Cla008484 (gene) Watermelon (97103) v1

NameCla008484
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTetratricopeptide repeat-containing protein (AHRD V1 *--- D7L8H9_ARALL); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical
LocationChr1 : 8737791 .. 8740830 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCAACATCAGCTTTCTCAGTCCTCTCTCAACTTGAACTTCCCGGACCTAAATCCTCAAGCTACAATGTCCGGGCATTGCCTAAATGTCGATTAAGCATTCTTCGGAAGAATTACAAACCAACCTCCCAAAGCTTGTTTTATTCAGCTGCGAAAATTTTTCATTCCCCCATTCACAATCCTCCCTTCTCAAACCTCCCTGAGTCCGATATATGTCGTTCTACCTCACCCCAGATAAAAATTTCCACATATTTCGTTGAAAGATTTGTGGGTTTTCTTGTTGGGTCATTTATCTTCATGGGTTGTTTCAATGTAAGATACGCCAGGGCATTGCCTGCTCAGACAAGCAGCAAAAACCCAACATTGGCTGAAAAAGCTCAAGCTCCAGAAGAGGATAGTGAAGAGGAGATGAGGGAGAGGATCTTGGAGCATGATCCAACTAATATTGATACTCTGAAATCTGTTTTGTATGGGAAAATGAGGAGTGGAAAGACAGAGGAGGCCATTAAGTATGTTAAGAGGTTGATTGATCTTGAGCCGGATGAGGTTGAATGGAAGCTTTTGTTGGCTCTTTGCTATGAGACATTGGGGCAGCTGGACACGGCAAAAAGATTGTTCATGGAAATTTTGGAGAAGAAACCTCTGTTGGTTAGAGCTTTGCATGTAAGATTTTTCCTTGACTGTGATAGGAAAATAGATTTATGTTTCTTTAGACTGGTAGTTTATTTTATGTCATGTGGTGTGAGTTCAAGTTGGAAATTTTAGTGTACTGGCTTAAATGAAGTTGATATCAGTATACAAAACCAATGTGATGTTTGCCTTAGAGATTTTATTGGGAAAAATTGAATACTGAACTTACCGAAGGCGGTTACTAACAAGATGAATTCTTATTATTGAAAGTGTCGTTAAGACACAAGCTTTTTAGCAAGAACTCATAGGAAATGACTTCTAGAGAACAGTTGATATGGCTTTTTTCCTGTAGTTTTATTTGAGCTTGAATTATTTCATCAAGCTCACAAAATTTTCTGAATATATTGTAGTCGTGAAGGCAATTTATATTCTTCAGTCCCATGTGTGATATTCAGGCATAGTATAAGAGAATTGCCTTCGAATCCTTTTAATCCCTCAGGGGAAGATACTGATTAATATGTTAGTATGTAATAAACACTTTAATATTGTCATCTCGTCTGTGGGCTGCCTTGCTATCTTGGAAGCTGCAACCTTTTATAGCTTTCCCCAATATCTTTAAGAAGGTATGTCAATGCTTAATTTGAAACTTTCAATTTGCACTTTCTTCAGGGTTTGGCGTTAGTGATGCATAAGAACAACGAAGGTCAATCTGTGTTTGAGATGCTCAATAAGGCTCTAGATTTTGCTTGTGATGAGAAAAAACTTACTGAGATGAGGAGCATCGGGATACTAATTGCTCAAATGCATGTTGTGAAGGTCATTTGCTATTTATATTTAGAGTTTGTTTGGATTGACTTTCTAAGTGCTTAGAAATGCTTCTTTTTTGTACTTAAAAAATCTTTTTTCAGCACTTAGAAAATCAATCTATATGGGCCTTTTTATGTTCCATGTTTGAATCTGTAACTTTTTGGTTGAGTCCATGTTTTTCTTTCTCACTATGTTCAACCTATGGGGGTTTCCTGCTTCTTAAACTGGATCCATTTACGTAGAAGGGTGCAAATGTTTGGATGACTTGTATTGGAAACTTATCTGTCTAGCTGGCTGTGGTTATATGCATTAGAATTACTCCAAAATGTTGTTAGACTAAAGTTATAAAAGGGTGGATTGTATATTGACAAGCACAAGATAAAAAATGTCATTATGTAATCCTATTTTTTGGGTCTAAGCGGTGTAATCCTCAAGGTATTCTAAAGTTTGACAAGCACAAGATAAAAAATGTCATTATGTATTCCTATTTTTTGGGTCTAGACATTGTAATCGTTGACGTGTTCTAAAGTTTATTTCTGATCGATACTGTTTCATGGGTAAAGGCGTAAAGCTAAGATTTTGCTGGCCACTGGTCAGACAGATTGCTTGAAATGCTAGAGAGAAATGACAACTTTTATGGAAATGTGGAGATGGCAATGACAATTTAGATCTGGCTTGTTATGTAGCCTCTAGATAGAGTTCTTTCTCTTGCTTTGTAAAATCAATCGTTTTTTTTCATTAATTGATTAGCAATTATTGAGCTTTTTTGCAATTATATTGAATCTTCAAGTATTGGAGAATTTCTAATTTTCCACCTTGATTCTCTGGATTCTTGCCCAACAAAGTATTTATGTCTTTCAGGGGGAACTGGAAGAGGGCTTGAAGAAGTTTCAGGATCTTGTTGATGAAAACCCAAGGGATTTTCGACCCTATCTTTGCCAGGTTCCGACATATTTGCAGACTTCCTACCTCTTTTATCATAATTTTGATTAAGCCATCTCCACACTACATGTTTAATGCCCCAGCTTACCAGGCTACTTATGTGTCACATAAATATGGAGGAAATTCTACTTTTTCTTTCTCAAGAACTCGTAAGGATGTTTTAAGACTGTTAGCATTCATTTCAACCAAAAGAAAAATCTGCACTACAGATATGGTTGTTTGCACTTGGCACATTGATTGTATGTTATAGGTTTGGTTCAACTGAATAATATGAATAGAGAATTGATGAGTGGGAACAGTAAGATAAAAATGAAAGTAGATCTCGGAAGAAGGTTCCGGCCCTTAAGATTTAGCCAAGCATCTTATAGTAAGAAAAATGTAATGACTTGGCTTATTGAAGAGGACAATTGTCTTTGGGGGCGAGGATGAAATACTGAAATGAATGATATCTAACTATATGCATTTCTTGCAGGGAATAATATACAGTCTGATGGACAAAAAAAAGGAAGCTGCAGAGCAGTTTGCGACGTATCAGGCCCTTGTACCTGATGAATTTCCTCAAAGGGAATTTATCGACGATGTCATGTTGTCAGCTACAACTGCTTCACGGGAACAGTTTCAGAAGGAATTTGATGCTGAATTTACGCACAAGAAGTAA

