Carg17975 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17975
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	PRELI/MSF1 domain containing protein
Location	Cucurbita_argyrosperma_scaffold_171 : 88057 .. 90496 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACGAGACCTGAAAATGGAAGCTTTGGGGATTGGATTACCCATTACAGTTCGATGTCTCCGTCTTCAGCTGCAATGGCGATGGGCAATTTCGTCAGAAAACTACATCTCTATTTAACCACACCTCGGTCCTATGGAAATGGTCTTTCCTCTTCCTGAAGCTCTGATTTGCCGAAATTTTCTATATTTTTCTGTGAGTTTCTATTTTGAGATTGAGATCTTGACCTATCGGAACCGCCTTCTTCCGCCGTCTGCGAACTCCATCTTCTTTCATCTCTCAGGTGAACTTTTTCTATCTTTAGCTCTTTCTTTTACATGCGTTTTGATTCCATTTTGCTGGGCGCTTCCTTAGGGGTTTTGTTTTTCACCTTTATTTGCACTATCTGTTGGATTTCTGTGGGTTTGCTGTGGGATTGTGGTTGAGAAATGCTCATAAAATAGGTTAAATTCCAAACTAGCTGCTCTAGATGCCTGTGGAAAGTGACTCAGCTGTGTTTTTCATCTTTATCTTCAAATCCAAGGAAGAATTTGAGATTGTTGGGAATGGTTAAAACTAGCATATGTTTTGCTGCCAGTTCTTTTGATGGATCATTATTTGTAATGATGGGACTCTTTTCTTTTTTGCTTGCAAATGTTTGACCCGTAAGTATGTGTGTTGTGCTGATTGTGAACATTCATCGTTTCCCTTTTCCTACTTTAGCTTTTGTTTTAACCGTTGTTGAAGATCGTTGGGAGAGGAGTCTCACATCTGCCAATTAAGGGATTGATCATGAGTTTATAAGTAATGAGTACATCTCCATTGGAATGAGGTCTTTTGGGAAAACCAAAAGTAAAGCCATGAGAGCGTATACTAAAAATTGACAATATCATACTATTGTGGAGGTCTGTTGTTCCTTACATGGTATCAGATCCATGCCCTTAACTTAACCATGTCAATAGAATCCTCAAATGTTGAACAAAGATGTTGTGAGCCTTGAAGGTGTAGTCAAAAGTGACTTAACTGTCGAACAAAGGGTGTACTTTGTTTAAGGGTTCTAGAGAAGGAGTCGAACCTCTATTAAGGAGAGGCTCTATGGTGTACTTTGTTCGAATGGAGGATTGTTGAGGATTATTGGGAAAGGAGTCTCACATCAGCTAATTAAGAGGTTAATCCTGAGTTTATAAGGAACACATCTCCATTGGAATGTAGCCTTTTGGGAAACCAAAATTAAAGCCATGAAAACTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGTCCGTGGTTTCCAACACTAAATTGATAAAGTTACGATATATTTGCACAAGCCCAACAAACAACGATCAATATTGATTTGGGAGAAAATGACGTTAATAGGAGTTCTAGTTGTATGATACCACGTTAAAATCACAAAATTTTGAAGTTCAAACTGATGGATTGCAATATATTTAGTTTATTCTGCATATTCTTACATTATGATCTAGAATATATTCATTCTCTAAATAACTTGAATGTATTTATTGAACAATAGGTGAAAGAACTGCAGGATTGTTGGAGAGAAAATTTGTTCTTGTGAATGAACTATTATGAATTATGGAGAACTCCTGGGTTGGGCAGGACCTATTGACTTGATAAAACGAACTTTTTACTGTTCCTTATCTGATTTGATGTATGTATGTGTGATGCTCAGGATATCTGAGAATAGTGTGATGGTTAAAGCATACGCTCAGGAGTACACGTACGAGCACCCGTGGGAACGGGTAACTTCTGCATCTTGGCGTAAATTTGTGGACTCTGAAAACAGGCGTACGTTGTCCCATATTCTTGAAGTCGACACCTTAAACAGAAAGGTTGACACTGAATCTGGGAGGCTATATACAACCCGTGCTATTACCATCCATGCGCCTGGACCATGGTTTGTTCGTAAAATTGTTGGTCAAGATACCTGCCATTGTGTCGAATCCACGGTTGTAGATGCTCGGTCACGCTCGATGCAACTGACCACTCAGAATATTAGCTTTCAGAAGTTCATAGAAGTGGTGGAGAAGATTAGATATGAACCTCACCCTGATAATCCAAACGGATGGACAATGTGCAGACAGGAGACGAGTATTCGTATCAAGCCGTTGTCAGCGTTGGCGTCGATGGCCGAAAAAGTGGAGCAACGGTGTGCTGAGAGGTTCATGCAAAACAGTGTGAAGGGTAGAGAAGTGATGGAGAGGATTTGTAAGTATCTTGAAGCTGGATCTAGCGGACTCACTGTCTAGCTTTTGCTTCCTCTCATTGATTATGTACTGGTTCTTCAAAGGGGTCAGTGAGATCATGGTCTGTTTTCCAAGCTGTTTTTAACGAAATAATTCTCATGGAGAGAAACGTGTTTACTGGCTTTCCCTCCGGGCTTCCTCTCATTCCCTTCAAGGTTTTAAAATGCATCTGCCAATGAGAGGTTTCTAT

