Cla006296 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006296
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Slowmo homolog 2 (AHRD V1 **-- B5XGX8_SALSA); contains Interpro domain(s) IPR006797 PRELI/MSF1
Location	Chr3 : 23288787 .. 23289344 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAAAGCATACTCTCAGGAGTACACTTACAAGCACCCGTGGGAACGGGTAACTTGTGCATCTTGGCGTAAATTTGCCGACCCTGAAAACAAGCGTACATTGTCCCATATTCTTGAAGTTGACACCTTAAACAGAAAGGTTGACCCTGAATCTGGGAAGCTATATACAACCCGTGCTATCACCATACATGCCCCAGGACCATGGTTTGTTCGTAAAATTGTTGGTCAGGATATCTGCCACTGTGTCGAAACCACGGTTGTAGATGCTCGGTCACAATCAATGCAACTCACCACTCGGAATATTAGTCTCCAGAAGTTCATAGAAGTGGTAGAGAAAATCAGGTATGAACCTCACCCAGAAAATCCGAACGGATGGACGATTTGCAAACAGGAGACCAGTATTCGGATCAAGCCATTGTCAGCACTGGCATCGATGGCCGAAAAAGTGGAGCAACGGTGTGCAGAGAGGTTCGTGCAAAACAGTGCCAAAGGTAGAGAAGTGATGGAGAGGATTTGTAAGTATCTTGAAGCAGAATCTAGTGGATTCTCAATCTAA

mRNA sequence

ATGGTTAAAGCATACTCTCAGGAGTACACTTACAAGCACCCGTGGGAACGGGTAACTTGTGCATCTTGGCGTAAATTTGCCGACCCTGAAAACAAGCGTACATTGTCCCATATTCTTGAAGTTGACACCTTAAACAGAAAGGTTGACCCTGAATCTGGGAAGCTATATACAACCCGTGCTATCACCATACATGCCCCAGGACCATGGTTTGTTCGTAAAATTGTTGGTCAGGATATCTGCCACTGTGTCGAAACCACGGTTGTAGATGCTCGGTCACAATCAATGCAACTCACCACTCGGAATATTAGTCTCCAGAAGTTCATAGAAGTGGTAGAGAAAATCAGGTATGAACCTCACCCAGAAAATCCGAACGGATGGACGATTTGCAAACAGGAGACCAGTATTCGGATCAAGCCATTGTCAGCACTGGCATCGATGGCCGAAAAAGTGGAGCAACGGTGTGCAGAGAGGTTCGTGCAAAACAGTGCCAAAGGTAGAGAAGTGATGGAGAGGATTTGTAAGTATCTTGAAGCAGAATCTAGTGGATTCTCAATCTAA

Coding sequence (CDS)

ATGGTTAAAGCATACTCTCAGGAGTACACTTACAAGCACCCGTGGGAACGGGTAACTTGTGCATCTTGGCGTAAATTTGCCGACCCTGAAAACAAGCGTACATTGTCCCATATTCTTGAAGTTGACACCTTAAACAGAAAGGTTGACCCTGAATCTGGGAAGCTATATACAACCCGTGCTATCACCATACATGCCCCAGGACCATGGTTTGTTCGTAAAATTGTTGGTCAGGATATCTGCCACTGTGTCGAAACCACGGTTGTAGATGCTCGGTCACAATCAATGCAACTCACCACTCGGAATATTAGTCTCCAGAAGTTCATAGAAGTGGTAGAGAAAATCAGGTATGAACCTCACCCAGAAAATCCGAACGGATGGACGATTTGCAAACAGGAGACCAGTATTCGGATCAAGCCATTGTCAGCACTGGCATCGATGGCCGAAAAAGTGGAGCAACGGTGTGCAGAGAGGTTCGTGCAAAACAGTGCCAAAGGTAGAGAAGTGATGGAGAGGATTTGTAAGTATCTTGAAGCAGAATCTAGTGGATTCTCAATCTAA

Protein sequence

MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRAITIHAPGPWFVRKIVGQDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHPENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAESSGFSI

Homology

[Close]

BLAST of Cla006296 vs. Swiss-Prot
Match: SLMO_DICDI (Protein slowmo homolog OS=Dictyostelium discoideum GN=slmo PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.3e-23
Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 1


Query: 8   EYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRAITIHAPG 67
           ++TYKH W   + AS+RK+  PE       IL +D L++++DP +G L  T+ I      
Sbjct: 8   KHTYKHLWSDASTASFRKYPSPERP----DILSIDILSKEIDPTTGVLKCTKLIICKGNT 67