mRNA sequence

ATGGGTTCAACATCAGCTTTCTCAGTCCTCTCTCAACTTGAACTTCCCGGACCTAAATCCTCAAGCTACAATGTCCGGGCATTGCCTAAATGTCGATTAAGCATTCTTCGGAAGAATTACAAACCAACCTCCCAAAGCTTGTTTTATTCAGCTGCGAAAATTTTTCATTCCCCCATTCACAATCCTCCCTTCTCAAACCTCCCTGAGTCCGATATATGTCGTTCTACCTCACCCCAGATAAAAATTTCCACATATTTCGTTGAAAGATTTGTGGGTTTTCTTGTTGGGTCATTTATCTTCATGGGTTGTTTCAATGTAAGATACGCCAGGGCATTGCCTGCTCAGACAAGCAGCAAAAACCCAACATTGGCTGAAAAAGCTCAAGCTCCAGAAGAGGATAGTGAAGAGGAGATGAGGGAGAGGATCTTGGAGCATGATCCAACTAATATTGATACTCTGAAATCTGTTTTGTATGGGAAAATGAGGAGTGGAAAGACAGAGGAGGCCATTAAGTATGTTAAGAGGTTGATTGATCTTGAGCCGGATGAGGTTGAATGGAAGCTTTTGTTGGCTCTTTGCTATGAGACATTGGGGCAGCTGGACACGGCAAAAAGATTGTTCATGGAAATTTTGGAGAAGAAACCTCTGTTGGTTAGAGCTTTGCATGGTTTGGCGTTAGTGATGCATAAGAACAACGAAGGTCAATCTGTGTTTGAGATGCTCAATAAGGCTCTAGATTTTGCTTGTGATGAGAAAAAACTTACTGAGATGAGGAGCATCGGGATACTAATTGCTCAAATGCATGTTGTGAAGGGGGAACTGGAAGAGGGCTTGAAGAAGTTTCAGGATCTTGTTGATGAAAACCCAAGGGATTTTCGACCCTATCTTTGCCAGGGAATAATATACAGTCTGATGGACAAAAAAAAGGAAGCTGCAGAGCAGTTTGCGACGTATCAGGCCCTTGTACCTGATGAATTTCCTCAAAGGGAATTTATCGACGATGTCATGTTGTCAGCTACAACTGCTTCACGGGAACAGTTTCAGAAGGAATTTGATGCTGAATTTACGCACAAGAAGTAA

Coding sequence (CDS)

ATGGGTTCAACATCAGCTTTCTCAGTCCTCTCTCAACTTGAACTTCCCGGACCTAAATCCTCAAGCTACAATGTCCGGGCATTGCCTAAATGTCGATTAAGCATTCTTCGGAAGAATTACAAACCAACCTCCCAAAGCTTGTTTTATTCAGCTGCGAAAATTTTTCATTCCCCCATTCACAATCCTCCCTTCTCAAACCTCCCTGAGTCCGATATATGTCGTTCTACCTCACCCCAGATAAAAATTTCCACATATTTCGTTGAAAGATTTGTGGGTTTTCTTGTTGGGTCATTTATCTTCATGGGTTGTTTCAATGTAAGATACGCCAGGGCATTGCCTGCTCAGACAAGCAGCAAAAACCCAACATTGGCTGAAAAAGCTCAAGCTCCAGAAGAGGATAGTGAAGAGGAGATGAGGGAGAGGATCTTGGAGCATGATCCAACTAATATTGATACTCTGAAATCTGTTTTGTATGGGAAAATGAGGAGTGGAAAGACAGAGGAGGCCATTAAGTATGTTAAGAGGTTGATTGATCTTGAGCCGGATGAGGTTGAATGGAAGCTTTTGTTGGCTCTTTGCTATGAGACATTGGGGCAGCTGGACACGGCAAAAAGATTGTTCATGGAAATTTTGGAGAAGAAACCTCTGTTGGTTAGAGCTTTGCATGGTTTGGCGTTAGTGATGCATAAGAACAACGAAGGTCAATCTGTGTTTGAGATGCTCAATAAGGCTCTAGATTTTGCTTGTGATGAGAAAAAACTTACTGAGATGAGGAGCATCGGGATACTAATTGCTCAAATGCATGTTGTGAAGGGGGAACTGGAAGAGGGCTTGAAGAAGTTTCAGGATCTTGTTGATGAAAACCCAAGGGATTTTCGACCCTATCTTTGCCAGGGAATAATATACAGTCTGATGGACAAAAAAAAGGAAGCTGCAGAGCAGTTTGCGACGTATCAGGCCCTTGTACCTGATGAATTTCCTCAAAGGGAATTTATCGACGATGTCATGTTGTCAGCTACAACTGCTTCACGGGAACAGTTTCAGAAGGAATTTGATGCTGAATTTACGCACAAGAAGTAA