mRNA sequence

ATGCAAACGAGACCTGAAAATGGAAGCTTTGGGGATTGGATTACCCATTACAGTTCGATGTCTCCGTCTTCAGCTGCAATGGCGATGGGCAATTTCGTCAGAAAACTACATCTCTATTTAACCACACCTCGGTCCTATGGAAATGATCTTGACCTATCGGAACCGCCTTCTTCCGCCGTCTGCGAACTCCATCTTCTTTCATCTCTCAGGATATCTGAGAATAGTGTGATGGTTAAAGCATACGCTCAGGAGTACACGTACGAGCACCCGTGGGAACGGGTAACTTCTGCATCTTGGCGTAAATTTGTGGACTCTGAAAACAGGCGTACGTTGTCCCATATTCTTGAAGTCGACACCTTAAACAGAAAGGTTGACACTGAATCTGGGAGGCTATATACAACCCGTGCTATTACCATCCATGCGCCTGGACCATGGTTTGTTCGTAAAATTGTTGGTCAAGATACCTGCCATTGTGTCGAATCCACGGTTGTAGATGCTCGGTCACGCTCGATGCAACTGACCACTCAGAATATTAGCTTTCAGAAGTTCATAGAAGTGGTGGAGAAGATTAGATATGAACCTCACCCTGATAATCCAAACGGATGGACAATGTGCAGACAGGAGACGAGTATTCGTATCAAGCCGTTGTCAGCGTTGGCGTCGATGGCCGAAAAAGTGGAGCAACGGTGTGCTGAGAGGTTCATGCAAAACAGTGTGAAGGGTAGAGAAGTGATGGAGAGGATTTGTAAGTATCTTGAAGCTGGATCTAGCGGACTCACTGTCTAGCTTTTGCTTCCTCTCATTGATTATGTACTGGTTCTTCAAAGGGGTCAGTGAGATCATGGTCTGTTTTCCAAGCTGTTTTTAACGAAATAATTCTCATGGAGAGAAACGTGTTTACTGGCTTTCCCTCCGGGCTTCCTCTCATTCCCTTCAAGGTTTTAAAATGCATCTGCCAATGAGAGGTTTCTAT

Coding sequence (CDS)