Query: 68  PWFVRKIVGQDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHPENPNGWT 127
           P +++ I+G   C   E T VD +++ M L T+N++    + V E   YE HP+N   WT
Sbjct: 68  PSWLKSILGSGECLFYEETTVDPKNKIMTLKTKNLNFTNILGVDEVCTYEQHPDNEE-WT 127

Query: 128 ICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVME 171
           +  QE ++     S++  +A K+E  C +RFV N+ KGR++ME
Sbjct: 128 LFTQEATVT----SSIFGVARKMEAFCLDRFVANAGKGRKIME 161

[Close]

BLAST of Cla006296 vs. Swiss-Prot
Match: PLD3B_MOUSE (PRELI domain containing protein 3B OS=Mus musculus GN=Prelid3b PE=1 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 2.2e-19
Identity = 60/180 (33.33%), Postives = 100/180 (55.56%), Query Frame = 1


Query: 2   VKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRAI 61
           +K ++ E+ + HPWE VT A+ +K+ +P N      ++ VD L+R VDP SGKL++ R +
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHVDP-SGKLHSHRLL 60

Query: 62  TIHAPGPWFVRKIVG--QDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPH 121
           +     P  V+ ++G  +   +  E +VVD  +++M+L + NIS    + V E++ Y+PH
Sbjct: 61  STEWGLPSIVKSLIGAARTKTYVQEHSVVDPVTRTMELKSTNISFTNMVSVDERLTYKPH 120

Query: 122 PENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAE 180
            ++P   T+  QE  I +K +    S++  +E   A     N++KGRE ME +   L AE
Sbjct: 121 LQDPEK-TVLTQEALITVKGV----SLSSYLEGLMASTISSNASKGREAMEWVIHKLNAE 170

[Close]

BLAST of Cla006296 vs. Swiss-Prot
Match: UPS2_YEAST (Protein UPS2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UPS2 PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.4e-19
Identity = 46/166 (27.71%), Postives = 90/166 (54.22%), Query Frame = 1


Query: 2   VKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRAI 61
           +K +   Y + +PW++VT A+W+K+ +  +    +H++ VD L R++  +   L T R I
Sbjct: 1   MKLFQNSYDFNYPWDQVTAANWKKYPNEIS----THVIAVDVLRRELKDQGKVLVTERLI 60

Query: 62  TIHAPGP-WFVRKIVGQDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 121
           T+    P W +  + G ++ H  E +VVD   +S+ + + N+++   ++V E + Y PHP
Sbjct: 61  TVKQGVPKWIMMMLGGTNMSHVREVSVVDLNKKSLTMRSCNLTMCNLLKVYETVTYSPHP 120

Query: 122 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGR 167
           ++    T+ +QE   +I    ++  +  K+E    +RF +N+ KG+
Sbjct: 121 DDSANKTLFQQEA--QITAYGSIRKLCNKMEDWSVQRFCENAKKGK 160

[Close]

BLAST of Cla006296 vs. Swiss-Prot
Match: UPS2_SCHPO (UPS-like protein C36.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC36.10 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.4e-19
Identity = 54/172 (31.40%), Postives = 98/172 (56.98%), Query Frame = 1


Query: 2   VKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRAI 61
           +K +   + +++P+E+V+ A W+K+ +       +H++ VDTL+RKV  ++G LYT R I
Sbjct: 1   MKIFESCHLFQYPFEQVSAAHWQKYPNEH----ATHVIAVDTLDRKV-LDNGVLYTERLI 60

Query: 62  TIHAPGP-WFVRKIVGQDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 121
           T H   P W ++ I G   C+  ET+ VD +++++ L T N++    + V E + Y PHP
Sbjct: 61  TCHQALPRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDETVTYSPHP 120

Query: 122 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERI 173
           E     T+ +QE   RI+ L+ +  ++  +EQ   + F + +++G+E  E +
Sbjct: 121 ELEA--TVFQQEA--RIEALACMKRLSNLIEQWSVDGFGKKASRGKEGFESV 163

[Close]

BLAST of Cla006296 vs. Swiss-Prot
Match: PLD3B_PIG (PRELI domain containing protein 3B OS=Sus scrofa GN=PRELID3B PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.2e-18
Identity = 59/180 (32.78%), Postives = 97/180 (53.89%), Query Frame = 1