Protein sequence

MGSTSAFSVLSQLELPGPKSSSYNVRALPKCRLSILRKNYKPTSQSLFYSAAKIFHSPIHNPPFSNLPESDICRSTSPQIKISTYFVERFVGFLVGSFIFMGCFNVRYARALPAQTSSKNPTLAEKAQAPEEDSEEEMRERILEHDPTNIDTLKSVLYGKMRSGKTEEAIKYVKRLIDLEPDEVEWKLLLALCYETLGQLDTAKRLFMEILEKKPLLVRALHGLALVMHKNNEGQSVFEMLNKALDFACDEKKLTEMRSIGILIAQMHVVKGELEEGLKKFQDLVDENPRDFRPYLCQGIIYSLMDKKKEAAEQFATYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDAEFTHKK
BLAST of Cla008484 vs. Swiss-Prot
Match: SG1_ARATH (protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana GN=SG1 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-41
Identity = 103/295 (34.92%), Postives = 166/295 (56.27%), Query Frame = 1

Query: 44  SQSLFYSAAKIFHSPIHNPPFSNLPESDIC----RSTSPQIKISTYFVERFVGF-----L 103
           S SL  S   +  +P+  P    +P  D+     R++S Q      F E+F  F     L
Sbjct: 8   SSSLVSSFVAVKATPVTGPL---IPRRDLLSIRIRASSNQNSSGYCFPEKFKSFAKSAIL 67

Query: 104 VGSFIFM-GCFNVRYARALPAQTSSKNPTLAEKAQAPEEDSEEEMR--ERILEHDPTNID 163
           +G+ + M G F+      LP +  S   T+ +  +  +E+   E+     +L+  P  ++
Sbjct: 68  IGAAVSMTGKFST-----LPVKAESPVTTIEKTYEEVKEEKLSEITPLSELLDSTPEAVE 127

Query: 164 TLKSVLYGKMRSGKTEEAIKYVKRLIDLEPDEVEWKLLLALCYETLGQLDTAKRLFMEIL 223
           TL+S+L  K+  G+ EEA+K ++RL+  +P+E EWK L+A     +G+ + A+++F EIL
Sbjct: 128 TLRSLLQQKLEKGEDEEALKLLERLVAAQPEETEWKFLMARLLGEMGRPENARQMFEEIL 187

Query: 224 EKKPLLVRALHGLALVMHKNNEGQSVFEMLNKALDFACDEKKLTEMRSIGILIAQMHVVK 283
           ++ PL   AL   AL+M ++ EG +V + L  AL  A  E  + E R + ++IAQ+H ++
Sbjct: 188 QRNPLSFEALFENALLMDRSGEGNAVLQRLEDALAVAEAEYLVKEARDVRLIIAQIHFLQ 247

Query: 284 GELEEGLKKFQDLVDENPRDFRPYLCQGIIYSLMDKKKEAAEQFATYQALVPDEF 327
             ++E LK ++ L  E+P+DFRPY C+G+IYSL+DK  EA EQFA Y+ L P +F
Sbjct: 248 KNVDEALKSYEQLTKEDPKDFRPYFCRGMIYSLLDKNVEAKEQFAKYRELSPKKF 294

BLAST of Cla008484 vs. TrEMBL
Match: A0A0A0KHZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486920 PE=4 SV=1)

HSP 1 Score: 605.5 bits (1560), Expect = 4.1e-170
Identity = 310/362 (85.64%), Postives = 333/362 (91.99%), Query Frame = 1

Query: 1   MGSTSA--FSVLSQLELPGP-KSSSYNVRALPKCRLSILRKNYKPTSQSLFYSAAKIFHS 60
           MGSTSA  FSV SQ+ELP P K SSYNVRAL KC+ +IL+KNYK +SQSLF S AKIFHS
Sbjct: 1   MGSTSASTFSVSSQIELPRPPKFSSYNVRALSKCQYNILQKNYKLSSQSLFCSHAKIFHS 60

Query: 61  PIHNPPFSNLPESDICRSTSPQIKISTYFVERFVGFLVGSFIFMGCFNVRYARALPAQTS 120
           PIHN PFSNL ESDI R  SPQIKIS YF+E+FVGFLVGSFIFMGCFNVRY RALPAQTS
Sbjct: 61  PIHNTPFSNLSESDIRRFNSPQIKISKYFIEKFVGFLVGSFIFMGCFNVRYVRALPAQTS 120

Query: 121 SKNPTLAEKAQAPEEDSEEEMRERILEHDPTNIDTLKSVLYGKMRSGKTEEAIKYVKRLI 180
           +KNP LAEKAQ PEEDSEE M ERILEHDP+N+DTLK+VLYGKMRSGKTE A+KYVKRLI
Sbjct: 121 NKNPILAEKAQVPEEDSEEVMWERILEHDPSNVDTLKAVLYGKMRSGKTENAVKYVKRLI 180

Query: 181 DLEPDEVEWKLLLALCYETLGQLDTAKRLFMEILEKKPLLVRALHGLALVMHKNNEGQSV 240
           DLEPDEVEW++LLALCYE LG+L TAKRLFMEIL++KPLLVRALHGLALVMHKNNEG+SV
Sbjct: 181 DLEPDEVEWRILLALCYEILGELGTAKRLFMEILKQKPLLVRALHGLALVMHKNNEGESV 240