ATGCAAACGAGACCTGAAAATGGAAGCTTTGGGGATTGGATTACCCATTACAGTTCGATGTCTCCGTCTTCAGCTGCAATGGCGATGGGCAATTTCGTCAGAAAACTACATCTCTATTTAACCACACCTCGGTCCTATGGAAATGATCTTGACCTATCGGAACCGCCTTCTTCCGCCGTCTGCGAACTCCATCTTCTTTCATCTCTCAGGATATCTGAGAATAGTGTGATGGTTAAAGCATACGCTCAGGAGTACACGTACGAGCACCCGTGGGAACGGGTAACTTCTGCATCTTGGCGTAAATTTGTGGACTCTGAAAACAGGCGTACGTTGTCCCATATTCTTGAAGTCGACACCTTAAACAGAAAGGTTGACACTGAATCTGGGAGGCTATATACAACCCGTGCTATTACCATCCATGCGCCTGGACCATGGTTTGTTCGTAAAATTGTTGGTCAAGATACCTGCCATTGTGTCGAATCCACGGTTGTAGATGCTCGGTCACGCTCGATGCAACTGACCACTCAGAATATTAGCTTTCAGAAGTTCATAGAAGTGGTGGAGAAGATTAGATATGAACCTCACCCTGATAATCCAAACGGATGGACAATGTGCAGACAGGAGACGAGTATTCGTATCAAGCCGTTGTCAGCGTTGGCGTCGATGGCCGAAAAAGTGGAGCAACGGTGTGCTGAGAGGTTCATGCAAAACAGTGTGAAGGGTAGAGAAGTGATGGAGAGGATTTGTAAGTATCTTGAAGCTGGATCTAGCGGACTCACTGTCTAG

Protein sequence

MQTRPENGSFGDWITHYSSMSPSSAAMAMGNFVRKLHLYLTTPRSYGNDLDLSEPPSSAVCELHLLSSLRISENSVMVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRAITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHPDNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGSSGLTV

Homology

[Close]

BLAST of Carg17975 vs. NCBI nr
Match: XP_022927894.1 (protein slowmo homolog [Cucurbita moschata])

HSP 1 Score: 379.8 bits (974), Expect = 7.5e-102
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA
Sbjct: 1   MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS
Sbjct: 121 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 180

Query: 257 SGLTV 262
           SGLTV
Sbjct: 181 SGLTV 185

[Close]

BLAST of Carg17975 vs. NCBI nr
Match: XP_023531860.1 (protein slowmo homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 376.3 bits (965), Expect = 8.3e-101
Identity = 183/185 (98.92%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVD ESG+LYTTRA
Sbjct: 1   MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDIESGKLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS
Sbjct: 121 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 180

Query: 257 SGLTV 262
           SGLTV
Sbjct: 181 SGLTV 185

[Close]

BLAST of Carg17975 vs. NCBI nr
Match: XP_022960775.1 (protein slowmo homolog [Cucurbita moschata] >XP_022988219.1 protein slowmo homolog [Cucurbita maxima] >XP_023516290.1 protein slowmo homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 347.1 bits (889), Expect = 5.4e-92
Identity = 165/185 (89.19%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MV+AY+QEYTY+HPWERVT ASWRKF D EN+RTLSHILEVDTLNRKVD ESG+LYTTRA
Sbjct: 1   MVRAYSQEYTYKHPWERVTCASWRKFTDPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWF+RKIVGQD CHCVESTVVDA S+SMQLTT+NIS QKFIEVVEKIRY+PHP
Sbjct: 61  ITIHAPGPWFIRKIVGQDICHCVESTVVDAWSQSMQLTTRNISLQKFIEVVEKIRYDPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           DNPNGWT+CRQETSIRIKPLSALASMAEKVEQRCAERF+QNSVKGREVMERICKYLEA S
Sbjct: 121 DNPNGWTICRQETSIRIKPLSALASMAEKVEQRCAERFVQNSVKGREVMERICKYLEAES 180

Query: 257 SGLTV 262
           SGLT+
Sbjct: 181 SGLTI 185

[Close]