Query: 2   VKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRAI 61
           +K ++ E+ + HPWE VT A+ +K+ +P N      ++ VD L+R +D  SGKL++ R +
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPS----VVGVDVLDRHIDA-SGKLHSHRLL 60

Query: 62  TIHAPGPWFVRKIVG--QDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPH 121
           +     P  V+ I+G  +   +  E +VVD  +++M+L + NIS    + V E++ Y+PH
Sbjct: 61  STEWGLPSIVKSIIGAARTKTYVQEHSVVDPVAKTMELKSTNISFTNMVSVDERLIYKPH 120

Query: 122 PENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAE 180
           P++    T+  QE  I +K +    S+   +E   A     N+ KGRE ME +   L AE
Sbjct: 121 PQDSEK-TVLTQEAIITVKGV----SLGSYLEGLMASTISSNANKGREAMEWVIHKLNAE 170

[Close]

BLAST of Cla006296 vs. TrEMBL
Match: A0A0A0LXA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613520 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 2.3e-100
Identity = 180/185 (97.30%), Postives = 184/185 (99.46%), Query Frame = 1


Query: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60
           MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVD ESGKLYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 61  ITIHAPGPWFVRKIVGQDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120
           ITIHAPGPWFVRKIVGQDICHCVE+TVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180
           ENPNGWTICKQETSI+IKPLSALASMAEKVEQRCAE+FVQNSAKGREVMERICKYLEAES
Sbjct: 121 ENPNGWTICKQETSIQIKPLSALASMAEKVEQRCAEKFVQNSAKGREVMERICKYLEAES 180

Query: 181 SGFSI 186
           SGF+I
Sbjct: 181 SGFAI 185

[Close]

BLAST of Cla006296 vs. TrEMBL
Match: A0A0D2TL46_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G072300 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 5.2e-92
Identity = 163/185 (88.11%), Postives = 177/185 (95.68%), Query Frame = 1


Query: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60
           MVKAY+QE+ YKHPWERVT ASWRKFADPENKRTLSHILEVDTLNRK+DP SGKLYTTRA
Sbjct: 1   MVKAYAQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKLDPLSGKLYTTRA 60

Query: 61  ITIHAPGPWFVRKIVGQDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120
           +TIHAPGPWFVRKIVGQDICHCVE+TVVDA+S+SMQL TRN+SLQKFIEV EKIRY+PHP
Sbjct: 61  LTIHAPGPWFVRKIVGQDICHCVESTVVDAQSKSMQLATRNVSLQKFIEVEEKIRYDPHP 120

Query: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180
           +NP GWTIC+QETSIRIKPLSALASMAEKVEQRCAERF+QNS KGREVMERICKYLEAES
Sbjct: 121 DNPTGWTICRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAES 180

Query: 181 SGFSI 186
           SG ++
Sbjct: 181 SGMAL 185

[Close]

BLAST of Cla006296 vs. TrEMBL
Match: A0A061GTV2_THECC (MSF1-like family protein isoform 1 OS=Theobroma cacao GN=TCM_040594 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 6.8e-92
Identity = 159/185 (85.95%), Postives = 179/185 (96.76%), Query Frame = 1


Query: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60
           MVK Y+Q++ YKHPWERVT ASWRKFADPENKRTLSHILEVDTLNR++DP+SG+LYTTRA
Sbjct: 1   MVKGYTQDHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRRLDPDSGRLYTTRA 60

Query: 61  ITIHAPGPWFVRKIVGQDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120
           +TIHAPGPWF+RKI+GQDICHCVE+TVVDA+S+SMQLTTRN+SLQKFIEV EKIRY+PHP
Sbjct: 61  LTIHAPGPWFIRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLQKFIEVEEKIRYDPHP 120

Query: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180
           +NP GWTIC+QETSIRIKPLSALASMAEKVEQRCAERF+QNSAKGREVMERICKYLEAES
Sbjct: 121 DNPTGWTICRQETSIRIKPLSALASMAEKVEQRCAERFMQNSAKGREVMERICKYLEAES 180

Query: 181 SGFSI 186
           SG ++
Sbjct: 181 SGMAL 185

[Close]

BLAST of Cla006296 vs. TrEMBL
Match: W9RTE2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015260 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.4e-91
Identity = 161/185 (87.03%), Postives = 176/185 (95.14%), Query Frame = 1


Query: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60
           MV+AY QEYTY+HPWERVT ASWRKFADPENKRTLSHILEVDTLN K+DP+SGKLYTTRA
Sbjct: 1   MVRAYRQEYTYRHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPDSGKLYTTRA 60