Query: 241 FEMLNKALDFACDEKKLTEMRSIGILIAQMHVVKGELEEGLKKFQDLVDENPRDFRPYLC 300
           FEMLNKALD A DEKKLTE RSIGILIAQMHVVKGELEEGLKKFQ+LV+ENPRDFRP+LC
Sbjct: 241 FEMLNKALDIARDEKKLTEHRSIGILIAQMHVVKGELEEGLKKFQNLVEENPRDFRPHLC 300

Query: 301 QGIIYSLMDKKKEAAEQFATYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDAEFTH 360
           QGIIYSL+DKKKEAAEQF TYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDAEFT+
Sbjct: 301 QGIIYSLLDKKKEAAEQFETYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDAEFTN 360

BLAST of Cla008484 vs. TrEMBL
Match: M5WBE5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007407mg PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 2.1e-105
Identity = 211/372 (56.72%), Postives = 264/372 (70.97%), Query Frame = 1

Query: 1   MGSTSAFSVLSQLELPGPKSSSYNVRALPKCRLSILRKNY--KPTSQSLFYSAAKIF--- 60
           MGS +A S+    ELP  K   + +      + S L  +Y  KP +    + + +     
Sbjct: 1   MGSLAACSLQPNTELPHTKILPHTL-CCKSIKPSFLNSHYIQKPLTLPFKFLSTRSSSNS 60

Query: 61  -------HSPIHNPPFSNLPESDICRSTSPQIKISTYFVERFVGFLVGSFIFMGCFNVRY 120
                  HS     PF  L  S    +  P   +S +F+E+ VGF++GS  F+GCFNVR 
Sbjct: 61  NLRRLSSHSTSLTLPFCKLSHS--YSAFQPNKNLSRFFIEKIVGFVIGSVFFVGCFNVRA 120

Query: 121 ARALPAQTSSKNPTLAEKAQAPEEDSE-EEMRERILEHDPTNIDTLKSVLYGKMRSGKTE 180
           A ALPAQTSS +    EK +  +  SE EEM E+ILE DPTN+  LK VLYG MR G T+
Sbjct: 121 AVALPAQTSSSSANFEEKRETQKGKSEDEEMYEKILEEDPTNVGALKVVLYGAMRRGNTK 180

Query: 181 EAIKYVKRLIDLEPDEVEWKLLLALCYETLGQLDTAKRLFMEILEKKPLLVRALHGLALV 240
           +A+ YV++LID+EPDEVEW+LL+ALCYE +GQL TAKRLF EILE++PLL+RALHGLALV
Sbjct: 181 QAVNYVEKLIDVEPDEVEWRLLMALCYEIMGQLSTAKRLFQEILEERPLLLRALHGLALV 240

Query: 241 MHKNNEGQSVFEMLNKALDFACDEKKLTEMRSIGILIAQMHVVKGELEEGLKKFQDLVDE 300
           MHKN+EG +VF MLNKAL+ A  EK++ E R+I ILIAQMHVVKGELEEGL KFQDLV  
Sbjct: 241 MHKNHEGPAVFVMLNKALEIAQREKRVIEERNIRILIAQMHVVKGELEEGLNKFQDLVKA 300

Query: 301 NPRDFRPYLCQGIIYSLMDKKKEAAEQFATYQALVPDEFPQREFIDDVMLSATTASREQF 360
           +PRDFRPYLCQGIIYSL+D+KKEAAEQF TY+AL P+EFPQR F+DDV+L+A T S +QF
Sbjct: 301 DPRDFRPYLCQGIIYSLLDQKKEAAEQFETYRALAPEEFPQRGFLDDVVLAAKTKSGKQF 360

BLAST of Cla008484 vs. TrEMBL
Match: A0A061DJY5_THECC (Tetratricopeptide repeat-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_001272 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 2.4e-101
Identity = 210/363 (57.85%), Postives = 259/363 (71.35%), Query Frame = 1

Query: 1   MGSTSAFSVLSQLELPGPKSSSYNVRALPKCRLSILRKNYKPTSQ--SLFYSAAKIFHSP 60
           M S  A+S +SQ ELP P     N R  P   L+ L  N  P  +  SL +   K++ S 
Sbjct: 1   MCSIKAYSFISQTELPFPTPKFPNHR--PCKTLNPLFTNPLPFHKPNSLPFRTTKLYISL 60

Query: 61  IHNPPFSNLPESDICRSTSPQIKISTYFVERFVGFLVGSFIFMGCFNVRYARALPAQT-- 120
                F     S      SP+ +      E+ V FLVGSFIFMGCFN R   ALPAQT  
Sbjct: 61  NPTSIFRTKTSS-----VSPKNQFFKSLSEKIVVFLVGSFIFMGCFNARPCLALPAQTTT 120

Query: 121 SSKNPTLAEKAQAPEEDSEEEMRERILEHDPTNIDTLKSVLYGKMRSGKTEEAIKYVKRL 180
           SS+     EK     +  EEE  E++LE +P N++ LK VLYGKMR GKT+EA++ V++L
Sbjct: 121 SSRANLEGEKETQKGKSEEEERYEKVLEKEPGNVEALKVVLYGKMRRGKTKEAVECVEKL 180

Query: 181 IDLEPDEVEWKLLLALCYETLGQLDTAKRLFMEILEKKPLLVRALHGLALVMHKNNEGQS 240
           ID+EP+E EW+LL ALCYE +GQL  AKRLF EILE++PLL+RALHGLA+VMHKN+EG +
Sbjct: 181 IDIEPNEFEWRLLQALCYEMMGQLSKAKRLFKEILEERPLLLRALHGLAVVMHKNHEGPA 240

Query: 241 VFEMLNKALDFACDEKKLTEMRSIGILIAQMHVVKGELEEGLKKFQDLVDENPRDFRPYL 300
           VFE LN+AL+ A  EK++TE R+I ILIAQMHVVKGELEEGLKKFQDL+++NPRDFRPYL
Sbjct: 241 VFERLNEALEVALREKRVTEERNIRILIAQMHVVKGELEEGLKKFQDLMNDNPRDFRPYL 300

