WMU17522 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU17522
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	RPM1-interacting protein 4 family protein
Location	Chr2 : 10285289 .. 10287639 (+)
Sequence length	763

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGGTGGGGCGGCTTGGGCTATGCACAGCTGGAAGTAGCAGACACCGTTAAACGTACCTTCCGAAGCTGCGTAGACGAAGGGCCCACCTCCACTTCTGTAACATCCCATTAGCCCACTCCCTCTTCTCTTGGTCCCACTCCCACACCATCTTCTTCCTTCTCTCTGAATCAATCAATCATACACCGGCTTTACCTTCATCAACATCATCATCATCATCATCATCATCATCATCATATTCTTCTTCTCAAACCTCACTCATGGCGGAAAAAGGCAGTAGCAGTCCATTACCAAAGTTCGGCGAATGGGATGTCAATGACCCCAGCATCCGCCGAGGGATTCACGGTAATCTTTAATAAAGCCAGGAATGAGAAAAAGACTGGTGGCATGCCTGACTCTCCAGCAAAGGATGATCCCACATACAAGAATGGTTCTGTTCTTGGAAAGTCTCAACCTAAAAATGGTTTTGCTGCTTGCAAGCCTGCAGAATCGTGAAGCTTTCTCGGTTCGATAAATGGGGTTCAGCAGAAATGTATAATCTGCAAATTCTCAACAACACGAGTGAAGCTGTATTTAGAACATGTGATGGATATTGCTGGACTCCATTTGTTAGAACTTTTGTCAATAATTTGGGGGTTTGGGTTTGGGGGAGTGAAGATGATTAATACATCATTGTCTTGTTATGTTGTTCCTTCTGCATAAATGGCAATTGTTGGAGATTGTTGTTCATCATCATCCCTCCTCCCCCTCTCTCTAGTTGTGAAAT

Library


Library category	ESTs
watermelon fruit 18d library	8
watermelon fruit 26d library	6
watermelon fruit 34d library	7

Homology

[Close]

BLAST of WMU17522 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-11
Identity = 37/57 (64.91%), Postives = 38/57 (66.67%), Query Frame = 1


Query: 319 PASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTY-KNGSVLGKSQPKNGFAACKPAE 378
           P+SAEGFTVIFNKARNEKK GG  DSP KD+P Y KNG VL K  P   +  C  AE
Sbjct: 19  PSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGEVLEK--PAKKWFCCIRAE 73

Query: 379  438
           
Sbjct: 79   73

Query: 439  487
           
Sbjct: 139  73

HSP 2 Score: 41.2 bits (95), Expect = 1.1e-03
Identity = 19/26 (73.08%), Postives = 18/26 (69.23%), Query Frame = 3


Query: 258 MAEKGSSSPLPKFGEWDVNDPSIRRG 317
           MA+KG   PLPKFGEWDVNDPS   G
Sbjct: 1   MADKGR--PLPKFGEWDVNDPSSAEG 24

Query: 318  336
           
Sbjct: 61   24

[Close]

BLAST of WMU17522 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-08
Identity = 31/59 (52.54%), Postives = 32/59 (54.24%), Query Frame = 1


Query: 319 PASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTY--KNGSVLGKSQPKNGFAACKPAES 378
           PASAEGFTVIFNKAR+EKKTGG P SP K    +    G    K QP    A    + S
Sbjct: 35  PASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSKPQPVKKMALLHASSS 93

Query: 379  438
           
Sbjct: 95   93

Query: 439  490
           
Sbjct: 155  93

HSP 2 Score: 37.0 bits (84), Expect = 2.1e-02
Identity = 14/18 (77.78%), Postives = 13/18 (72.22%), Query Frame = 3


Query: 282 PLPKFGEWDVNDPSIRRG 336
           PLPKFGEWDVNDP+   G
Sbjct: 23  PLPKFGEWDVNDPASAEG 40

[Close]

BLAST of WMU17522 vs. TrEMBL
Match: A0A0A0KCQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113510 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.8e-17
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 1


Query: 319 PASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPKNGFAACKPAES 378
           PASAEGFTVIFNKARNEKKTGGMPDSPAKD+  +KNGSVLGKSQPK  F   + AES
Sbjct: 21  PASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVLGKSQPKKWFCCLQAAES 77

Query: 379  438
           
Sbjct: 81   77

Query: 439  490
           
Sbjct: 141  77

[Close]

BLAST of WMU17522 vs. TrEMBL
Match: A0A0A0KCQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113510 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-05
Identity = 33/74 (44.59%), Postives = 40/74 (54.05%), Query Frame = 3


Query: 258 MAEKGSSSPLPKFGEWDVNDPSIRRGIHGNL**SQE*EKDWWHA*LSSKG*SHIQEWFCS 317
           MAEKGSSSPLPKFGEWDVNDP+   G       ++  +K        +K  +  +     
Sbjct: 1   MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVL 60

