Cla010435 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010435
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Nitrate-induced NOI protein (AHRD V1 **-- O22632_MAIZE); contains Interpro domain(s) IPR008700 Defence response, Rin4
Location	Chr2 : 10285536 .. 10287009 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTAAGAAATCCACTCACACCCTTCATTTCTTTCATCCCTAATCTCTCTTAACTTCCCCTAGATTTTGATTTCACCACTTGTTCGTTTCTGGGTTTCACTTCTTTTTTTGATTTATTTCCTTATCCATGTCTTTTTCCTTTGAATATTCGTCTTCCTGTCAAATGGGTGTTGAAAAATTTGAGGGTTTTATGCTGGGTGTGGTTTCTCTTTGCCCTTTTTGCTTGTATCTCAAAGGAGTGAAATGAATCCGGTTGTGTTCTGTATCTGTATTTGGTACTATGCTTGATTGCTTTTTGCCCTTTGTGTCTGTTTATGAATGAGTTGGTTACTAGCTTTTAGCCCTTTCTGCATAGTTTTGTTAGTTTGTTAATTTTGATGATGGATTGGTGGGGTTTCTTCCTATTTGTTTGGTTTTGAAGTTTCTTCCATTGGGGAAATTTGGGCTTTTCACTCAATCAGCTTTTCTTAAACGTTTGAAGTATGCTGAAGAAAAAGTTGGAGAGTTTCTTTTGGCATTCTATGACAAATATATGTAAATTATATCTAACTTGAGAGCTTCATCCAAACAAACAGACAAACTAGATAGCCCAACATATATATAATGATTCGGTGTTAAAGATGAGCTCTGGAAGTTTTTTCTGTTTACTATGGTCTGCCAAATGTCCTACAACTAGTTGTTAGTCTCGGTTAAGACTTAAGGATGACCAAGAAACTTGGTAAAATCTCATGTATGGTTGATTCTATGGAGTGCGTTGCATTAAGGTTGGTGAGATTTCTCTATGAATGTTAAATCTAACTCCGCTTACTGAAGGCAGCTTTCATTTTCTCCCCTGTTTTTACTATTCTCTGCATAAGTTTTTAGAGATGTTTCTGATATTCGATTGGGTAGTTCTGGATTGTTTCGAGATTATCTTAACTTCTTCTTTTTCTGTTGGTATTTTTTGAGCATTAACCTCTTTTCATTTAATGAAAAGTTTTGTTTCGGGTTAAAAAAAGAAAACAAAAAAACTATGGTCTTACATGGGTAAGGTTATAGAGATTTGACCCAAGAAGAAGGGAGAAGTGATCAGAGAGTCTCCACCTTCATATCTTTGTTACTTATTTTACTGTTATTGCTCAGACTTTTGCTTCCCTTGTGCCCCAATCTTTGAACACCTAACTTAATGAGCTACAACTAAGTGTACGTTTATACTATATTGCCATGAAATGACTGCCATCCTTGAGTTTATTGATTCTGCAGGAAAAAGGCAGTAGCAGTCCATTACCAAAGTTCGGCGAATGGGATGTCAATGACCCAGCATCCGCCGAGGGATTCACGGTAATCTTTAATAAAGCCAGGAATGAGAAAAAGACTGGTGGCATGCCTGACTCTCCAGCAAAGGATGATCCCACATACAAGAATGGTTCTGTTCTTGGAAAGTCTCAACCTGTAAGTTCTCTGCAGCCAAATACTTCGAATTTCAACTAG

mRNA sequence

ATGGCGGAAAAAGGCAGTAGCAGTCCATTACCAAAGTTCGGCGAATGGGATGTCAATGACCCAGCATCCGCCGAGGGATTCACGGTAATCTTTAATAAAGCCAGGAATGAGAAAAAGACTGGTGGCATGCCTGACTCTCCAGCAAAGGATGATCCCACATACAAGAATGGTTCTGTTCTTGGAAAGTCTCAACCTGTAAGTTCTCTGCAGCCAAATACTTCGAATTTCAACTAG

