Cla006954 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006954
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Fimbrin (AHRD V1 ***- FIMB_DICDI); contains Interpro domain(s) IPR018248 EF hand
Location	Chr6 : 332679 .. 332957 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAATCTCACATCTTCCTTCACTACCTTCTTCCATAGGAACATTATTACCTCAAAACCCTTCTTCAAGAAATCCCTAAACAACCAAAAGCTACCTTCTTTCACCACTTTTAACCACTTTGAGCTCCTCTTCAACCTCCTTGACTCCAATGGTGATGGAAAGATCTCCACGAAAGAGCTCCGTCGGTTTCTCTATCGCTTAGGTTATAAAAAGTTGAAAGCTAGAACAGAAGCTAAGGATATGGTGAAGGAAATGGATTCCGACCGTGATGGATGA

mRNA sequence

ATGTTCAATCTCACATCTTCCTTCACTACCTTCTTCCATAGGAACATTATTACCTCAAAACCCTTCTTCAAGAAATCCCTAAACAACCAAAAGCTACCTTCTTTCACCACTTTTAACCACTTTGAGCTCCTCTTCAACCTCCTTGACTCCAATGGTGATGGAAAGATCTCCACGAAAGAGCTCCGTCGGTTTCTCTATCGCTTAGGTTATAAAAAGTTGAAAGCTAGAACAGAAGCTAAGGATATGGTGAAGGAAATGGATTCCGACCGTGATGGATGA

Coding sequence (CDS)

ATGTTCAATCTCACATCTTCCTTCACTACCTTCTTCCATAGGAACATTATTACCTCAAAACCCTTCTTCAAGAAATCCCTAAACAACCAAAAGCTACCTTCTTTCACCACTTTTAACCACTTTGAGCTCCTCTTCAACCTCCTTGACTCCAATGGTGATGGAAAGATCTCCACGAAAGAGCTCCGTCGGTTTCTCTATCGCTTAGGTTATAAAAAGTTGAAAGCTAGAACAGAAGCTAAGGATATGGTGAAGGAAATGGATTCCGACCGTGATGGATGA

Protein sequence

MFNLTSSFTTFFHRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAKDMVKEMDSDRDG

Homology

[Close]

BLAST of Cla006954 vs. TrEMBL
Match: A0A0A0K8Z4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G076830 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 7.6e-36
Identity = 80/93 (86.02%), Postives = 87/93 (93.55%), Query Frame = 1


Query: 1  MFNLTSS-FTTFFHRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTK 60
          MFNLTSS F TFFHRNI +SKPFF+KSLNNQKLPSFTTFNHF+LLFNLLDS+GDGKISTK
Sbjct: 1  MFNLTSSLFPTFFHRNI-SSKPFFQKSLNNQKLPSFTTFNHFQLLFNLLDSDGDGKISTK 60

Query: 61 ELRRFLYRLGYKKLKARTEAKDMVKEMDSDRDG 93
          EL +FLYRLGYKKLKA  EA++MVKEMDSDRDG
Sbjct: 61 ELSQFLYRLGYKKLKATMEAEEMVKEMDSDRDG 92

[Close]

BLAST of Cla006954 vs. TrEMBL
Match: A0A067JXS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14512 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-07
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 1


Query: 7   SFTTFF---HRNIITSKPFFKKSLNNQKL-----PSFTTF---NHFELLFNLLDSNGDGK 66
           SFTT      R +I      K++L++        PSF +    N F+ +FNL+D+NGDGK
Sbjct: 4   SFTTCLSSLRRRVIAKLTKHKRNLSSSTFDFSDTPSFASMEIPNQFKQVFNLIDANGDGK 63

Query: 67  ISTKELRRFLYRLGYKKLKARTEAKDMVKEMDSDRDG 93
           IS+ +L   L  LG  K KA+ EA+ MVKE+D + DG
Sbjct: 64  ISSYDLIELLLCLGCDKSKAKAEAEGMVKELDRNGDG 100

[Close]

BLAST of Cla006954 vs. TrEMBL
Match: A0A067JXS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14512 PE=4 SV=1)

HSP 1 Score: 40.4 bits (93), Expect = 1.4e+00
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 1


