Cla006230 (gene) Watermelon (97103) v1

Overview
NameCla006230
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTranscription factor bHLH126 (AHRD V1 ***- BH126_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH
LocationChr5 : 7777673 .. 7778372 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTCTTCTCATCAACCTCCGATCTTTGCTTCCTCTTGAATTTATAAAGGTAATGTAAATTAAAAAAAGAAAAAAAAAAGAAAAAGAAAAGAAATCATCTTTTTGCTTCATTTACCTTGTCTTTTTTTCGATTATATTTATGCAATTATTTTAAACCTTGGATGTTGTGGGGATTTTAGGGTAGGCGTACGAGGGCTGATATTGTTGATGAGGCTGTGAATTATATTGAACATTTAAGAGGGAAAATCAGTGAACTTCATGTTAAAAGAGATGCAACAATAAAGAGGCTGAATTTGGAATCCTCAAGTTGCAACAATCAAAGATGCAATCTTGCGTCTCCATGTTGTGTTGTAATTAAGCCATATTCAGGTGGGTTGGAGATTGCAATAAGTAATTGCATTACAGAGGAAAATTTTCAACTTTCAGGAGTGATGAGGGTTTTGCTTGAACACAACATTCAAATTGAAAGTTGTGCTTCTACTAAAGTAAATGATCAAAGGATGTTGCACACCGTTCAGACAAAGGTTGTTGCTTGATTGGAGGATTTGGATCTTTTTATTATTATTATTATTTTTTATTTTAGAGGGTGATTTTATCTTATGTTGATTGATTTTGTTTTTCAGGTTGATGATTCAATCAAGATTGATCTGCATGAACTGGAACAAAAACTATATGAAGTTTGCAATTCTGAGTGA

mRNA sequence

ATGGCCTCTCTTCTCATCAACCTCCGATCTTTGCTTCCTCTTGAATTTATAAAGGGTAGGCGTACGAGGGCTGATATTGTTGATGAGGCTGTGAATTATATTGAACATTTAAGAGGGAAAATCAGTGAACTTCATGTTAAAAGAGATGCAACAATAAAGAGGCTGAATTTGGAATCCTCAAGTTGCAACAATCAAAGATGCAATCTTGCGTCTCCATGTTGTGTTGTAATTAAGCCATATTCAGGTGGGTTGGAGATTGCAATAAGTAATTGCATTACAGAGGAAAATTTTCAACTTTCAGGAGTGATGAGGGTTTTGCTTGAACACAACATTCAAATTGAAAGTTGTGCTTCTACTAAAGTAAATGATCAAAGGATGTTGCACACCGTTCAGACAAAGGTTGATGATTCAATCAAGATTGATCTGCATGAACTGGAACAAAAACTATATGAAGTTTGCAATTCTGAGTGA

Coding sequence (CDS)

ATGGCCTCTCTTCTCATCAACCTCCGATCTTTGCTTCCTCTTGAATTTATAAAGGGTAGGCGTACGAGGGCTGATATTGTTGATGAGGCTGTGAATTATATTGAACATTTAAGAGGGAAAATCAGTGAACTTCATGTTAAAAGAGATGCAACAATAAAGAGGCTGAATTTGGAATCCTCAAGTTGCAACAATCAAAGATGCAATCTTGCGTCTCCATGTTGTGTTGTAATTAAGCCATATTCAGGTGGGTTGGAGATTGCAATAAGTAATTGCATTACAGAGGAAAATTTTCAACTTTCAGGAGTGATGAGGGTTTTGCTTGAACACAACATTCAAATTGAAAGTTGTGCTTCTACTAAAGTAAATGATCAAAGGATGTTGCACACCGTTCAGACAAAGGTTGATGATTCAATCAAGATTGATCTGCATGAACTGGAACAAAAACTATATGAAGTTTGCAATTCTGAGTGA