Coding sequence (CDS)

ATGGCGGAAAAAGGCAGTAGCAGTCCATTACCAAAGTTCGGCGAATGGGATGTCAATGACCCAGCATCCGCCGAGGGATTCACGGTAATCTTTAATAAAGCCAGGAATGAGAAAAAGACTGGTGGCATGCCTGACTCTCCAGCAAAGGATGATCCCACATACAAGAATGGTTCTGTTCTTGGAAAGTCTCAACCTGTAAGTTCTCTGCAGCCAAATACTTCGAATTTCAACTAG

Protein sequence

MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPVSSLQPNTSNFN

Homology

[Close]

BLAST of Cla010435 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.9e-06
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 10  LPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKN 57
           +PKFG+WD N+P+SA+G+T IFNK R E+ +G      ++  PT+++
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSR-TPTHQS 193

[Close]

BLAST of Cla010435 vs. TrEMBL
Match: A0A0A0KCQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113510 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.4e-28
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKD+  +KNGSVL
Sbjct: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVL 60

Query: 61 GKSQP 66
          GKSQP
Sbjct: 61 GKSQP 65

[Close]

BLAST of Cla010435 vs. TrEMBL
Match: A0A067E6W9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040492mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-22
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MAEKG   PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG PDSP KDD  +K+G+VL
Sbjct: 1  MAEKGG--PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVL 60

Query: 61 GKSQ 65
          GK Q
Sbjct: 61 GKPQ 62

[Close]

BLAST of Cla010435 vs. TrEMBL
Match: V4UFJ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018013mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-22
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MAEKG   PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG PDSP KDD  +K+G+VL
Sbjct: 1  MAEKGG--PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVL 60

Query: 61 GKSQ 65
          GK Q
Sbjct: 61 GKPQ 62

[Close]

BLAST of Cla010435 vs. TrEMBL
Match: A0A061DL47_THECC (RPM1-interacting protein 4 (RIN4) family protein isoform 2 OS=Theobroma cacao GN=TCM_002427 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-21
Identity = 53/69 (76.81%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MA+KG   PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG  DSP + DPTYK G+VL
Sbjct: 1  MADKGR--PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKVDSPGRKDPTYKQGAVL 60

Query: 61 GKSQPVSSL 70
          GK Q +  L
Sbjct: 61 GKPQSICKL 67

[Close]

BLAST of Cla010435 vs. TrEMBL
Match: M1BGN7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402017380 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-20
Identity = 53/67 (79.10%), Postives = 55/67 (82.09%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MAEKG   PLPKFGEWDVNDP+SAEGFTVIFNKARNEKKTGG  DSP K D  YKN S+L
Sbjct: 1  MAEKGQ--PLPKFGEWDVNDPSSAEGFTVIFNKARNEKKTGGKVDSPPKGDSAYKNKSML 60

Query: 61 GKSQPVS 68
          GK Q VS
Sbjct: 61 GKPQSVS 65

[Close]

BLAST of Cla010435 vs. NCBI nr
Match: gi|659128325|ref|XP_008464154.1| (PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKD+  +KNGSVL
Sbjct: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVL 60

Query: 61 GKSQP 66
          GKSQP
Sbjct: 61 GKSQP 65

[Close]

BLAST of Cla010435 vs. NCBI nr
Match: gi|659128323|ref|XP_008464153.1| (PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-26
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 3  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGK 62
          EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKD+  +KNGSVLGK
Sbjct: 4  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVLGK 63

Query: 63 SQP 66
          SQP
Sbjct: 64 SQP 66

[Close]

BLAST of Cla010435 vs. NCBI nr
Match: gi|567911015|ref|XP_006447821.1| (hypothetical protein CICLE_v10018013mg [Citrus clementina])

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-21
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MAEKG   PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG PDSP KDD  +K+G+VL
Sbjct: 1  MAEKGG--PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVL 60