Query: 45  FNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAKDMVKEMDSDRDG 93
           F + D++ +G IS KEL++ L RLG++K   + E + M+K +D D DG
Sbjct: 124 FMIFDADKNGLISAKELQKVLSRLGFEKCSLK-ECRIMIKGVDKDGDG 170

HSP 2 Score: 61.2 bits (147), Expect = 7.5e-07
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 33 PSFTTF---NHFELLFNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAKDMVKEMDSD 92
          PSF      N F+ +F L+D+NGDGKIS+ EL   L  LG+ K KA +EA+ MV+EMD +
Sbjct: 24 PSFAAMEVHNQFKQVFKLIDANGDGKISSCELSELLLCLGFDKSKATSEAEGMVREMDCN 83

[Close]

BLAST of Cla006954 vs. TrEMBL
Match: B9RDE4_RICCO (Calmodulin, putative OS=Ricinus communis GN=RCOM_1612330 PE=4 SV=1)

HSP 1 Score: 31.2 bits (69), Expect = 8.3e+02
Identity = 16/48 (33.33%), Postives = 28/48 (58.33%), Query Frame = 1


Query: 45  FNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAKDMVKEMDSDRDG 93
           F + D++ +G IS +EL++ L  LG      + + + M+K +D D DG
Sbjct: 119 FLIFDADKNGLISAEELKKVLTNLGCDNCSLK-KCRRMIKGVDKDGDG 165

HSP 2 Score: 59.7 bits (143), Expect = 2.2e-06
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 32  LPSFTTFNHFELLFNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAKDMVKEMDSDRD 91
           LPS       E +F+L+D+NGDGKIS+ ELR  L RLG+ +  A + A++M++E D + D
Sbjct: 46  LPSLEIAQQLEHVFSLIDANGDGKISSTELRHLLRRLGHPRSSASSAAREMLREADDNGD 105

Query: 92  G 93
           G
Sbjct: 106 G 106

[Close]

BLAST of Cla006954 vs. TrEMBL
Match: W9QZX9_9ROSA (Putative calcium-binding protein CML25 OS=Morus notabilis GN=L484_022442 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-06
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1


Query: 39  NHFELLFNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAKDMVKEMDSDRDG 93
           N F+ +F ++D NGDGKIS  EL + L  LGYKK  A  EA+ MV+EMD + DG
Sbjct: 55  NQFKQVFEVIDENGDGKISPSELSQVLLCLGYKKSIATKEAEGMVREMDGNGDG 108

[Close]

BLAST of Cla006954 vs. NCBI nr
Match: gi|449470826|ref|XP_004153117.1| (PREDICTED: calmodulin-beta-like [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 80/93 (86.02%), Postives = 87/93 (93.55%), Query Frame = 1


Query: 1  MFNLTSS-FTTFFHRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTK 60
          MFNLTSS F TFFHRNI +SKPFF+KSLNNQKLPSFTTFNHF+LLFNLLDS+GDGKISTK
Sbjct: 1  MFNLTSSLFPTFFHRNI-SSKPFFQKSLNNQKLPSFTTFNHFQLLFNLLDSDGDGKISTK 60

Query: 61 ELRRFLYRLGYKKLKARTEAKDMVKEMDSDRDG 93
          EL +FLYRLGYKKLKA  EA++MVKEMDSDRDG
Sbjct: 61 ELSQFLYRLGYKKLKATMEAEEMVKEMDSDRDG 92

[Close]

BLAST of Cla006954 vs. NCBI nr
Match: gi|659120319|ref|XP_008460131.1| (PREDICTED: calmodulin-beta-like [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-35
Identity = 79/93 (84.95%), Postives = 86/93 (92.47%), Query Frame = 1


Query: 1  MFNLTSS-FTTFFHRNIITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKISTK 60
          M NLTSS F+TFFHRNI TSKPFF+KSLNNQKLPSFTTFNHF+LLFN+LDS GDGKISTK
Sbjct: 1  MLNLTSSLFSTFFHRNI-TSKPFFQKSLNNQKLPSFTTFNHFQLLFNILDSGGDGKISTK 60

Query: 61 ELRRFLYRLGYKKLKARTEAKDMVKEMDSDRDG 93
          EL +FLYRLGYKKLKA  EA++MVKEMDSDRDG
Sbjct: 61 ELSQFLYRLGYKKLKATMEAEEMVKEMDSDRDG 92