BLAST of Carg17975 vs. NCBI nr
Match: XP_008450435.1 (PREDICTED: protein slowmo homolog [Cucumis melo])

HSP 1 Score: 345.5 bits (885), Expect = 1.6e-91
Identity = 164/185 (88.65%), Postives = 175/185 (94.59%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAY+QEYTY+HPWERVT ASWRKF D EN+RTLSHILEVDTLNRKVD ESG+LYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWFVRKIVGQD CHCVESTVVDARS+SMQLTT+NIS QKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           +NPNGWT+C+QETSIRIKPLSALASMAEKVEQRCAERF+QNS KGREVMERICKYLEA S
Sbjct: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180

Query: 257 SGLTV 262
           SG  +
Sbjct: 181 SGFAI 185

[Close]

BLAST of Carg17975 vs. NCBI nr
Match: XP_011660128.1 (PREDICTED: protein slowmo homolog [Cucumis sativus] >XP_011660129.1 PREDICTED: protein slowmo homolog [Cucumis sativus] >XP_011660130.1 PREDICTED: protein slowmo homolog [Cucumis sativus] >XP_011660131.1 PREDICTED: protein slowmo homolog [Cucumis sativus] >KGN66480.1 hypothetical protein Csa_1G613520 [Cucumis sativus])

HSP 1 Score: 342.8 bits (878), Expect = 1.0e-90
Identity = 162/185 (87.57%), Postives = 175/185 (94.59%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAY+QEYTY+HPWERVT ASWRKF D EN+RTLSHILEVDTLNRKVD ESG+LYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWFVRKIVGQD CHCVESTVVDARS+SMQLTT+NIS QKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           +NPNGWT+C+QETSI+IKPLSALASMAEKVEQRCAE+F+QNS KGREVMERICKYLEA S
Sbjct: 121 ENPNGWTICKQETSIQIKPLSALASMAEKVEQRCAEKFVQNSAKGREVMERICKYLEAES 180

Query: 257 SGLTV 262
           SG  +
Sbjct: 181 SGFAI 185

[Close]

BLAST of Carg17975 vs. TAIR10
Match: AT5G13070.1 (MSF1-like family protein)

HSP 1 Score: 312.4 bits (799), Expect = 2.7e-85
Identity = 143/181 (79.01%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAY QE+ Y+HPWERV++ASWRKF D EN+R LSHILEVDTLNRK+DTE+G+L+TTRA
Sbjct: 1   MVKAYRQEHVYKHPWERVSAASWRKFADPENKRILSHILEVDTLNRKLDTETGKLHTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           +TIHAPGPWF+ +I+GQD CHCVESTVVD +SRSMQLTT+NIS +KFIEV E+IRY+PHP
Sbjct: 61  LTIHAPGPWFLHRIIGQDICHCVESTVVDGKSRSMQLTTKNISLKKFIEVEERIRYDPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           DNP+ WT+C QETSIRIKPLSALASMAEKVEQ+CAE+FMQNS KGREVMERICKY+EA S
Sbjct: 121 DNPSAWTVCSQETSIRIKPLSALASMAEKVEQKCAEKFMQNSAKGREVMERICKYMEAES 180

Query: 257 S 258
           +
Sbjct: 181 A 181

[Close]

BLAST of Carg17975 vs. Swiss-Prot
Match: sp|Q54G07|SLMO_DICDI (Protein slowmo homolog OS=Dictyostelium discoideum OX=44689 GN=slmo PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-21
Identity = 56/163 (34.36%), Postives = 93/163 (57.06%), Query Frame = 0


Query: 84  EYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRAITIHAPG 143
           ++TY+H W   ++AS+RK+   E       IL +D L++++D  +G L  T+ I      
Sbjct: 8   KHTYKHLWSDASTASFRKYPSPER----PDILSIDILSKEIDPTTGVLKCTKLIICKGNT 67