Protein sequence

MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLESSSCNNQRCNLASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESCASTKVNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCNSE
Homology
[Close]
BLAST of Cla006230 vs. Swiss-Prot
Match: BH118_ARATH (Transcription factor bHLH118 OS=Arabidopsis thaliana GN=BHLH118 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.1e-19
Identity = 62/149 (41.61%), Postives = 87/149 (58.39%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLESS 60
           MASL  +LRSLLPLEFI+G+R+ +D V  AVNYI++L+  I +++ KRD  +        
Sbjct: 17  MASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDINSKRDDLVLLSGRSFR 76

Query: 61  SCNNQRCNLASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESCASTK 120
           S N Q  N  S   VVI+P   G+EI +S   T      S V++VL EH + +     + 
Sbjct: 77  SSNEQEWNEISN-HVVIRPCLVGIEIVLSILQT----PFSSVLQVLREHGLYVLGYICSS 136

Query: 121 VNDQRMLHTVQTKVDDSIKIDLHELEQKL 150
           VND R++HT+Q +V+D   IDL +L+  L
Sbjct: 137 VND-RLIHTLQAEVNDLALIDLADLKDTL 159

[Close]
BLAST of Cla006230 vs. Swiss-Prot
Match: BH036_ARATH (Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-17
Identity = 62/155 (40.00%), Postives = 100/155 (64.52%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRD--ATIKRLNLE 60
           MASL  +LRSLLPL FIKG+R+ +D V+EAVNYI++L+ KI EL V+RD    + R +L 
Sbjct: 17  MASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELSVRRDDLMVLSRGSLL 76

Query: 61  SSSCNNQRCN---LASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIES 120
            SS  + + +   ++    VV++    G+EI +S+       + S V++VL E+ + + +
Sbjct: 77  GSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFSSVLQVLSEYGLCLLN 136

Query: 121 CASTKVNDQRMLHTVQTKVDD-SIKIDLHELEQKL 150
             S+ V+D R+++T+Q +V+D ++ IDL ELE++L
Sbjct: 137 SISSIVDD-RLVYTIQAEVNDMALMIDLAELEKRL 170

[Close]
BLAST of Cla006230 vs. Swiss-Prot
Match: BH055_ARATH (Transcription factor bHLH55 OS=Arabidopsis thaliana GN=BHLH55 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.9e-17
Identity = 62/163 (38.04%), Postives = 93/163 (57.06%), Query Frame = 1 

Query: 3   SLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLESSSC 62
           SL   LR LLP ++IKG+R+ AD V EAVNYI+ L+ KI E+  KRD   + +   SS  
Sbjct: 92  SLFKILRYLLPSQYIKGKRSSADHVLEAVNYIKDLQKKIKEVSEKRDRIKRSITHPSSRG 151

Query: 63  NNQRCNLASPCC---------VVIKPYSGGLEIAISNCITEENFQLSGVMRVLL-EHNIQ 122
                +LAS  C         VV++P   GLEI +S C   E+  LS V+++L  E    
Sbjct: 152 EFSIRSLASSTCSCVGDTNIAVVVRPCLIGLEIVVSCCNRHESC-LSSVLQLLAQEQCFN 211

Query: 123 IESCASTKVNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCNS 156
           I SC ST+++ Q  +HT+ ++V++ I++   EL++K+ ++  S
Sbjct: 212 IVSCISTRLH-QGFIHTIASEVEEGIEVYFSELQEKIIKIGTS 252

[Close]
BLAST of Cla006230 vs. Swiss-Prot
Match: BH126_ARATH (Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-16
Identity = 55/157 (35.03%), Postives = 85/157 (54.14%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLESS 60
           MA+L   LR+ LPL++IKG+R  +D V+ AVN+I+    +I EL  +RD   +       
Sbjct: 58  MATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKDTEARIKELSARRDELSRETGQGYK 117

