Cla010435.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010435
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Nitrate-induced NOI protein (AHRD V1 **-- O22632_MAIZE); contains Interpro domain(s) IPR008700 Defence response, Rin4
Location	Chr2 : 10285536 .. 10287009 (+)
Sequence length	234

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTAAGAAATCCACTCACACCCTTCATTTCTTTCATCCCTAATCTCTCTTAACTTCCCCTAGATTTTGATTTCACCACTTGTTCGTTTCTGGGTTTCACTTCTTTTTTTGATTTATTTCCTTATCCATGTCTTTTTCCTTTGAATATTCGTCTTCCTGTCAAATGGGTGTTGAAAAATTTGAGGGTTTTATGCTGGGTGTGGTTTCTCTTTGCCCTTTTTGCTTGTATCTCAAAGGAGTGAAATGAATCCGGTTGTGTTCTGTATCTGTATTTGGTACTATGCTTGATTGCTTTTTGCCCTTTGTGTCTGTTTATGAATGAGTTGGTTACTAGCTTTTAGCCCTTTCTGCATAGTTTTGTTAGTTTGTTAATTTTGATGATGGATTGGTGGGGTTTCTTCCTATTTGTTTGGTTTTGAAGTTTCTTCCATTGGGGAAATTTGGGCTTTTCACTCAATCAGCTTTTCTTAAACGTTTGAAGTATGCTGAAGAAAAAGTTGGAGAGTTTCTTTTGGCATTCTATGACAAATATATGTAAATTATATCTAACTTGAGAGCTTCATCCAAACAAACAGACAAACTAGATAGCCCAACATATATATAATGATTCGGTGTTAAAGATGAGCTCTGGAAGTTTTTTCTGTTTACTATGGTCTGCCAAATGTCCTACAACTAGTTGTTAGTCTCGGTTAAGACTTAAGGATGACCAAGAAACTTGGTAAAATCTCATGTATGGTTGATTCTATGGAGTGCGTTGCATTAAGGTTGGTGAGATTTCTCTATGAATGTTAAATCTAACTCCGCTTACTGAAGGCAGCTTTCATTTTCTCCCCTGTTTTTACTATTCTCTGCATAAGTTTTTAGAGATGTTTCTGATATTCGATTGGGTAGTTCTGGATTGTTTCGAGATTATCTTAACTTCTTCTTTTTCTGTTGGTATTTTTTGAGCATTAACCTCTTTTCATTTAATGAAAAGTTTTGTTTCGGGTTAAAAAAAGAAAACAAAAAAACTATGGTCTTACATGGGTAAGGTTATAGAGATTTGACCCAAGAAGAAGGGAGAAGTGATCAGAGAGTCTCCACCTTCATATCTTTGTTACTTATTTTACTGTTATTGCTCAGACTTTTGCTTCCCTTGTGCCCCAATCTTTGAACACCTAACTTAATGAGCTACAACTAAGTGTACGTTTATACTATATTGCCATGAAATGACTGCCATCCTTGAGTTTATTGATTCTGCAGGAAAAAGGCAGTAGCAGTCCATTACCAAAGTTCGGCGAATGGGATGTCAATGACCCAGCATCCGCCGAGGGATTCACGGTAATCTTTAATAAAGCCAGGAATGAGAAAAAGACTGGTGGCATGCCTGACTCTCCAGCAAAGGATGATCCCACATACAAGAATGGTTCTGTTCTTGGAAAGTCTCAACCTGTAAGTTCTCTGCAGCCAAATACTTCGAATTTCAACTAG

mRNA sequence

ATGGCGGAAAAAGGCAGTAGCAGTCCATTACCAAAGTTCGGCGAATGGGATGTCAATGACCCAGCATCCGCCGAGGGATTCACGGTAATCTTTAATAAAGCCAGGAATGAGAAAAAGACTGGTGGCATGCCTGACTCTCCAGCAAAGGATGATCCCACATACAAGAATGGTTCTGTTCTTGGAAAGTCTCAACCTGTAAGTTCTCTGCAGCCAAATACTTCGAATTTCAACTAG

Coding sequence (CDS)

ATGGCGGAAAAAGGCAGTAGCAGTCCATTACCAAAGTTCGGCGAATGGGATGTCAATGACCCAGCATCCGCCGAGGGATTCACGGTAATCTTTAATAAAGCCAGGAATGAGAAAAAGACTGGTGGCATGCCTGACTCTCCAGCAAAGGATGATCCCACATACAAGAATGGTTCTGTTCTTGGAAAGTCTCAACCTGTAAGTTCTCTGCAGCCAAATACTTCGAATTTCAACTAG

Protein sequence

MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPVSSLQPNTSNFN

Homology

[Close]

BLAST of Cla010435 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.9e-06
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 10  LPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKN 57
           +PKFG+WD N+P+SA+G+T IFNK R E+ +G      ++  PT+++
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSR-TPTHQS 193

[Close]

BLAST of Cla010435 vs. TrEMBL
Match: A0A0A0KCQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113510 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.4e-28
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKD+  +KNGSVL
Sbjct: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVL 60

Query: 61 GKSQP 66
          GKSQP
Sbjct: 61 GKSQP 65

[Close]

BLAST of Cla010435 vs. TrEMBL
Match: A0A067E6W9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040492mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-22
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MAEKG   PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG PDSP KDD  +K+G+VL
Sbjct: 1  MAEKGG--PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVL 60