Query: 318 WKVST*KWFCCLQA 377
            K    KWFCCLQA
Sbjct: 61  GKSQPKKWFCCLQA 74

Query: 378  437
           
Sbjct: 121  74

Query: 438  480
           
Sbjct: 181  74

HSP 2 Score: 82.4 bits (202), Expect = 8.6e-13
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 319 PASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPKNGFAACKPAES 378
           PASAEGFTVIFNKARNEKKTGG PDSP KDD  +K+G+VLGK Q K  F   + A +
Sbjct: 19  PASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSKKWFCCMQAARA 75

Query: 379  438
           
Sbjct: 79   75

Query: 439  490
           
Sbjct: 139  75

[Close]

BLAST of WMU17522 vs. TrEMBL
Match: A0A067E6W9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040492mg PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.8e-03
Identity = 31/76 (40.79%), Postives = 38/76 (50.00%), Query Frame = 3


Query: 258 MAEKGSSSPLPKFGEWDVNDPSIRRGIHGNL**SQE*EKDWWHA*LSSKG*SHIQEWFCS 317
           MAEKG   PLPKFGEWDVNDP+   G       ++  +K         K  S  +     
Sbjct: 1   MAEKGG--PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVL 60

Query: 318 WKVST*KWFCCLQACR 377
            K  + KWFCC+QA R
Sbjct: 61  GKPQSKKWFCCMQAAR 74

Query: 378  437
           
Sbjct: 121  74

Query: 438  486
           
Sbjct: 181  74

HSP 2 Score: 82.4 bits (202), Expect = 8.6e-13
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 319 PASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPKNGFAACKPAES 378
           PASAEGFTVIFNKARNEKKTGG PDSP KDD  +K+G+VLGK Q K  F   + A +
Sbjct: 19  PASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSKKWFCCMQAARA 75

Query: 379  438
           
Sbjct: 79   75

Query: 439  490
           
Sbjct: 139  75

[Close]

BLAST of WMU17522 vs. TrEMBL
Match: V4UFJ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018013mg PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.8e-03
Identity = 31/76 (40.79%), Postives = 38/76 (50.00%), Query Frame = 3


Query: 258 MAEKGSSSPLPKFGEWDVNDPSIRRGIHGNL**SQE*EKDWWHA*LSSKG*SHIQEWFCS 317
           MAEKG   PLPKFGEWDVNDP+   G       ++  +K         K  S  +     
Sbjct: 1   MAEKGG--PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVL 60

Query: 318 WKVST*KWFCCLQACR 377
            K  + KWFCC+QA R
Sbjct: 61  GKPQSKKWFCCMQAAR 74

Query: 378  437
           
Sbjct: 121  74

Query: 438  486
           
Sbjct: 181  74

HSP 2 Score: 77.0 bits (188), Expect = 3.6e-11
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 1


Query: 319 PASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQ 378
           PASAEGFTVIFNKARNEKKTGG  DSP + DPTYK G+VLGK Q
Sbjct: 19  PASAEGFTVIFNKARNEKKTGGKVDSPGRKDPTYKQGAVLGKPQ 62

Query: 379  438
           
Sbjct: 79   62

Query: 439  451
           
Sbjct: 139  62

[Close]

BLAST of WMU17522 vs. TrEMBL
Match: A0A061DL47_THECC (RPM1-interacting protein 4 (RIN4) family protein isoform 2 OS=Theobroma cacao GN=TCM_002427 PE=4 SV=1)

HSP 1 Score: 40.0 bits (92), Expect = 4.9e+00
Identity = 18/26 (69.23%), Postives = 20/26 (76.92%), Query Frame = 3


Query: 258 MAEKGSSSPLPKFGEWDVNDPSIRRG 317
           MA+KG   PLPKFGEWDVNDP+   G
Sbjct: 1   MADKGR--PLPKFGEWDVNDPASAEG 24

Query: 318  336
           
Sbjct: 61   24

HSP 2 Score: 76.3 bits (186), Expect = 6.2e-11
Identity = 39/51 (76.47%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 319 PASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNG--SVLGKSQPKNGF 378
           PASAEGFTVIFNKARNEKKTGG PDSPAKD  TYK G  + LGK Q K  F
Sbjct: 19  PASAEGFTVIFNKARNEKKTGGKPDSPAKDSSTYKPGATTTLGKPQTKKWF 69

Query: 379  438
           
Sbjct: 79   69

Query: 439  466
           
Sbjct: 139  69

[Close]

BLAST of WMU17522 vs. NCBI nr
Match: gi|659128325|ref|XP_008464154.1| (PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 1


Query: 319 PASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPKNGFAACKPAES 378
           PASAEGFTVIFNKARNEKKTGGMPDSPAKD+  +KNGSVLGKSQPK  F   + AES
Sbjct: 21  PASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVLGKSQPKKWFCCLQAAES 77

Query: 379  438
           
Sbjct: 81   77

Query: 439  490
           
Sbjct: 141  77

[Close]