Query: 61  ITIHAPGPWFVRKIVGQDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120
           ITIHAPGPWF+ KIVGQDICHCVE+TVVD +S+SMQLTTRNISLQKFIEV EKIRY+PHP
Sbjct: 61  ITIHAPGPWFIHKIVGQDICHCVESTVVDGQSRSMQLTTRNISLQKFIEVEEKIRYDPHP 120

Query: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180
           +NP+ W IC+Q+TSIRIKPLSALASMAEKVEQRCAE+FVQNSAKGREVMERICKYLEAES
Sbjct: 121 DNPDKWAICRQQTSIRIKPLSALASMAEKVEQRCAEKFVQNSAKGREVMERICKYLEAES 180

Query: 181 SGFSI 186
           SG S+
Sbjct: 181 SGISL 185

[Close]

BLAST of Cla006296 vs. TrEMBL
Match: M5W0C5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012045mg PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.4e-91
Identity = 160/184 (86.96%), Postives = 176/184 (95.65%), Query Frame = 1


Query: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60
           MVKAY+QEYTYKHPWERVT ASW+KFADPENKRTLSHILEVDTLN K+DP +GKLYTTRA
Sbjct: 1   MVKAYTQEYTYKHPWERVTSASWKKFADPENKRTLSHILEVDTLNHKLDPSTGKLYTTRA 60

Query: 61  ITIHAPGPWFVRKIVGQDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120
           IT+H+PGPWFVRKIV QD+CHCVE+TVVDA+++SMQLTT NISL+KFIEV EKIRY+PHP
Sbjct: 61  ITVHSPGPWFVRKIVRQDVCHCVESTVVDAKTRSMQLTTNNISLEKFIEVEEKIRYDPHP 120

Query: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180
           ENP+GWTIC+QETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES
Sbjct: 121 ENPDGWTICRQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180

Query: 181 SGFS 185
            G +
Sbjct: 181 KGLA 184

[Close]

BLAST of Cla006296 vs. NCBI nr
Match: gi|659099113|ref|XP_008450435.1| (PREDICTED: protein slowmo homolog [Cucumis melo])

HSP 1 Score: 375.6 bits (963), Expect = 5.2e-101
Identity = 182/185 (98.38%), Postives = 184/185 (99.46%), Query Frame = 1


Query: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60
           MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVD ESGKLYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 61  ITIHAPGPWFVRKIVGQDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120
           ITIHAPGPWFVRKIVGQDICHCVE+TVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180
           ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES
Sbjct: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180

Query: 181 SGFSI 186
           SGF+I
Sbjct: 181 SGFAI 185

[Close]

BLAST of Cla006296 vs. NCBI nr
Match: gi|778663639|ref|XP_011660128.1| (PREDICTED: protein slowmo homolog [Cucumis sativus])

HSP 1 Score: 372.9 bits (956), Expect = 3.3e-100
Identity = 180/185 (97.30%), Postives = 184/185 (99.46%), Query Frame = 1


Query: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60
           MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVD ESGKLYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 61  ITIHAPGPWFVRKIVGQDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120
           ITIHAPGPWFVRKIVGQDICHCVE+TVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180
           ENPNGWTICKQETSI+IKPLSALASMAEKVEQRCAE+FVQNSAKGREVMERICKYLEAES
Sbjct: 121 ENPNGWTICKQETSIQIKPLSALASMAEKVEQRCAEKFVQNSAKGREVMERICKYLEAES 180

Query: 181 SGFSI 186
           SGF+I
Sbjct: 181 SGFAI 185

[Close]

BLAST of Cla006296 vs. NCBI nr
Match: gi|823223791|ref|XP_012444646.1| (PREDICTED: protein slowmo homolog [Gossypium raimondii])

HSP 1 Score: 345.1 bits (884), Expect = 7.5e-92
Identity = 163/185 (88.11%), Postives = 177/185 (95.68%), Query Frame = 1


Query: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60
           MVKAY+QE+ YKHPWERVT ASWRKFADPENKRTLSHILEVDTLNRK+DP SGKLYTTRA
Sbjct: 1   MVKAYAQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKLDPLSGKLYTTRA 60

Query: 61  ITIHAPGPWFVRKIVGQDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120
           +TIHAPGPWFVRKIVGQDICHCVE+TVVDA+S+SMQL TRN+SLQKFIEV EKIRY+PHP
Sbjct: 61  LTIHAPGPWFVRKIVGQDICHCVESTVVDAQSKSMQLATRNVSLQKFIEVEEKIRYDPHP 120