Query: 301 CQGIIYSLMDKKKEAAEQFATYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDAEFT 360
           CQGIIYSL+DKKKEAAEQF  YQ+LVP+EFPQR F+DDV+L+A T S E  QKEF+AEF+
Sbjct: 301 CQGIIYSLLDKKKEAAEQFEIYQSLVPEEFPQRCFLDDVVLAAKTKSHEWLQKEFEAEFS 356

BLAST of Cla008484 vs. TrEMBL
Match: A0A0D2SJC8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G246100 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 5.9e-100
Identity = 205/362 (56.63%), Postives = 258/362 (71.27%), Query Frame = 1

Query: 1   MGSTSAFSVLSQLELPGPKSSSYNVRALPKCRLS-ILRKNYKPTSQSLFYSAAKIFHSPI 60
           M S  A S + Q E   PK  +      P   LS +   + KP + S   +  +  ++P 
Sbjct: 1   MFSIKASSFIYQTEFHTPKFPNLK----PSKTLSPLFTPSLKPNNLSFQTTRLRSSYNPT 60

Query: 61  HNPPFSNLPESDICRSTSPQIKISTYFVERFVGFLVGSFIFMGCFNVRYARALPAQ-TSS 120
                S LP    C   SP+ +      E+ V FLVGSFIF+GCFN +   ALPAQ T+S
Sbjct: 61  -----SILPTKLPC--VSPKTQFFNSLSEKVVVFLVGSFIFLGCFNAKPCLALPAQATTS 120

Query: 121 KNPTLAEKAQAPEEDSEEEMR-ERILEHDPTNIDTLKSVLYGKMRSGKTEEAIKYVKRLI 180
               L  K +  +  SEEE R E+ILE +P N+D LK +LYGK+R GKT+EA++ V++LI
Sbjct: 121 SRVNLEGKNETQKRKSEEEERYEKILEKEPRNVDALKVLLYGKIRRGKTQEAVECVEKLI 180

Query: 181 DLEPDEVEWKLLLALCYETLGQLDTAKRLFMEILEKKPLLVRALHGLALVMHKNNEGQSV 240
           D+EPDEVEW+LL ALCYE +GQL  AKRLF EILE+ PLL+RALHGLA+VMHKN+EG +V
Sbjct: 181 DIEPDEVEWRLLQALCYEMMGQLSKAKRLFKEILEETPLLLRALHGLAMVMHKNHEGPAV 240

Query: 241 FEMLNKALDFACDEKKLTEMRSIGILIAQMHVVKGELEEGLKKFQDLVDENPRDFRPYLC 300
           FEMLN+AL+ A  EK++TE R+I +LIAQMHVVKGELEEG+KKFQDL+ +NPRDFRPYLC
Sbjct: 241 FEMLNEALEVAVREKRVTEERNIRVLIAQMHVVKGELEEGMKKFQDLIKDNPRDFRPYLC 300

Query: 301 QGIIYSLMDKKKEAAEQFATYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDAEFTH 360
           QGIIYSL+DKKKEAAEQF  YQ+LVP+EFPQR F+DDV+L A T SR+  QK+F AEF++
Sbjct: 301 QGIIYSLLDKKKEAAEQFEIYQSLVPEEFPQRGFLDDVVLEAKTKSRKWLQKDFKAEFSY 351

BLAST of Cla008484 vs. TrEMBL
Match: W9QLI1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005182 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 3.8e-99
Identity = 198/360 (55.00%), Postives = 256/360 (71.11%), Query Frame = 1

Query: 1   MGSTSAFSVLSQLELPGPKSSSYNVRALPKCRLSILRKNYKPTSQSLFYSAAKIFHSPIH 60
           MGS+ AFS+ S   +  PK ++  +       LS+      P +Q  F    K+  SP  
Sbjct: 83  MGSSGAFSLCSHTNIFTPKFTNLKLSYDSLKPLSLTN----PKNQFTFLKI-KLLKSP-- 142

Query: 61  NPPFSNLPESDICRSTSPQIKISTYFVERFVGFLVGSFIFMGCFNVRYARALPAQTSSKN 120
                      I   + P   +    +++ VGFLVGS  F+GCFN+R A A+P+QTS  +
Sbjct: 143 ---------KTITHFSKPHKNLHRLLLDKAVGFLVGSVFFIGCFNIRAAIAVPSQTSGSS 202

Query: 121 PTLAE-KAQAPEEDSEEEMRERILEHDPTNIDTLKSVLYGKMRSGKTEEAIKYVKRLIDL 180
               E +    EE  EEE+ E++LE +P N++ LK VLYGKMR GKT+EA+KYV+RL++L
Sbjct: 203 AKFEEIRDTQKEETEEEELYEKLLEKEPKNVEALKVVLYGKMRRGKTKEAVKYVERLVEL 262

Query: 181 EPDEVEWKLLLALCYETLGQLDTAKRLFMEILEKKPLLVRALHGLALVMHKNNEGQSVFE 240
           EP+EVEW+LL+AL YE +GQL  AKRLF EILE++PL +RALHGLAL MHKNNEG +VF+
Sbjct: 263 EPEEVEWRLLMALSYEMMGQLSVAKRLFKEILEERPLFLRALHGLALAMHKNNEGPAVFK 322

Query: 241 MLNKALDFACDEKKLTEMRSIGILIAQMHVVKGELEEGLKKFQDLVDENPRDFRPYLCQG 300
           MLN+AL+ A  EK++TE R+I ILIAQMHVV+GELEEGL++FQ LVDE+ RDFRPYLC G
Sbjct: 323 MLNEALEIARREKRVTEERNIRILIAQMHVVRGELEEGLQEFQTLVDEDHRDFRPYLCLG 382