Query: 61 GKSQ 65
          GK Q
Sbjct: 61 GKPQ 62

[Close]

BLAST of Cla010435 vs. NCBI nr
Match: gi|590712435|ref|XP_007049382.1| (RPM1-interacting protein 4 (RIN4) family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-21
Identity = 53/69 (76.81%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MA+KG   PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG  DSP + DPTYK G+VL
Sbjct: 1  MADKGR--PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKVDSPGRKDPTYKQGAVL 60

Query: 61 GKSQPVSSL 70
          GK Q +  L
Sbjct: 61 GKPQSICKL 67

[Close]

BLAST of Cla010435 vs. NCBI nr
Match: gi|747076662|ref|XP_011085411.1| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Sesamum indicum])

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-21
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MAEKG   PLPKFGEWDVNDPASAEGFTVIFNKARNEK+TGG  DSP KD+PTYK+GS+L
Sbjct: 1  MAEKGL--PLPKFGEWDVNDPASAEGFTVIFNKARNEKRTGGKSDSPPKDEPTYKHGSIL 60

Query: 61 GK 63
          GK
Sbjct: 61 GK 60

The following BLAST results are available for this feature:

BLAST of Cla010435 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIN4_ARATH	9.9e-06	44.68	RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1	[more]

BLAST of Cla010435 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCQ1_CUCSA	8.4e-28	93.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113510 PE=4 SV=1	[more]
A0A067E6W9_CITSI	9.0e-22	82.81	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040492mg PE=4 SV=1	[more]
V4UFJ1_9ROSI	9.0e-22	82.81	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018013mg PE=4 SV=1	[more]
A0A061DL47_THECC	1.2e-21	76.81	RPM1-interacting protein 4 (RIN4) family protein isoform 2 OS=Theobroma cacao GN...	[more]
M1BGN7_SOLTU	1.7e-20	79.10	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402017380 PE=4 SV=1	[more]

BLAST of Cla010435 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128325\|ref\|XP_008464154.1\|	1.2e-27	93.85	PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo]	[more]
gi\|659128323\|ref\|XP_008464153.1\|	1.3e-26	93.65	PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo]	[more]
gi\|567911015\|ref\|XP_006447821.1\|	1.3e-21	82.81	hypothetical protein CICLE_v10018013mg [Citrus clementina]	[more]
gi\|590712435\|ref\|XP_007049382.1\|	1.7e-21	76.81	RPM1-interacting protein 4 (RIN4) family protein isoform 2 [Theobroma cacao]	[more]
gi\|747076662\|ref\|XP_011085411.1\|	2.2e-21	83.87	PREDICTED: RPM1-interacting protein 4 isoform X1 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU11266	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU17522	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU37544	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010435	Cla010435.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU17522	WMU17522	transcribed_cluster
WMU37544	WMU37544	transcribed_cluster
WMU11266	WMU11266	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 7..40 score: 2.4
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 1..66 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010435	Cla97C02G035550	Watermelon (97103) v2	wmwmbB325
Cla010435	ClCG02G009120	Watermelon (Charleston Gray)	wcgwmB207

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010435	Cucumber (Gy14) v1	cgywmB263
Cla010435	Cucurbita maxima (Rimu)	cmawmB502
Cla010435	Cucurbita moschata (Rifu)	cmowmB495
Cla010435	Melon (DHL92) v3.5.1	mewmB246
Cla010435	Watermelon (Charleston Gray)	wcgwmB211
Cla010435	Cucumber (Chinese Long) v2	cuwmB597
Cla010435	Cucurbita pepo (Zucchini)	cpewmB267
Cla010435	Bottle gourd (USVL1VR-Ls)	lsiwmB102
Cla010435	Cucumber (Gy14) v2	cgybwmB559
Cla010435	Melon (DHL92) v3.6.1	medwmB240
Cla010435	Cucumber (Chinese Long) v3	cucwmB629
Cla010435	Watermelon (97103) v2	wmwmbB329
Cla010435	Wax gourd	wgowmB284