Query: 61  S-----CNNQRCNLASPCCVVIKPYSGGLEIAI-SNCITEENFQLSGVMRVLLEHNIQIE 120
           S             + P  V+++P+  GLE+ + SN    E   LS V+  + E  +++ 
Sbjct: 118 SNPDPGKTGSDVGKSEPATVMVQPHVSGLEVVVSSNSSGPEALPLSKVLETIQEKGLEVM 177

Query: 121 SCASTKVNDQRMLHTVQTKVDDSIKIDLHELEQKLYE 152
           S  +T+VND R++HT+Q +V+    IDL  L+QKL E
Sbjct: 178 SSFTTRVND-RLMHTIQVEVNSFGCIDLLWLQQKLVE 213

[Close]
BLAST of Cla006230 vs. Swiss-Prot
Match: BH125_ARATH (Transcription factor bHLH125 OS=Arabidopsis thaliana GN=BHLH125 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-15
Identity = 56/169 (33.14%), Postives = 92/169 (54.44%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLN---- 60
           ++SL   LR+LLP ++I+G+R+ +D + +AVNYI+ L+ KI EL+ KR+   K ++    
Sbjct: 89  VSSLFKRLRTLLPFQYIQGKRSTSDHIVQAVNYIKDLQIKIKELNEKRNRVKKVISATTT 148

Query: 61  -------LESSSCNNQRCNLASPC--------CVVIKPYSGGLEIAISNCITEENFQLSG 120
                    SS  ++    L+S C         VV+ P   G+EI IS C+      LS 
Sbjct: 149 THSAIEECTSSLSSSAASTLSSSCSCVGDKHITVVVTPCLVGVEIIISCCLGRNKSCLSS 208

Query: 121 VMRVLL-EHNIQIESCASTKVNDQRMLHTVQTKVDDSIKIDLHELEQKL 150
           V+++L  E    + SC S +   QR +HT+ ++V+D  +I++ EL+ K+
Sbjct: 209 VLQMLAQEQRFSVVSCLSAR-RQQRFMHTIVSQVEDGKQINILELKDKI 256

[Close]
BLAST of Cla006230 vs. TrEMBL
Match: A0A0A0L9L0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G178580 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-55
Identity = 118/158 (74.68%), Postives = 139/158 (87.97%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLE-S 60
           M SLL NLRSLLPLEFIKGRR+R DIVDEAVNYIE+LRG+++ELHVKRDA +KRL+LE S
Sbjct: 69  MTSLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELHVKRDAIVKRLHLESS 128

Query: 61  SSCNNQRCNLASPCCVVIKPYSGGLEIAISN-CITEENFQLSGVMRVLLEHNIQIESCAS 120
           SSCNN   ++ S  CVVIK YSGGLEI ISN  I+E+NFQLSGVMRVL+E +I+IE+C+S
Sbjct: 129 SSCNN---DIPSTSCVVIKQYSGGLEIVISNGIISEQNFQLSGVMRVLIEQSIEIETCSS 188

Query: 121 TKVNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCNSE 157
           TK+N +RMLHT+QTKVDD  KIDLHEL+QKLY+VCNSE
Sbjct: 189 TKLN-ERMLHTIQTKVDDPTKIDLHELKQKLYQVCNSE 222

[Close]
BLAST of Cla006230 vs. TrEMBL
Match: D7T1U5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g02250 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-25
Identity = 69/154 (44.81%), Postives = 98/154 (63.64%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLESS 60
           MA+L  +LRSLLP+E+IKG+R+ +D + EAVNYI  L+ KI +L  KRDA  ++ N+ +S
Sbjct: 50  MANLNASLRSLLPIEYIKGKRSISDHMHEAVNYINDLQMKIQDLGNKRDALKRQCNMSAS 109

Query: 61  SCNNQRCNLASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESCASTK 120
              ++   +  P CVV+ P  GG+EI +S    EE   LS VM +L E  + + SC STK
Sbjct: 110 HLESRSSEICPPNCVVVSPCLGGVEILVSGGFREEGL-LSRVMELLFEERLSVVSCVSTK 169