Query: 301 IIYSLMDKKKEAAEQFATYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDAEFTHKK 360
           IIYSLMDKK+EAAEQF TY+ALVP+EFPQR F+DDV+L+A   SREQ QKEF AE+++ K
Sbjct: 383 IIYSLMDKKEEAAEQFETYRALVPEEFPQRNFLDDVVLAAKKQSREQLQKEFKAEYSNWK 426

BLAST of Cla008484 vs. NCBI nr
Match: gi|449448428|ref|XP_004141968.1| (PREDICTED: protein SLOW GREEN 1, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 605.5 bits (1560), Expect = 5.9e-170
Identity = 310/362 (85.64%), Postives = 333/362 (91.99%), Query Frame = 1

Query: 1   MGSTSA--FSVLSQLELPGP-KSSSYNVRALPKCRLSILRKNYKPTSQSLFYSAAKIFHS 60
           MGSTSA  FSV SQ+ELP P K SSYNVRAL KC+ +IL+KNYK +SQSLF S AKIFHS
Sbjct: 1   MGSTSASTFSVSSQIELPRPPKFSSYNVRALSKCQYNILQKNYKLSSQSLFCSHAKIFHS 60

Query: 61  PIHNPPFSNLPESDICRSTSPQIKISTYFVERFVGFLVGSFIFMGCFNVRYARALPAQTS 120
           PIHN PFSNL ESDI R  SPQIKIS YF+E+FVGFLVGSFIFMGCFNVRY RALPAQTS
Sbjct: 61  PIHNTPFSNLSESDIRRFNSPQIKISKYFIEKFVGFLVGSFIFMGCFNVRYVRALPAQTS 120

Query: 121 SKNPTLAEKAQAPEEDSEEEMRERILEHDPTNIDTLKSVLYGKMRSGKTEEAIKYVKRLI 180
           +KNP LAEKAQ PEEDSEE M ERILEHDP+N+DTLK+VLYGKMRSGKTE A+KYVKRLI
Sbjct: 121 NKNPILAEKAQVPEEDSEEVMWERILEHDPSNVDTLKAVLYGKMRSGKTENAVKYVKRLI 180

Query: 181 DLEPDEVEWKLLLALCYETLGQLDTAKRLFMEILEKKPLLVRALHGLALVMHKNNEGQSV 240
           DLEPDEVEW++LLALCYE LG+L TAKRLFMEIL++KPLLVRALHGLALVMHKNNEG+SV
Sbjct: 181 DLEPDEVEWRILLALCYEILGELGTAKRLFMEILKQKPLLVRALHGLALVMHKNNEGESV 240

Query: 241 FEMLNKALDFACDEKKLTEMRSIGILIAQMHVVKGELEEGLKKFQDLVDENPRDFRPYLC 300
           FEMLNKALD A DEKKLTE RSIGILIAQMHVVKGELEEGLKKFQ+LV+ENPRDFRP+LC
Sbjct: 241 FEMLNKALDIARDEKKLTEHRSIGILIAQMHVVKGELEEGLKKFQNLVEENPRDFRPHLC 300

Query: 301 QGIIYSLMDKKKEAAEQFATYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDAEFTH 360
           QGIIYSL+DKKKEAAEQF TYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDAEFT+
Sbjct: 301 QGIIYSLLDKKKEAAEQFETYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDAEFTN 360

BLAST of Cla008484 vs. NCBI nr
Match: gi|778717985|ref|XP_011657787.1| (PREDICTED: protein SLOW GREEN 1, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 599.7 bits (1545), Expect = 3.3e-168
Identity = 310/366 (84.70%), Postives = 333/366 (90.98%), Query Frame = 1

Query: 1   MGSTSA--FSVLSQLELPGP-KSSSYNVRALPKCRLSILRKNYKPTSQSLFYSAAKIFHS 60
           MGSTSA  FSV SQ+ELP P K SSYNVRAL KC+ +IL+KNYK +SQSLF S AKIFHS
Sbjct: 1   MGSTSASTFSVSSQIELPRPPKFSSYNVRALSKCQYNILQKNYKLSSQSLFCSHAKIFHS 60

Query: 61  PIHNPPFSNLPESDICRSTSPQIKISTYFVERFVGFLVGSFIFMGCFNVRYARALPAQTS 120
           PIHN PFSNL ESDI R  SPQIKIS YF+E+FVGFLVGSFIFMGCFNVRY RALPAQTS
Sbjct: 61  PIHNTPFSNLSESDIRRFNSPQIKISKYFIEKFVGFLVGSFIFMGCFNVRYVRALPAQTS 120

Query: 121 SKNPTLAEKAQAPEEDSEEEMRERILEHDPTNIDTLKSVLYGKMRSGKTEEAIKYVKRLI 180
           +KNP LAEKAQ PEEDSEE M ERILEHDP+N+DTLK+VLYGKMRSGKTE A+KYVKRLI
Sbjct: 121 NKNPILAEKAQVPEEDSEEVMWERILEHDPSNVDTLKAVLYGKMRSGKTENAVKYVKRLI 180

Query: 181 DLEPDEVEWKLLLALCYETLGQLDTAKRLFMEILEKKPLLVRALHGLALVMHKNNEGQSV 240
           DLEPDEVEW++LLALCYE LG+L TAKRLFMEIL++KPLLVRALHGLALVMHKNNEG+SV
Sbjct: 181 DLEPDEVEWRILLALCYEILGELGTAKRLFMEILKQKPLLVRALHGLALVMHKNNEGESV 240