BLAST of WMU17522 vs. NCBI nr
Match: gi|659128323|ref|XP_008464153.1| (PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 1


Query: 319 PASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPKNGFAACKPAES 378
           PASAEGFTVIFNKARNEKKTGGMPDSPAKD+  +KNGSVLGKSQPK  F   + AES
Sbjct: 22  PASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVLGKSQPKKWFCCLQAAES 78

Query: 379  438
           
Sbjct: 82   78

Query: 439  490
           
Sbjct: 142  78

[Close]

BLAST of WMU17522 vs. NCBI nr
Match: gi|567911015|ref|XP_006447821.1| (hypothetical protein CICLE_v10018013mg [Citrus clementina])

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-12
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 319 PASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPKNGFAACKPAES 378
           PASAEGFTVIFNKARNEKKTGG PDSP KDD  +K+G+VLGK Q K  F   + A +
Sbjct: 19  PASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSKKWFCCMQAARA 75

Query: 379  438
           
Sbjct: 79   75

Query: 439  490
           
Sbjct: 139  75

[Close]

BLAST of WMU17522 vs. NCBI nr
Match: gi|747076664|ref|XP_011085412.1| (PREDICTED: RPM1-interacting protein 4 isoform X2 [Sesamum indicum])

HSP 1 Score: 80.9 bits (198), Expect = 3.6e-12
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 319 PASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPKNGFAACKPAES 378
           PASAEGFTVIFNKARNEK+TGG  DSP KD+PTYK+GS+LGK   K  F   + A +
Sbjct: 19  PASAEGFTVIFNKARNEKRTGGKSDSPPKDEPTYKHGSILGKPHSKKWFCCMQSASA 75

Query: 379  438
           
Sbjct: 79   75

Query: 439  490
           
Sbjct: 139  75

[Close]

BLAST of WMU17522 vs. NCBI nr
Match: gi|747076662|ref|XP_011085411.1| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Sesamum indicum])

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-11
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 319 PASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPKNGFAACKPAES 378
           PASAEGFTVIFNKARNEK+TGG  DSP KD+PTYK+GS+LGK   +  +  C  + S
Sbjct: 19  PASAEGFTVIFNKARNEKRTGGKSDSPPKDEPTYKHGSILGKPHSQKKWFCCMQSAS 75

Query: 379  438
           
Sbjct: 79   75

Query: 439  490
           
Sbjct: 139  75

The following BLAST results are available for this feature:

BLAST of WMU17522 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04410.1	1.9e-11	64.91	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	5.7e-08	52.54	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of WMU17522 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCQ1_CUCSA	5.8e-17	80.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113510 PE=4 SV=1	[more]
A0A0A0KCQ1_CUCSA	3.0e-05	44.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113510 PE=4 SV=1	[more]
A0A067E6W9_CITSI	2.8e-03	40.79	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040492mg PE=4 SV=1	[more]
V4UFJ1_9ROSI	2.8e-03	40.79	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018013mg PE=4 SV=1	[more]
A0A061DL47_THECC	4.9e+00	69.23	RPM1-interacting protein 4 (RIN4) family protein isoform 2 OS=Theobroma cacao GN...	[more]

BLAST of WMU17522 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128325\|ref\|XP_008464154.1\|	1.8e-16	80.70	PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo]	[more]
gi\|659128323\|ref\|XP_008464153.1\|	1.8e-16	80.70	PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo]	[more]
gi\|567911015\|ref\|XP_006447821.1\|	2.8e-12	68.42	hypothetical protein CICLE_v10018013mg [Citrus clementina]	[more]
gi\|747076664\|ref\|XP_011085412.1\|	3.6e-12	66.67	PREDICTED: RPM1-interacting protein 4 isoform X2 [Sesamum indicum]	[more]
gi\|747076662\|ref\|XP_011085411.1\|	1.0e-11	64.91	PREDICTED: RPM1-interacting protein 4 isoform X1 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla010435	Cla010435	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0106083	S2_0106083	EST
S2_0116589	S2_0116589	EST
S2_0118270	S2_0118270	EST
S2_0143427	S2_0143427	EST
S2_0145077	S2_0145077	EST
S2_0165435	S2_0165435	EST
S2_0168498	S2_0168498	EST
S2_0183788	S2_0183788	EST
S3_0005862	S3_0005862	EST
S3_0011443	S3_0011443	EST
S3_0032675	S3_0032675	EST
S3_0093398	S3_0093398	EST
S3_0158555	S3_0158555	EST
S3_0164988	S3_0164988	EST
S4_0019703	S4_0019703	EST
S4_0024174	S4_0024174	EST
S4_0075752	S4_0075752	EST
S4_0077010	S4_0077010	EST
S4_0086909	S4_0086909	EST
S4_0107152	S4_0107152	EST
S4_0119092	S4_0119092	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 7..40 score: 6.9
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 1..66 score: 1.1