Query: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180
           +NP GWTIC+QETSIRIKPLSALASMAEKVEQRCAERF+QNS KGREVMERICKYLEAES
Sbjct: 121 DNPTGWTICRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAES 180

Query: 181 SGFSI 186
           SG ++
Sbjct: 181 SGMAL 185

[Close]

BLAST of Cla006296 vs. NCBI nr
Match: gi|590583697|ref|XP_007014971.1| (MSF1-like family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 344.7 bits (883), Expect = 9.7e-92
Identity = 159/185 (85.95%), Postives = 179/185 (96.76%), Query Frame = 1


Query: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60
           MVK Y+Q++ YKHPWERVT ASWRKFADPENKRTLSHILEVDTLNR++DP+SG+LYTTRA
Sbjct: 1   MVKGYTQDHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRRLDPDSGRLYTTRA 60

Query: 61  ITIHAPGPWFVRKIVGQDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120
           +TIHAPGPWF+RKI+GQDICHCVE+TVVDA+S+SMQLTTRN+SLQKFIEV EKIRY+PHP
Sbjct: 61  LTIHAPGPWFIRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLQKFIEVEEKIRYDPHP 120

Query: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180
           +NP GWTIC+QETSIRIKPLSALASMAEKVEQRCAERF+QNSAKGREVMERICKYLEAES
Sbjct: 121 DNPTGWTICRQETSIRIKPLSALASMAEKVEQRCAERFMQNSAKGREVMERICKYLEAES 180

Query: 181 SGFSI 186
           SG ++
Sbjct: 181 SGMAL 185

[Close]

BLAST of Cla006296 vs. NCBI nr
Match: gi|747085808|ref|XP_011090380.1| (PREDICTED: protein slowmo homolog 1-like [Sesamum indicum])

HSP 1 Score: 343.6 bits (880), Expect = 2.2e-91
Identity = 160/185 (86.49%), Postives = 176/185 (95.14%), Query Frame = 1


Query: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60
           MV+AYSQE+TYKHPWERVT ASWRKFADPENKRTLSHILEVDTL+ +++P SGKLYTTRA
Sbjct: 1   MVRAYSQEHTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLSHRLEPSSGKLYTTRA 60

Query: 61  ITIHAPGPWFVRKIVGQDICHCVETTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120
           ITIHAPGPWF+RKI+GQDICHCVE+TVVDA+S+SMQL TRNISLQKF+EV EKIRYEPHP
Sbjct: 61  ITIHAPGPWFLRKIIGQDICHCVESTVVDAKSRSMQLATRNISLQKFVEVEEKIRYEPHP 120

Query: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180
           ENPNGWTIC+QETSIRIKPLSALASMAEK+EQRC E+F  NSAKGREVMERICKYLEAES
Sbjct: 121 ENPNGWTICRQETSIRIKPLSALASMAEKIEQRCVEKFQHNSAKGREVMERICKYLEAES 180

Query: 181 SGFSI 186
            GFS+
Sbjct: 181 RGFSV 185

The following BLAST results are available for this feature:

BLAST of Cla006296 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SLMO_DICDI	4.3e-23	35.58	Protein slowmo homolog OS=Dictyostelium discoideum GN=slmo PE=3 SV=1	[more]
PLD3B_MOUSE	2.2e-19	33.33	PRELI domain containing protein 3B OS=Mus musculus GN=Prelid3b PE=1 SV=2	[more]
UPS2_YEAST	6.4e-19	27.71	Protein UPS2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]
UPS2_SCHPO	8.4e-19	31.40	UPS-like protein C36.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...	[more]
PLD3B_PIG	4.2e-18	32.78	PRELI domain containing protein 3B OS=Sus scrofa GN=PRELID3B PE=3 SV=1	[more]

BLAST of Cla006296 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXA5_CUCSA	2.3e-100	97.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613520 PE=4 SV=1	[more]
A0A0D2TL46_GOSRA	5.2e-92	88.11	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G072300 PE=4 SV=1	[more]
A0A061GTV2_THECC	6.8e-92	85.95	MSF1-like family protein isoform 1 OS=Theobroma cacao GN=TCM_040594 PE=4 SV=1	[more]
W9RTE2_9ROSA	3.4e-91	87.03	Uncharacterized protein OS=Morus notabilis GN=L484_015260 PE=4 SV=1	[more]
M5W0C5_PRUPE	3.4e-91	86.96	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012045mg PE=4 SV=1	[more]