[Close]

BLAST of Cla006954 vs. NCBI nr
Match: gi|802699492|ref|XP_012083557.1| (PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas])

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-07
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 1


Query: 7   SFTTFF---HRNIITSKPFFKKSLNNQKL-----PSFTTF---NHFELLFNLLDSNGDGK 66
           SFTT      R +I      K++L++        PSF +    N F+ +FNL+D+NGDGK
Sbjct: 4   SFTTCLSSLRRRVIAKLTKHKRNLSSSTFDFSDTPSFASMEIPNQFKQVFNLIDANGDGK 63

Query: 67  ISTKELRRFLYRLGYKKLKARTEAKDMVKEMDSDRDG 93
           IS+ +L   L  LG  K KA+ EA+ MVKE+D + DG
Sbjct: 64  ISSYDLIELLLCLGCDKSKAKAEAEGMVKELDRNGDG 100

[Close]

BLAST of Cla006954 vs. NCBI nr
Match: gi|802699492|ref|XP_012083557.1| (PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas])

HSP 1 Score: 40.4 bits (93), Expect = 2.0e+00
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 1


Query: 45  FNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAKDMVKEMDSDRDG 93
           F + D++ +G IS KEL++ L RLG++K   + E + M+K +D D DG
Sbjct: 124 FMIFDADKNGLISAKELQKVLSRLGFEKCSLK-ECRIMIKGVDKDGDG 170

HSP 2 Score: 63.5 bits (153), Expect = 2.2e-07
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 1


Query: 1  MFNLTSSFTTFFHRNI--ITSKPFFKKSLNNQKLPSFTTFNHFELLFNLLDSNGDGKIST 60
          MF L  +F T  ++ +  + + P   K++N  K P+    N F+ +F L+D+NGDGKIST
Sbjct: 1  MFGLFGTFFTVLNKKVKFLFNHP---KNINIIKDPNMGMSNQFKQIFELIDTNGDGKIST 60

Query: 61 KELRRFLYRLGYK-KLKARTEAKDMVKEMDSDRDG 93
           EL + L  LGYK  + A  EA+ MV  +DS+ DG
Sbjct: 61 NELTKLLSCLGYKDNIIATKEAEGMVNVLDSNGDG 92

[Close]

BLAST of Cla006954 vs. NCBI nr
Match: gi|502104851|ref|XP_004492663.1| (PREDICTED: calmodulin-like protein 3 [Cicer arietinum])

HSP 1 Score: 32.3 bits (72), Expect = 5.3e+02
Identity = 17/48 (35.42%), Postives = 27/48 (56.25%), Query Frame = 1


Query: 45  FNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAKDMVKEMDSDRDG 93
           F + D++ +G IS KEL+R +  L +       E K M+K +D + DG
Sbjct: 126 FLVFDTDKNGLISAKELKRVMINLEFDNCSVE-ECKRMIKGVDKNGDG 172

HSP 2 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 33  PSFTTF---NHFELLFNLLDSNGDGKISTKELRRFLYRLGYKKLKARTEAKDMVKEMDSD 92
           PSF      N F+ +F L+D+NGDGKIS+ EL   L  LG+ K KA +EA+ MV+EMD +
Sbjct: 45  PSFAAMEVHNQFKQVFKLIDANGDGKISSCELSELLLCLGFDKSKATSEAEGMVREMDCN 104

The following BLAST results are available for this feature:

BLAST of Cla006954 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8Z4_CUCSA	7.6e-36	86.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G076830 PE=4 SV=1	[more]
A0A067JXS4_JATCU	1.5e-07	41.24	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14512 PE=4 SV=1	[more]
A0A067JXS4_JATCU	1.4e+00	41.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14512 PE=4 SV=1	[more]
B9RDE4_RICCO	8.3e+02	33.33	Calmodulin, putative OS=Ricinus communis GN=RCOM_1612330 PE=4 SV=1	[more]
W9QZX9_9ROSA	2.8e-06	53.70	Putative calcium-binding protein CML25 OS=Morus notabilis GN=L484_022442 PE=4 SV...	[more]