Query: 241 FEMLNKALDFACDEKKLTEMRSIGILIAQMHVVK----GELEEGLKKFQDLVDENPRDFR 300
           FEMLNKALD A DEKKLTE RSIGILIAQMHVVK    GELEEGLKKFQ+LV+ENPRDFR
Sbjct: 241 FEMLNKALDIARDEKKLTEHRSIGILIAQMHVVKFVFQGELEEGLKKFQNLVEENPRDFR 300

Query: 301 PYLCQGIIYSLMDKKKEAAEQFATYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDA 360
           P+LCQGIIYSL+DKKKEAAEQF TYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDA
Sbjct: 301 PHLCQGIIYSLLDKKKEAAEQFETYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDA 360

BLAST of Cla008484 vs. NCBI nr
Match: gi|659079198|ref|XP_008440127.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484686 [Cucumis melo])

HSP 1 Score: 599.4 bits (1544), Expect = 4.3e-168
Identity = 311/358 (86.87%), Postives = 331/358 (92.46%), Query Frame = 1

Query: 3   STSAFSVLSQLELPGP-KSSSYNVRALPKCRLSILRKNYKPTSQSLFYSAAKIFHSPIHN 62
           STSAFSV SQ+ELPGP K SSYNVRAL   R SIL+KNYK +SQSLFYS  KIFHSPIHN
Sbjct: 5   STSAFSVSSQIELPGPPKFSSYNVRALSNFRFSILQKNYKLSSQSLFYSP-KIFHSPIHN 64

Query: 63  PPFSNLPESDICRSTSPQIKISTYFVERFVGFLVGSFIFMGCFNVRYARALPAQTSSKNP 122
             FSNL ESDI RSTSPQIK+S Y VE+FVGFLVGSFIFMGCFN+RYARALPAQTSSKNP
Sbjct: 65  TLFSNLSESDIRRSTSPQIKLSKYIVEKFVGFLVGSFIFMGCFNLRYARALPAQTSSKNP 124

Query: 123 TLAEKAQAPEEDSEEEMRERILEHDPTNIDTLKSVLYGKMRSGKTEEAIKYVKRLIDLEP 182
           TLAEKAQ PE DSEE M ERILEHDP+N+DTLK+VLYGKMRSGKTEEAIKYVKRLIDLEP
Sbjct: 125 TLAEKAQIPEGDSEE-MWERILEHDPSNVDTLKAVLYGKMRSGKTEEAIKYVKRLIDLEP 184

Query: 183 DEVEWKLLLALCYETLGQLDTAKRLFMEILEKKPLLVRALHGLALVMHKNNEGQSVFEML 242
           DEVEW+LLLALCYETLG+L TAKRLFMEIL++KPLLVRALHGLALVMHKNNEG+SVFEML
Sbjct: 185 DEVEWRLLLALCYETLGELGTAKRLFMEILKQKPLLVRALHGLALVMHKNNEGESVFEML 244

Query: 243 NKALDFACDEKKLTEMRSIGILIAQMHVVKGELEEGLKKFQDLVDENPRDFRPYLCQGII 302
           NKALD A DEKKL E RSIGILIAQMHVVKGELEEGLKKFQ+LV+ENPRDFRP+LCQGII
Sbjct: 245 NKALDIARDEKKLAEHRSIGILIAQMHVVKGELEEGLKKFQNLVEENPRDFRPHLCQGII 304

Query: 303 YSLMDKKKEAAEQFATYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDAEFTHKK 360
           YSL+DKKKEAAEQF  YQALVPDEFPQREFIDD+MLSATTASREQFQKEFDAEFT+KK
Sbjct: 305 YSLLDKKKEAAEQFEIYQALVPDEFPQREFIDDIMLSATTASREQFQKEFDAEFTNKK 360

BLAST of Cla008484 vs. NCBI nr
Match: gi|778717990|ref|XP_011657788.1| (PREDICTED: protein SLOW GREEN 1, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 440.3 bits (1131), Expect = 3.3e-120
Identity = 228/274 (83.21%), Postives = 246/274 (89.78%), Query Frame = 1

Query: 1   MGSTSA--FSVLSQLELPGP-KSSSYNVRALPKCRLSILRKNYKPTSQSLFYSAAKIFHS 60
           MGSTSA  FSV SQ+ELP P K SSYNVRAL KC+ +IL+KNYK +SQSLF S AKIFHS
Sbjct: 1   MGSTSASTFSVSSQIELPRPPKFSSYNVRALSKCQYNILQKNYKLSSQSLFCSHAKIFHS 60

Query: 61  PIHNPPFSNLPESDICRSTSPQIKISTYFVERFVGFLVGSFIFMGCFNVRYARALPAQTS 120
           PIHN PFSNL ESDI R  SPQIKIS YF+E+FVGFLVGSFIFMGCFNVRY RALPAQTS
Sbjct: 61  PIHNTPFSNLSESDIRRFNSPQIKISKYFIEKFVGFLVGSFIFMGCFNVRYVRALPAQTS 120

Query: 121 SKNPTLAEKAQAPEEDSEEEMRERILEHDPTNIDTLKSVLYGKMRSGKTEEAIKYVKRLI 180
           +KNP LAEKAQ PEEDSEE M ERILEHDP+N+DTLK+VLYGKMRSGKTE A+KYVKRLI
Sbjct: 121 NKNPILAEKAQVPEEDSEEVMWERILEHDPSNVDTLKAVLYGKMRSGKTENAVKYVKRLI 180

Query: 181 DLEPDEVEWKLLLALCYETLGQLDTAKRLFMEILEKKPLLVRALHGLALVMHKNNEGQSV 240
           DLEPDEVEW++LLALCYE LG+L TAKRLFMEIL++KPLLVRALHGLALVMHKNNEG+SV
Sbjct: 181 DLEPDEVEWRILLALCYEILGELGTAKRLFMEILKQKPLLVRALHGLALVMHKNNEGESV 240