Query: 144 PWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHPDNPNGWT 203
           P +++ I+G   C   E T VD +++ M L T+N++F   + V E   YE HPDN   WT
Sbjct: 68  PSWLKSILGSGECLFYEETTVDPKNKIMTLKTKNLNFTNILGVDEVCTYEQHPDNEE-WT 127

Query: 204 MCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVME 247
           +  QE ++     S++  +A K+E  C +RF+ N+ KGR++ME
Sbjct: 128 LFTQEATV----TSSIFGVARKMEAFCLDRFVANAGKGRKIME 161

[Close]

BLAST of Carg17975 vs. Swiss-Prot
Match: sp|Q04006|UPS3_YEAST (Protein UPS3, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UPS3 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.4e-20
Identity = 55/168 (32.74%), Postives = 97/168 (57.74%), Query Frame = 0


Query: 78  VKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRAI 137
           +K++ + Y +++PWE+VT+A+W K+ +    +  +H++ VD L R++      L T R I
Sbjct: 1   MKSFQKSYEFDYPWEKVTTANWMKYPN----KISTHVIAVDVLRRELKEHGDVLLTERLI 60

Query: 138 TIHAPGPWFVRKIVGQ-DTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 197
           TI    P ++  +VG  +  +  E + VD R RS+ + + N++F   ++  E +RY PHP
Sbjct: 61  TIRQNTPHWMSILVGNTNLAYVREVSTVDRRDRSLTMRSCNMTFPHILKCYETVRYVPHP 120

Query: 198 DNPNGWTMCRQETSIRIKPLSAL--ASMAEKVEQRCAERFMQNSVKGR 243
            NP+  T+ +Q+     K LS +   + +EKVE    +RF  N+VKG+
Sbjct: 121 KNPSNVTLFKQDA----KFLSGVPTKTFSEKVENWGVKRFSDNAVKGK 160

[Close]

BLAST of Carg17975 vs. Swiss-Prot
Match: sp|O59707|UPS2_SCHPO (UPS-like protein C36.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC36.10 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.4e-19
Identity = 54/172 (31.40%), Postives = 101/172 (58.72%), Query Frame = 0


Query: 78  VKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRAI 137
           +K +   + +++P+E+V++A W+K+ +       +H++ VDTL+RKV  ++G LYT R I
Sbjct: 1   MKIFESCHLFQYPFEQVSAAHWQKYPNEH----ATHVIAVDTLDRKV-LDNGVLYTERLI 60

Query: 138 TIHAPGP-WFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 197
           T H   P W ++ I G   C+  E++ VD ++R++ L T N++F   + V E + Y PHP
Sbjct: 61  TCHQALPRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDETVTYSPHP 120

Query: 198 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERI 249
           +     T+ +QE   RI+ L+ +  ++  +EQ   + F + + +G+E  E +
Sbjct: 121 ELEA--TVFQQEA--RIEALACMKRLSNLIEQWSVDGFGKKASRGKEGFESV 163

[Close]

BLAST of Carg17975 vs. Swiss-Prot
Match: sp|Q4R5S9|PLD3B_MACFA (PRELI domain containing protein 3B OS=Macaca fascicularis OX=9541 GN=PRELID3B PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-18
Identity = 59/185 (31.89%), Postives = 102/185 (55.14%), Query Frame = 0


Query: 78  VKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRAI 137
           +K +  E+ ++HPWE VT+A+ +K+ +  N      ++ VD L+R +D  SG+L++ R +
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMN----PSVVGVDVLDRHID-PSGKLHSHRLL 60

Query: 138 TIHAPGPWFVRKIVG--QDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPH 197
           +     P  V+ ++G  +   +  E +VVD   ++M+L + NISF   + V E++ Y+PH
Sbjct: 61  STEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPH 120