BLAST of Cla006954 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470826\|ref\|XP_004153117.1\|	1.1e-35	86.02	PREDICTED: calmodulin-beta-like [Cucumis sativus]	[more]
gi\|659120319\|ref\|XP_008460131.1\|	2.4e-35	84.95	PREDICTED: calmodulin-beta-like [Cucumis melo]	[more]
gi\|802699492\|ref\|XP_012083557.1\|	2.2e-07	41.24	PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]	[more]
gi\|802699492\|ref\|XP_012083557.1\|	2.0e+00	41.67	PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]	[more]
gi\|502104851\|ref\|XP_004492663.1\|	5.3e+02	35.42	PREDICTED: calmodulin-like protein 3 [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU37781	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU57097	watermelon EST collection version 2.0	transcribed_cluster
WMU69944	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006954	Cla006954.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU37781	WMU37781	transcribed_cluster
WMU57097	WMU57097	transcribed_cluster
WMU69944	WMU69944	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 43..92 score: 1.
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 40..68 score: 0.
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 36..71 score: 13.286coord: 74..92 score:
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 40..92 score: 4.0
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 35..92 score: 3.59
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 49..61 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006954	Cla97C06G109590	Watermelon (97103) v2	wmwmbB407
Cla006954	Csa6G076830	Cucumber (Chinese Long) v2	cuwmB537
Cla006954	MELO3C022506	Melon (DHL92) v3.5.1	mewmB140
Cla006954	CSPI06G05810	Wild cucumber (PI 183967)	cpiwmB556
Cla006954	Cucsa.362850	Cucumber (Gy14) v1	cgywmB666
Cla006954	Lsi09G019020	Bottle gourd (USVL1VR-Ls)	lsiwmB041
Cla006954	CsGy6G005790	Cucumber (Gy14) v2	cgybwmB501
Cla006954	MELO3C022506.2	Melon (DHL92) v3.6.1	medwmB138
Cla006954	CsaV3_6G006120	Cucumber (Chinese Long) v3	cucwmB562

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006954	Cucumber (Gy14) v2	cgybwmB259
Cla006954	Melon (DHL92) v3.6.1	medwmB473
Cla006954	Silver-seed gourd	carwmB0221
Cla006954	Silver-seed gourd	carwmB0619
Cla006954	Silver-seed gourd	carwmB1079
Cla006954	Cucumber (Chinese Long) v3	cucwmB285
Cla006954	Cucumber (Chinese Long) v3	cucwmB291
Cla006954	Wax gourd	wgowmB099
Cla006954	Watermelon (97103) v2	wmwmbB398
Cla006954	Watermelon (97103) v2	wmwmbB405
Cla006954	Wax gourd	wgowmB107
Cla006954	Wax gourd	wgowmB162
Cla006954	Watermelon (97103) v1	wmwmB137
Cla006954	Watermelon (97103) v1	wmwmB140
Cla006954	Cucumber (Gy14) v1	cgywmB484
Cla006954	Cucurbita maxima (Rimu)	cmawmB251
Cla006954	Cucurbita maxima (Rimu)	cmawmB326
Cla006954	Cucurbita maxima (Rimu)	cmawmB353
Cla006954	Cucurbita maxima (Rimu)	cmawmB810
Cla006954	Cucurbita maxima (Rimu)	cmawmB874
Cla006954	Cucurbita moschata (Rifu)	cmowmB241
Cla006954	Cucurbita moschata (Rifu)	cmowmB320
Cla006954	Cucurbita moschata (Rifu)	cmowmB348
Cla006954	Cucurbita moschata (Rifu)	cmowmB801
Cla006954	Cucurbita moschata (Rifu)	cmowmB862
Cla006954	Melon (DHL92) v3.5.1	mewmB484
Cla006954	Melon (DHL92) v3.5.1	mewmB488
Cla006954	Watermelon (Charleston Gray)	wcgwmB309
Cla006954	Watermelon (Charleston Gray)	wcgwmB314
Cla006954	Watermelon (Charleston Gray)	wcgwmB345
Cla006954	Cucumber (Chinese Long) v2	cuwmB276
Cla006954	Cucurbita pepo (Zucchini)	cpewmB157
Cla006954	Cucurbita pepo (Zucchini)	cpewmB342
Cla006954	Cucurbita pepo (Zucchini)	cpewmB625
Cla006954	Cucurbita pepo (Zucchini)	cpewmB854
Cla006954	Bottle gourd (USVL1VR-Ls)	lsiwmB385