Query: 241 FEMLNKALDFACDEKKLTEMRSIGILIAQMHVVK 272
           FEMLNKALD A DEKKLTE RSIGILIAQMHVVK
Sbjct: 241 FEMLNKALDIARDEKKLTEHRSIGILIAQMHVVK 274

BLAST of Cla008484 vs. NCBI nr
Match: gi|1009146755|ref|XP_015891041.1| (PREDICTED: protein SLOW GREEN 1, chloroplastic isoform X1 [Ziziphus jujuba])

HSP 1 Score: 392.9 bits (1008), Expect = 6.1e-106
Identity = 211/361 (58.45%), Postives = 265/361 (73.41%), Query Frame = 1

Query: 3   STSAFSVLSQLELPGPKSSSY-------NVRALPKCRLSILRKNYKPTSQSLFYSAAKIF 62
           S++ FS+ +Q  +  P   SY       N    PK  +S+  K  +PT  S      +  
Sbjct: 2   SSTTFSLSAQAHITTPSGHSYKLCCKSPNSSQTPKS-ISVRLKPNRPTKPSSL--CTRFS 61

Query: 63  HSPIHNPPFSNLPESDICRSTSPQIKISTYFVERFVGFLVGSFIFMGCFNVRYARALPAQ 122
           HSP       +   S+  RS +PQ  +    VE+FVGF++GS IF+GCFNVR A ALPA 
Sbjct: 62  HSP-------SSVSSNSDRSVTPQKNLQRILVEKFVGFVIGSVIFVGCFNVRGAIALPAP 121

Query: 123 TSSKNPTLAEKAQAPEEDSEEEMRERILEHDPTNIDTLKSVLYGKMRSGKTEEAIKYVKR 182
           TSS +    E+ +   ED  EE+ E+ILE +P N++ LK VLYGKMR GKT+EA++YV++
Sbjct: 122 TSSYSNANLEEGRDKSED--EELYEKILEKEPRNVEALKVVLYGKMRRGKTKEAVRYVEK 181

Query: 183 LIDLEPDEVEWKLLLALCYETLGQLDTAKRLFMEILEKKPLLVRALHGLALVMHKNNEGQ 242
           LID+EPDEVEW+LLLALCYE +GQL TAKRLF EIL ++PLLVRALHGLALVMHKN+EG 
Sbjct: 182 LIDMEPDEVEWRLLLALCYEIMGQLSTAKRLFKEILVERPLLVRALHGLALVMHKNHEGP 241

Query: 243 SVFEMLNKALDFACDEKKLTEMRSIGILIAQMHVVKGELEEGLKKFQDLVDENPRDFRPY 302
           +VFEMLNKAL+ A   K++TE R+I ILIAQMHVV GELEE L+KFQDL+DE+ RDFRPY
Sbjct: 242 AVFEMLNKALEVARHAKRVTEERNIKILIAQMHVVMGELEEALQKFQDLIDEDHRDFRPY 301

Query: 303 LCQGIIYSLMDKKKEAAEQFATYQALVPDEFPQREFIDDVMLSATTASREQFQKEFDAEF 357
           LCQGIIYSL+DKKKEAAEQF TY++LVP+EFPQR F+DDV+L+A T  +E+FQKEF AEF
Sbjct: 302 LCQGIIYSLLDKKKEAAEQFETYRSLVPEEFPQRRFLDDVVLAAKTQPKEKFQKEFAAEF 350

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SG1_ARATH1.4e-4134.92protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana GN=SG1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KHZ0_CUCSA4.1e-17085.64Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486920 PE=4 SV=1[more]
M5WBE5_PRUPE2.1e-10556.72Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007407mg PE=4 SV=1[more]
A0A061DJY5_THECC2.4e-10157.85Tetratricopeptide repeat-like superfamily protein isoform 1 OS=Theobroma cacao G... [more]
A0A0D2SJC8_GOSRA5.9e-10056.63Uncharacterized protein OS=Gossypium raimondii GN=B456_007G246100 PE=4 SV=1[more]
W9QLI1_9ROSA3.8e-9955.00Uncharacterized protein OS=Morus notabilis GN=L484_005182 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449448428|ref|XP_004141968.1|5.9e-17085.64PREDICTED: protein SLOW GREEN 1, chloroplastic isoform X2 [Cucumis sativus][more]
gi|778717985|ref|XP_011657787.1|3.3e-16884.70PREDICTED: protein SLOW GREEN 1, chloroplastic isoform X1 [Cucumis sativus][more]
gi|659079198|ref|XP_008440127.1|4.3e-16886.87PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484686 [Cucumis me... [more]
gi|778717990|ref|XP_011657788.1|3.3e-12083.21PREDICTED: protein SLOW GREEN 1, chloroplastic isoform X3 [Cucumis sativus][more]
gi|1009146755|ref|XP_015891041.1|6.1e-10658.45PREDICTED: protein SLOW GREEN 1, chloroplastic isoform X1 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008484Cla008484.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 141..324
score: 1.7
IPR011990Tetratricopeptide-like helical domainunknownSSF48452TPR-likecoord: 144..331
score: 3.51
IPR013026Tetratricopeptide repeat-containing domainPROFILEPS50293TPR_REGIONcoord: 140..325
score: 20
NoneNo IPR availablePANTHERPTHR26312FAMILY NOT NAMEDcoord: 11..355
score: 5.0E
NoneNo IPR availablePANTHERPTHR26312:SF67SUBFAMILY NOT NAMEDcoord: 11..355
score: 5.0E
NoneNo IPR availablePFAMPF14559TPR_19coord: 161..219
score: 2.

The following gene(s) are paralogous to this gene:

None