Query: 121 VNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCN 155
           VN + +LHT+  KV D   +DL  L+QKL +  N
Sbjct: 170 VN-EGLLHTINCKVADPSCVDLSMLQQKLLDAAN 201

[Close]
BLAST of Cla006230 vs. TrEMBL
Match: B9R9K5_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1498390 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.5e-25
Identity = 71/154 (46.10%), Postives = 105/154 (68.18%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLE-- 60
           MA+L  +LRSLLPLE+IKG+R+ +D ++EAVNYI+HLR +I EL  KRD   +++N+   
Sbjct: 39  MATLHASLRSLLPLEYIKGKRSISDHMNEAVNYIKHLRKRIEELDTKRDELKQQMNIRDI 98

Query: 61  -SSSCNNQRCNLASPCCVVIKPYSGGLEIAISNCITE--ENFQLSGVMRVLLEHNIQIES 120
            S S      + +    V+I+P  GG+EI+ S+ + E  + F LS V++VLLE  I + +
Sbjct: 99  PSGSSGGSSGDCSPSSGVLIRPCLGGIEISFSSNLREKGQGFTLSRVLQVLLEAEISVVN 158

Query: 121 CASTKVNDQRMLHTVQTKVDDSIKIDLHELEQKL 150
           C ST VN +R+LHT+QT+V D   ++L EL+QKL
Sbjct: 159 CVSTNVN-KRVLHTIQTEVKDPACLNLSELQQKL 191

[Close]
BLAST of Cla006230 vs. TrEMBL
Match: A0A067JQS6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26191 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.6e-25
Identity = 69/153 (45.10%), Postives = 105/153 (68.63%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNL--- 60
           MA+L  +LRSLLPLE+IKG+R+ +D ++EAVNYI+HL+  I EL  KRD   ++ NL   
Sbjct: 91  MATLYSSLRSLLPLEYIKGKRSTSDHMNEAVNYIKHLQKGIKELKAKRDHFKQQNNLTGI 150

Query: 61  ESSSCNNQRCNLASPCC-VVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESC 120
            S   +    N  SP   V+++P SGG+EI +S+ + E++  LS +++VLLE  I + +C
Sbjct: 151 PSQIVSGSSSNCTSPSKEVIVRPCSGGIEIVLSSGLREQDLTLSRLLQVLLEAEISVVNC 210

Query: 121 ASTKVNDQRMLHTVQTKVDDSIKIDLHELEQKL 150
            STKVN +R+ HT+Q +V+D   ++L +L+QKL
Sbjct: 211 VSTKVN-ERVFHTIQAEVNDPTCLNLSKLQQKL 242

[Close]
BLAST of Cla006230 vs. TrEMBL
Match: B9I4H5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14080g PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.9e-25
Identity = 69/151 (45.70%), Postives = 103/151 (68.21%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNL--E 60
           M +L  +LR+LLPLEFIKG+R+ +D ++E+VNYI++L+ KI EL  KRD   K  NL  +
Sbjct: 87  MTTLYASLRALLPLEFIKGKRSISDHMNESVNYIKYLQKKIKELSAKRDGLKKSPNLSFD 146

Query: 61  SSSCNNQRCNLASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESCAS 120
           S S ++ + +  SP  V ++PY GG+E+   +    ++  LS V++VLLE  I + +C S
Sbjct: 147 SPSGSSNKYSPISP--VTLQPYPGGIEVVFDSDFRGQDSPLSRVLQVLLEEGISVVNCVS 206

Query: 121 TKVNDQRMLHTVQTKVDDSIKIDLHELEQKL 150
           TKVN +R+ HTVQT+V+D   ++L EL QKL
Sbjct: 207 TKVN-ERLFHTVQTEVNDPACLNLSELRQKL 234

