	36.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1	[more]
A0A0A0L9X5_CUCSA	3.4e-10	37.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1	[more]
A0A0A0LCJ4_CUCSA	2.2e-09	46.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1	[more]

BLAST of Csa4G130630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198640\|gb\|KGN53798.1\|	1.2e-67	100.00	hypothetical protein Csa_4G130630 [Cucumis sativus]	[more]
gi\|700198642\|gb\|KGN53800.1\|	1.8e-28	56.30	hypothetical protein Csa_4G131140 [Cucumis sativus]	[more]
gi\|659114334\|ref\|XP_008457017.1\|	2.6e-11	46.67	PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo]	[more]
gi\|778680757\|ref\|XP_011651393.1\|	7.6e-11	36.44	PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus]	[more]
gi\|700202646\|gb\|KGN57779.1\|	4.9e-10	37.29	hypothetical protein Csa_3G298070 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G130630.1	Csa4G130630.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G130630	Cla010759	Watermelon (97103) v1	cuwmB309
Csa4G130630	Bhi01G001667	Wax gourd	cuwgoB373
Csa4G130630	CmaCh01G004130	Cucurbita maxima (Rimu)	cmacuB476
Csa4G130630	CmoCh01G004420	Cucurbita moschata (Rifu)	cmocuB465
Csa4G130630	Cp4.1LG02g13780	Cucurbita pepo (Zucchini)	cpecuB567
Csa4G130630	CsGy4G009780	Cucumber (Gy14) v2	cgybcuB165

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G130630	Wax gourd	cuwgoB369
Csa4G130630	Wax gourd	cuwgoB413
Csa4G130630	Wax gourd	cuwgoB427
Csa4G130630	Cucumber (Chinese Long) v2	cucuB027
Csa4G130630	Cucumber (Gy14) v1	cgycuB141
Csa4G130630	Cucurbita maxima (Rimu)	cmacuB262
Csa4G130630	Cucurbita moschata (Rifu)	cmocuB247
Csa4G130630	Melon (DHL92) v3.5.1	cumeB279
Csa4G130630	Melon (DHL92) v3.5.1	cumeB288
Csa4G130630	Melon (DHL92) v3.5.1	cumeB316
Csa4G130630	Watermelon (Charleston Gray)	cuwcgB298
Csa4G130630	Watermelon (97103) v1	cuwmB337
Csa4G130630	Watermelon (97103) v1	cuwmB357
Csa4G130630	Cucurbita pepo (Zucchini)	cpecuB617
Csa4G130630	Bottle gourd (USVL1VR-Ls)	culsiB272
Csa4G130630	Bottle gourd (USVL1VR-Ls)	culsiB302
Csa4G130630	Bottle gourd (USVL1VR-Ls)	culsiB313
Csa4G130630	Cucumber (Gy14) v2	cgybcuB029
Csa4G130630	Melon (DHL92) v3.6.1	cumedB264
Csa4G130630	Melon (DHL92) v3.6.1	cumedB273
Csa4G130630	Melon (DHL92) v3.6.1	cumedB300
Csa4G130630	Watermelon (97103) v2	cuwmbB295
Csa4G130630	Watermelon (97103) v2	cuwmbB314