Query: 198 PDNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAG 257
           P +P+  T+  QE  I +K +    S++  +E   A     N+ KGRE ME +   L A 
Sbjct: 121 PQDPDK-TILTQEAIITVKGV----SLSSYLEGLMASTISSNASKGREAMEWVIHKLNAE 175

Query: 258 SSGLT 261
              LT
Sbjct: 181 IEELT 175

[Close]

BLAST of Carg17975 vs. Swiss-Prot
Match: sp|Q58DB0|PLD3B_BOVIN (PRELI domain containing protein 3B OS=Bos taurus OX=9913 GN=PRELID3B PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-18
Identity = 60/185 (32.43%), Postives = 100/185 (54.05%), Query Frame = 0


Query: 78  VKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRAI 137
           +K +  E+ ++HPWE VT+A+ +K+ +  N      ++ VD L+R +D  SG+L++ R +
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMN----PSVVGVDVLDRHID-PSGKLHSHRLL 60

Query: 138 TIHAPGPWFVRKIVG--QDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPH 197
           +     P  V+ I+G  +   +  E +VVD   ++M+L + NISF   + V E++ Y+PH
Sbjct: 61  STEWGLPSIVKSIIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPH 120

Query: 198 PDNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAG 257
           P +P   T+  QE  I +K +    S+   +E   A     N+ KGRE ME +   L A 
Sbjct: 121 PQDPEK-TILTQEAIITVKGV----SLGSYLEGLMASTISSNANKGREAMEWVIHKLNAE 175

Query: 258 SSGLT 261
              LT
Sbjct: 181 IEELT 175

[Close]

BLAST of Carg17975 vs. TrEMBL
Match: tr|A0A1S3BPV8|A0A1S3BPV8_CUCME (protein slowmo homolog OS=Cucumis melo OX=3656 GN=LOC103492037 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.0e-91
Identity = 164/185 (88.65%), Postives = 175/185 (94.59%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAY+QEYTY+HPWERVT ASWRKF D EN+RTLSHILEVDTLNRKVD ESG+LYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWFVRKIVGQD CHCVESTVVDARS+SMQLTT+NIS QKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           +NPNGWT+C+QETSIRIKPLSALASMAEKVEQRCAERF+QNS KGREVMERICKYLEA S
Sbjct: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180

Query: 257 SGLTV 262
           SG  +
Sbjct: 181 SGFAI 185

[Close]

BLAST of Carg17975 vs. TrEMBL
Match: tr|A0A0A0LXA5|A0A0A0LXA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613520 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 6.7e-91
Identity = 162/185 (87.57%), Postives = 175/185 (94.59%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAY+QEYTY+HPWERVT ASWRKF D EN+RTLSHILEVDTLNRKVD ESG+LYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWFVRKIVGQD CHCVESTVVDARS+SMQLTT+NIS QKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           +NPNGWT+C+QETSI+IKPLSALASMAEKVEQRCAE+F+QNS KGREVMERICKYLEA S
Sbjct: 121 ENPNGWTICKQETSIQIKPLSALASMAEKVEQRCAEKFVQNSAKGREVMERICKYLEAES 180

Query: 257 SGLTV 262
           SG  +
Sbjct: 181 SGFAI 185

[Close]

BLAST of Carg17975 vs. TrEMBL
Match: tr|A0A2P5X0V7|A0A2P5X0V7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA23721 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 3.7e-89
Identity = 159/186 (85.48%), Postives = 174/186 (93.55%), Query Frame = 0


Query: 76  VMVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTR 135
           VMVKAYAQE+ Y+HPWERVTSASWRKF D EN+RTLSHILEVDTLNRK+D  SG+LYTTR
Sbjct: 10  VMVKAYAQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKLDPLSGKLYTTR 69

Query: 136 AITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPH 195
           A+TIHAPGPWFVRKI+GQD CHCVESTVVDA+S+SMQLTT+N+S QKFIEV EKIRY+PH
Sbjct: 70  ALTIHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLQKFIEVEEKIRYDPH 129

Query: 196 PDNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAG 255
           PDNP GWT+CRQETSIRIKPLS LASMAEKVEQRCAERFMQNSVKGREVMERICKYLEA 
Sbjct: 130 PDNPTGWTICRQETSIRIKPLSTLASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAE 189

Query: 256 SSGLTV 262
           SSG+ +
Sbjct: 190 SSGMAL 195

[Close]

BLAST of Carg17975 vs. TrEMBL
Match: tr|A0A0D2TL46|A0A0D2TL46_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G072300 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.1e-88
Identity = 159/185 (85.95%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAYAQE+ Y+HPWERVTSASWRKF D EN+RTLSHILEVDTLNRK+D  SG+LYTTRA
Sbjct: 1   MVKAYAQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKLDPLSGKLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           +TIHAPGPWFVRKIVGQD CHCVESTVVDA+S+SMQL T+N+S QKFIEV EKIRY+PHP
Sbjct: 61  LTIHAPGPWFVRKIVGQDICHCVESTVVDAQSKSMQLATRNVSLQKFIEVEEKIRYDPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           DNP GWT+CRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEA S
Sbjct: 121 DNPTGWTICRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAES 180

Query: 257 SGLTV 262
           SG+ +
Sbjct: 181 SGMAL 185

[Close]

BLAST of Carg17975 vs. TrEMBL
Match: tr|A0A2P5R6D8|A0A2P5R6D8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20710 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.4e-88
Identity = 158/185 (85.41%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAYAQE+ Y+HPWERVTSASWRKF D EN+RTLSHILEVDTLNRK+D  SG+LYTTRA
Sbjct: 1   MVKAYAQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKLDPLSGKLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           +TIHAPGPWFVRKI+GQD CHCVESTVVDA+S+SMQL T+N+S QKFIEV EKIRY+PHP
Sbjct: 61  LTIHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLATRNVSLQKFIEVEEKIRYDPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           DNP GWT+CRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEA S
Sbjct: 121 DNPTGWTICRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAES 180

Query: 257 SGLTV 262
           SG+ +
Sbjct: 181 SGMAL 185

The following BLAST results are available for this feature:

BLAST of Carg17975 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927894.1	7.5e-102	100.00	protein slowmo homolog [Cucurbita moschata]	[more]
XP_023531860.1	8.3e-101	98.92	protein slowmo homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022960775.1	5.4e-92	89.19	protein slowmo homolog [Cucurbita moschata] >XP_022988219.1 protein slowmo homol...	[more]
XP_008450435.1	1.6e-91	88.65	PREDICTED: protein slowmo homolog [Cucumis melo]	[more]
XP_011660128.1	1.0e-90	87.57	PREDICTED: protein slowmo homolog [Cucumis sativus] >XP_011660129.1 PREDICTED: p...	[more]

BLAST of Carg17975 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13070.1	2.7e-85	79.01	MSF1-like family protein	[more]

BLAST of Carg17975 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q54G07\|SLMO_DICDI	2.0e-21	34.36	Protein slowmo homolog OS=Dictyostelium discoideum OX=44689 GN=slmo PE=3 SV=1	[more]
sp\|Q04006\|UPS3_YEAST	6.4e-20	32.74	Protein UPS3, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]
sp\|O59707\|UPS2_SCHPO	5.4e-19	31.40	UPS-like protein C36.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) O...	[more]
sp\|Q4R5S9\|PLD3B_MACFA	1.2e-18	31.89	PRELI domain containing protein 3B OS=Macaca fascicularis OX=9541 GN=PRELID3B PE...	[more]
sp\|Q58DB0\|PLD3B_BOVIN	1.6e-18	32.43	PRELI domain containing protein 3B OS=Bos taurus OX=9913 GN=PRELID3B PE=2 SV=1	[more]