[Close]
BLAST of Cla006230 vs. NCBI nr
Match: gi|659077314|ref|XP_008439139.1| (PREDICTED: transcription factor bHLH36-like [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 9.5e-56
Identity = 119/158 (75.32%), Postives = 141/158 (89.24%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLE-S 60
           MASLL NLRSLLPLEFIKGRR+R DIVDEAVNYIE+LRGKI+ELH+KRDA +KRL+LE S
Sbjct: 68  MASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGKINELHLKRDAIVKRLHLESS 127

Query: 61  SSCNNQRCNLASPCCVVIKPYSGGLEIAISN-CITEENFQLSGVMRVLLEHNIQIESCAS 120
           SSCNN   ++ S  CVVIK YSGGLEI ISN  I+E+NFQLSGVMRVL+E +I+IE+C+S
Sbjct: 128 SSCNN---DIPSTSCVVIKQYSGGLEIVISNGIISEQNFQLSGVMRVLIEQSIEIETCSS 187

Query: 121 TKVNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCNSE 157
           TK+N +RML+T+QTKVDDS KIDLHEL+Q+LY+VCNSE
Sbjct: 188 TKLN-ERMLYTIQTKVDDSTKIDLHELKQRLYQVCNSE 221

[Close]
BLAST of Cla006230 vs. NCBI nr
Match: gi|449460830|ref|XP_004148147.1| (PREDICTED: transcription factor bHLH36-like [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 2.1e-55
Identity = 118/158 (74.68%), Postives = 139/158 (87.97%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLE-S 60
           M SLL NLRSLLPLEFIKGRR+R DIVDEAVNYIE+LRG+++ELHVKRDA +KRL+LE S
Sbjct: 69  MTSLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELHVKRDAIVKRLHLESS 128

Query: 61  SSCNNQRCNLASPCCVVIKPYSGGLEIAISN-CITEENFQLSGVMRVLLEHNIQIESCAS 120
           SSCNN   ++ S  CVVIK YSGGLEI ISN  I+E+NFQLSGVMRVL+E +I+IE+C+S
Sbjct: 129 SSCNN---DIPSTSCVVIKQYSGGLEIVISNGIISEQNFQLSGVMRVLIEQSIEIETCSS 188

Query: 121 TKVNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCNSE 157
           TK+N +RMLHT+QTKVDD  KIDLHEL+QKLY+VCNSE
Sbjct: 189 TKLN-ERMLHTIQTKVDDPTKIDLHELKQKLYQVCNSE 222

[Close]
BLAST of Cla006230 vs. NCBI nr
Match: gi|743856809|ref|XP_011030012.1| (PREDICTED: transcription factor bHLH118-like [Populus euphratica])

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 70/151 (46.36%), Postives = 103/151 (68.21%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNL--E 60
           M +L   LR+LLPLEFIKG+R+ +D ++E+VNYI++L+ KI EL  KRD   K  NL  +
Sbjct: 87  MTTLYATLRALLPLEFIKGKRSISDHMNESVNYIKYLQNKIKELSAKRDGLKKLSNLSFD 146

Query: 61  SSSCNNQRCNLASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESCAS 120
           S S ++ + +  SP  V ++PY GG+E+   +    ++F LS V++VLLE  I + +C S
Sbjct: 147 SPSGSSNKYSPISP--VTLQPYPGGIEVVFDSDFRGQDFPLSRVLQVLLEEGISVVNCVS 206

Query: 121 TKVNDQRMLHTVQTKVDDSIKIDLHELEQKL 150
           TKVN +R+ HTVQT+V+D   ++L EL QKL
Sbjct: 207 TKVN-ERIFHTVQTEVNDPACLNLSELRQKL 234

[Close]
BLAST of Cla006230 vs. NCBI nr
Match: gi|296084087|emb|CBI24475.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 69/154 (44.81%), Postives = 98/154 (63.64%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLESS 60
           MA+L  +LRSLLP+E+IKG+R+ +D + EAVNYI  L+ KI +L  KRDA  ++ N+ +S
Sbjct: 50  MANLNASLRSLLPIEYIKGKRSISDHMHEAVNYINDLQMKIQDLGNKRDALKRQCNMSAS 109