BLAST of Cla006296 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099113\|ref\|XP_008450435.1\|	5.2e-101	98.38	PREDICTED: protein slowmo homolog [Cucumis melo]	[more]
gi\|778663639\|ref\|XP_011660128.1\|	3.3e-100	97.30	PREDICTED: protein slowmo homolog [Cucumis sativus]	[more]
gi\|823223791\|ref\|XP_012444646.1\|	7.5e-92	88.11	PREDICTED: protein slowmo homolog [Gossypium raimondii]	[more]
gi\|590583697\|ref\|XP_007014971.1\|	9.7e-92	85.95	MSF1-like family protein isoform 1 [Theobroma cacao]	[more]
gi\|747085808\|ref\|XP_011090380.1\|	2.2e-91	86.49	PREDICTED: protein slowmo homolog 1-like [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006797	PRELI/MSF1_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015914	phospholipid transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0003674	molecular_function
molecular_function	GO:1990050	phosphatidic acid transporter activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU30934	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU75151	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006296	Cla006296.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU30934	WMU30934	transcribed_cluster
WMU75151	WMU75151	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006797	PRELI/MSF1 domain	PFAM	PF04707	PRELI	coord: 22..178 score: 1.2
IPR006797	PRELI/MSF1 domain	PROFILE	PS50904	PRELI_MSF1	coord: 2..181 score: 43
None	No IPR available	PANTHER	PTHR11158	MSF1/PX19 RELATED	coord: 2..185 score: 1.6
None	No IPR available	PANTHER	PTHR11158:SF17	PROTEIN SLOWMO HOMOLOG	coord: 2..185 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006296	Cla97C03G063510	Watermelon (97103) v2	wmwmbB125
Cla006296	Csa1G613520	Cucumber (Chinese Long) v2	cuwmB020
Cla006296	MELO3C015200	Melon (DHL92) v3.5.1	mewmB271
Cla006296	ClCG03G013300	Watermelon (Charleston Gray)	wcgwmB224
Cla006296	CSPI01G30300	Wild cucumber (PI 183967)	cpiwmB022
Cla006296	Cucsa.143320	Cucumber (Gy14) v1	cgywmB251
Cla006296	CmaCh10G009350	Cucurbita maxima (Rimu)	cmawmB046
Cla006296	CmaCh11G008410	Cucurbita maxima (Rimu)	cmawmB099
Cla006296	CmoCh10G009800	Cucurbita moschata (Rifu)	cmowmB037
Cla006296	CmoCh11G008520	Cucurbita moschata (Rifu)	cmowmB088
Cla006296	Lsi06G005200	Bottle gourd (USVL1VR-Ls)	lsiwmB396
Cla006296	Cp4.1LG18g01630	Cucurbita pepo (Zucchini)	cpewmB355
Cla006296	Cp4.1LG04g12110	Cucurbita pepo (Zucchini)	cpewmB642
Cla006296	CsGy1G029660	Cucumber (Gy14) v2	cgybwmB022
Cla006296	MELO3C015200.2	Melon (DHL92) v3.6.1	medwmB262
Cla006296	Carg17975	Silver-seed gourd	carwmB0163
Cla006296	Carg16947	Silver-seed gourd	carwmB0463
Cla006296	CsaV3_1G042730	Cucumber (Chinese Long) v3	cucwmB025
Cla006296	Bhi02G001348	Wax gourd	wgowmB660

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006296	Silver-seed gourd	carwmB0516
Cla006296	Silver-seed gourd	carwmB0919
Cla006296	Cucumber (Chinese Long) v3	cucwmB610
Cla006296	Watermelon (97103) v2	wmwmbB119
Cla006296	Wax gourd	wgowmB364
Cla006296	Wax gourd	wgowmB608
Cla006296	Wax gourd	wgowmB653
Cla006296	Watermelon (97103) v1	wmwmB088
Cla006296	Cucurbita maxima (Rimu)	cmawmB516
Cla006296	Cucurbita moschata (Rifu)	cmowmB506
Cla006296	Melon (DHL92) v3.5.1	mewmB224
Cla006296	Melon (DHL92) v3.5.1	mewmB403
Cla006296	Watermelon (Charleston Gray)	wcgwmB182
Cla006296	Bottle gourd (USVL1VR-Ls)	lsiwmB055
Cla006296	Cucumber (Gy14) v2	cgybwmB543
Cla006296	Melon (DHL92) v3.6.1	medwmB396