BLAST of Carg17975 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BPV8\|A0A1S3BPV8_CUCME	1.0e-91	88.65	protein slowmo homolog OS=Cucumis melo OX=3656 GN=LOC103492037 PE=4 SV=1	[more]
tr\|A0A0A0LXA5\|A0A0A0LXA5_CUCSA	6.7e-91	87.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613520 PE=4 SV=1	[more]
tr\|A0A2P5X0V7\|A0A2P5X0V7_GOSBA	3.7e-89	85.48	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA23721 PE=4 SV...	[more]
tr\|A0A0D2TL46\|A0A0D2TL46_GOSRA	1.1e-88	85.95	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G072300 PE=4 ...	[more]
tr\|A0A2P5R6D8\|A0A2P5R6D8_GOSBA	1.4e-88	85.41	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20710 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005758	mitochondrial intermembrane space

Vocabulary: **INTERPRO**
Term	Definition
IPR037365	Slowmo/Ups
IPR006797	PRELI/MSF1_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17975-RA	Carg17975-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006797	PRELI/MSF1 domain	PFAM	PF04707	PRELI	coord: 92..253 e-value: 3.8E-48 score: 163.2
IPR006797	PRELI/MSF1 domain	PROSITE	PS50904	PRELI_MSF1	coord: 78..257 score: 41.185
IPR037365	Slowmo/Ups family	PANTHER	PTHR11158	MSF1/PX19 RELATED	coord: 77..256
None	No IPR available	PANTHER	PTHR11158:SF17	PROTEIN SLOWMO	coord: 77..256

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17975	Cla006296	Watermelon (97103) v1	carwmB0163
Carg17975	Csa1G613520	Cucumber (Chinese Long) v2	carcuB0192
Carg17975	MELO3C015200	Melon (DHL92) v3.5.1	carmeB0178
Carg17975	ClCG03G013300	Watermelon (Charleston Gray)	carwcgB0165
Carg17975	CSPI01G30300	Wild cucumber (PI 183967)	carcpiB0199
Carg17975	Cucsa.143320	Cucumber (Gy14) v1	carcgyB0212
Carg17975	CmaCh11G008410	Cucurbita maxima (Rimu)	carcmaB0231
Carg17975	CmaCh10G009350	Cucurbita maxima (Rimu)	carcmaB0230
Carg17975	CmoCh11G008520	Cucurbita moschata (Rifu)	carcmoB0241
Carg17975	CmoCh10G009800	Cucurbita moschata (Rifu)	carcmoB0240
Carg17975	Lsi06G005200	Bottle gourd (USVL1VR-Ls)	carlsiB155
Carg17975	Cp4.1LG18g01630	Cucurbita pepo (Zucchini)	carcpeB0247
Carg17975	Cp4.1LG04g12110	Cucurbita pepo (Zucchini)	carcpeB0248
Carg17975	CsGy1G029660	Cucumber (Gy14) v2	carcgybB0186
Carg17975	MELO3C015200.2	Melon (DHL92) v3.6.1	carmedB0182
Carg17975	CsaV3_1G042730	Cucumber (Chinese Long) v3	carcucB0199
Carg17975	Cla97C03G063510	Watermelon (97103) v2	carwmbB0178
Carg17975	Bhi02G001348	Wax gourd	carwgoB0223

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17975	Carg16947	Silver-seed gourd	carcarB208

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17975	Silver-seed gourd	carcarB207
Carg17975	Silver-seed gourd	carcarB209
Carg17975	Silver-seed gourd	carcarB210
Carg17975	Cucurbita maxima (Rimu)	carcmaB0232
Carg17975	Cucurbita maxima (Rimu)	carcmaB0233
Carg17975	Cucurbita moschata (Rifu)	carcmoB0242
Carg17975	Cucurbita pepo (Zucchini)	carcpeB0246
Carg17975	Cucurbita pepo (Zucchini)	carcpeB0249
Carg17975	Wax gourd	carwgoB0221