Query: 61  SCNNQRCNLASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESCASTK 120
              ++   +  P CVV+ P  GG+EI +S    EE   LS VM +L E  + + SC STK
Sbjct: 110 HLESRSSEICPPNCVVVSPCLGGVEILVSGGFREEGL-LSRVMELLFEERLSVVSCVSTK 169

Query: 121 VNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCN 155
           VN + +LHT+  KV D   +DL  L+QKL +  N
Sbjct: 170 VN-EGLLHTINCKVADPSCVDLSMLQQKLLDAAN 201

[Close]
BLAST of Cla006230 vs. NCBI nr
Match: gi|731423046|ref|XP_002271172.2| (PREDICTED: transcription factor bHLH118 [Vitis vinifera])

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 69/154 (44.81%), Postives = 98/154 (63.64%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLESS 60
           MA+L  +LRSLLP+E+IKG+R+ +D + EAVNYI  L+ KI +L  KRDA  ++ N+ +S
Sbjct: 83  MANLNASLRSLLPIEYIKGKRSISDHMHEAVNYINDLQMKIQDLGNKRDALKRQCNMSAS 142

Query: 61  SCNNQRCNLASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESCASTK 120
              ++   +  P CVV+ P  GG+EI +S    EE   LS VM +L E  + + SC STK
Sbjct: 143 HLESRSSEICPPNCVVVSPCLGGVEILVSGGFREEGL-LSRVMELLFEERLSVVSCVSTK 202

Query: 121 VNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCN 155
           VN + +LHT+  KV D   +DL  L+QKL +  N
Sbjct: 203 VN-EGLLHTINCKVADPSCVDLSMLQQKLLDAAN 234