Query: 61 GKSQ 65
          GK Q
Sbjct: 61 GKPQ 62

[Close]

BLAST of Cla010435 vs. TrEMBL
Match: V4UFJ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018013mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-22
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MAEKG   PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG PDSP KDD  +K+G+VL
Sbjct: 1  MAEKGG--PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVL 60

Query: 61 GKSQ 65
          GK Q
Sbjct: 61 GKPQ 62

[Close]

BLAST of Cla010435 vs. TrEMBL
Match: A0A061DL47_THECC (RPM1-interacting protein 4 (RIN4) family protein isoform 2 OS=Theobroma cacao GN=TCM_002427 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-21
Identity = 53/69 (76.81%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MA+KG   PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG  DSP + DPTYK G+VL
Sbjct: 1  MADKGR--PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKVDSPGRKDPTYKQGAVL 60

Query: 61 GKSQPVSSL 70
          GK Q +  L
Sbjct: 61 GKPQSICKL 67

[Close]

BLAST of Cla010435 vs. TrEMBL
Match: M1BGN7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402017380 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-20
Identity = 53/67 (79.10%), Postives = 55/67 (82.09%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MAEKG   PLPKFGEWDVNDP+SAEGFTVIFNKARNEKKTGG  DSP K D  YKN S+L
Sbjct: 1  MAEKGQ--PLPKFGEWDVNDPSSAEGFTVIFNKARNEKKTGGKVDSPPKGDSAYKNKSML 60

Query: 61 GKSQPVS 68
          GK Q VS
Sbjct: 61 GKPQSVS 65

[Close]

BLAST of Cla010435 vs. NCBI nr
Match: gi|659128325|ref|XP_008464154.1| (PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKD+  +KNGSVL
Sbjct: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVL 60

Query: 61 GKSQP 66
          GKSQP
Sbjct: 61 GKSQP 65

[Close]

BLAST of Cla010435 vs. NCBI nr
Match: gi|659128323|ref|XP_008464153.1| (PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-26
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 3  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGK 62
          EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKD+  +KNGSVLGK
Sbjct: 4  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVLGK 63

Query: 63 SQP 66
          SQP
Sbjct: 64 SQP 66

[Close]

BLAST of Cla010435 vs. NCBI nr
Match: gi|567911015|ref|XP_006447821.1| (hypothetical protein CICLE_v10018013mg [Citrus clementina])

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-21
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MAEKG   PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG PDSP KDD  +K+G+VL
Sbjct: 1  MAEKGG--PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVL 60

Query: 61 GKSQ 65
          GK Q
Sbjct: 61 GKPQ 62

[Close]

BLAST of Cla010435 vs. NCBI nr
Match: gi|590712435|ref|XP_007049382.1| (RPM1-interacting protein 4 (RIN4) family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-21
Identity = 53/69 (76.81%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MA+KG   PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG  DSP + DPTYK G+VL
Sbjct: 1  MADKGR--PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKVDSPGRKDPTYKQGAVL 60

Query: 61 GKSQPVSSL 70
          GK Q +  L
Sbjct: 61 GKPQSICKL 67

[Close]

BLAST of Cla010435 vs. NCBI nr
Match: gi|747076662|ref|XP_011085411.1| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Sesamum indicum])

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-21
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 1


Query: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVL 60
          MAEKG   PLPKFGEWDVNDPASAEGFTVIFNKARNEK+TGG  DSP KD+PTYK+GS+L
Sbjct: 1  MAEKGL--PLPKFGEWDVNDPASAEGFTVIFNKARNEKRTGGKSDSPPKDEPTYKHGSIL 60

Query: 61 GK 63
          GK
Sbjct: 61 GK 60

The following BLAST results are available for this feature:

BLAST of Cla010435 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIN4_ARATH	9.9e-06	44.68	RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1	[more]

BLAST of Cla010435 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCQ1_CUCSA	8.4e-28	93.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113510 PE=4 SV=1	[more]
A0A067E6W9_CITSI	9.0e-22	82.81	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040492mg PE=4 SV=1	[more]
V4UFJ1_9ROSI	9.0e-22	82.81	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018013mg PE=4 SV=1	[more]
A0A061DL47_THECC	1.2e-21	76.81	RPM1-interacting protein 4 (RIN4) family protein isoform 2 OS=Theobroma cacao GN...	[more]
M1BGN7_SOLTU	1.7e-20	79.10	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402017380 PE=4 SV=1	[more]

BLAST of Cla010435 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128325\|ref\|XP_008464154.1\|	1.2e-27	93.85	PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo]	[more]
gi\|659128323\|ref\|XP_008464153.1\|	1.3e-26	93.65	PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo]	[more]
gi\|567911015\|ref\|XP_006447821.1\|	1.3e-21	82.81	hypothetical protein CICLE_v10018013mg [Citrus clementina]	[more]
gi\|590712435\|ref\|XP_007049382.1\|	1.7e-21	76.81	RPM1-interacting protein 4 (RIN4) family protein isoform 2 [Theobroma cacao]	[more]
gi\|747076662\|ref\|XP_011085411.1\|	2.2e-21	83.87	PREDICTED: RPM1-interacting protein 4 isoform X1 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla010435	Cla010435	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla010435	Cla010435.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla010435.1.cds1	Cla010435.1.cds1	CDS
Cla010435.1.cds2	Cla010435.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 7..40 score: 2.4
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 1..66 score: 9.7