The following BLAST results are available for this feature:
BLAST of Cla006230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH118_ARATH7.1e-1941.61Transcription factor bHLH118 OS=Arabidopsis thaliana GN=BHLH118 PE=2 SV=1[more]
BH036_ARATH1.0e-1740.00Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1[more]
BH055_ARATH3.9e-1738.04Transcription factor bHLH55 OS=Arabidopsis thaliana GN=BHLH55 PE=2 SV=1[more]
BH126_ARATH1.9e-1635.03Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1[more]
BH125_ARATH2.1e-1533.14Transcription factor bHLH125 OS=Arabidopsis thaliana GN=BHLH125 PE=2 SV=1[more]
BLAST of Cla006230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9L0_CUCSA1.5e-5574.68Uncharacterized protein OS=Cucumis sativus GN=Csa_3G178580 PE=4 SV=1[more]
D7T1U5_VITVI1.2e-2544.81Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g02250 PE=4 SV=... [more]
B9R9K5_RICCO3.5e-2546.10DNA binding protein, putative OS=Ricinus communis GN=RCOM_1498390 PE=4 SV=1[more]
A0A067JQS6_JATCU4.6e-2545.10Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26191 PE=4 SV=1[more]
B9I4H5_POPTR7.9e-2545.70Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14080g PE=4 SV=1[more]
BLAST of Cla006230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077314|ref|XP_008439139.1|9.5e-5675.32PREDICTED: transcription factor bHLH36-like [Cucumis melo][more]
gi|449460830|ref|XP_004148147.1|2.1e-5574.68PREDICTED: transcription factor bHLH36-like [Cucumis sativus][more]
gi|743856809|ref|XP_011030012.1|1.3e-2546.36PREDICTED: transcription factor bHLH118-like [Populus euphratica][more]
gi|296084087|emb|CBI24475.3|1.7e-2544.81unnamed protein product [Vitis vinifera][more]
gi|731423046|ref|XP_002271172.2|1.7e-2544.81PREDICTED: transcription factor bHLH118 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR015660MASH1/Ascl1a-like
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006230Cla006230.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 4..50
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 1..37
score: 9
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 3..54
score: 1.1
IPR015660Achaete-scute transcription factor-relatedPANTHERPTHR13935ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATEDcoord: 1..156
score: 3.9
NoneNo IPR availablePANTHERPTHR13935:SF54TRANSCRIPTION FACTOR BHLH118-RELATEDcoord: 1..156
score: 3.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006230Cla97C01G003430Watermelon (97103) v2wmwmbB193
Cla006230Cucsa.251210Cucumber (Gy14) v1cgywmB479
Cla006230Lsi09G003270Bottle gourd (USVL1VR-Ls)lsiwmB024
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006230Watermelon (97103) v2wmwmbB206
Cla006230Watermelon (97103) v2wmwmbB219
Cla006230Wax gourdwgowmB213
Cla006230Watermelon (97103) v1wmwmB126
Cla006230Watermelon (97103) v1wmwmB140
Cla006230Cucumber (Gy14) v1cgywmB549
Cla006230Cucumber (Gy14) v1cgywmB662
Cla006230Cucurbita maxima (Rimu)cmawmB266
Cla006230Cucurbita maxima (Rimu)cmawmB316
Cla006230Cucurbita maxima (Rimu)cmawmB373
Cla006230Cucurbita maxima (Rimu)cmawmB564
Cla006230Cucurbita maxima (Rimu)cmawmB567
Cla006230Cucurbita maxima (Rimu)cmawmB872
Cla006230Cucurbita moschata (Rifu)cmowmB257
Cla006230Cucurbita moschata (Rifu)cmowmB310
Cla006230Cucurbita moschata (Rifu)cmowmB366
Cla006230Cucurbita moschata (Rifu)cmowmB558
Cla006230Cucurbita moschata (Rifu)cmowmB859
Cla006230Melon (DHL92) v3.5.1mewmB019
Cla006230Melon (DHL92) v3.5.1mewmB097
Cla006230Melon (DHL92) v3.5.1mewmB461
Cla006230Watermelon (Charleston Gray)wcgwmB137
Cla006230Watermelon (Charleston Gray)wcgwmB286
Cla006230Watermelon (Charleston Gray)wcgwmB334
Cla006230Cucumber (Chinese Long) v2cuwmB233
Cla006230Cucumber (Chinese Long) v2cuwmB400
Cla006230Cucumber (Chinese Long) v2cuwmB403
Cla006230Cucumber (Chinese Long) v2cuwmB498
Cla006230Cucurbita pepo (Zucchini)cpewmB032
Cla006230Cucurbita pepo (Zucchini)cpewmB182
Cla006230Cucurbita pepo (Zucchini)cpewmB227
Cla006230Cucurbita pepo (Zucchini)cpewmB703
Cla006230Cucurbita pepo (Zucchini)cpewmB705
Cla006230Bottle gourd (USVL1VR-Ls)lsiwmB020
Cla006230Bottle gourd (USVL1VR-Ls)lsiwmB366
Cla006230Cucumber (Gy14) v2cgybwmB217
Cla006230Cucumber (Gy14) v2cgybwmB376
Cla006230Cucumber (Gy14) v2cgybwmB378
Cla006230Cucumber (Gy14) v2cgybwmB465
Cla006230Melon (DHL92) v3.6.1medwmB021
Cla006230Melon (DHL92) v3.6.1medwmB015
Cla006230Melon (DHL92) v3.6.1medwmB095
Cla006230Melon (DHL92) v3.6.1medwmB447
Cla006230Silver-seed gourdcarwmB0009
Cla006230Silver-seed gourdcarwmB0708
Cla006230Silver-seed gourdcarwmB0874
Cla006230Silver-seed gourdcarwmB0920
Cla006230Silver-seed gourdcarwmB0937
Cla006230Cucumber (Chinese Long) v3cucwmB239
Cla006230Cucumber (Chinese Long) v3cucwmB427
Cla006230Cucumber (Chinese Long) v3cucwmB429
Cla006230Cucumber (Chinese Long) v3cucwmB524