Cucsa.251210 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.251210
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionBasic helix-loop-helix transcription factor
Locationscaffold02229 : 348860 .. 349446 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGAAGATTATGCACCGAGATCTTGAACGTGAAAGAAGAAAACAAATGGCCTCTCTTCTCACCAACCTTCGATCTTTGCTTCCTCTTGAATTTATAAAGGTAAAAAAGAAAAAAGAAAAAAAAAAACCCAATCTTTTTGCTTTAATTACCTTGTATTTTTGTTGATTATTTATGTAATTATTTATTGATTATTTTAGGGTAGGCGTAGTAGGGTTGATATTGTTGATGAAGCTGTGAATTATATTGAATATTTAAGAGGGAGGATGAATGAGCTTCATGTTAAAAGAGACGCGATAGTAAAGAGGCTGCATTTGGAATCATCCTCAAGTTGCAATAATGATATTCCTTCTACAAGTTGTGTTGTAATTAAGCAATATTCAGGTGGATTGGAGATTGTGATAAGTAATGGCATTATTTCAGAGCAGAATTTTCAACTTTCAGGAGTGATGAGGGTTTTGATTGAACAAAGTATTGAGATTGAAACTTGTTCTTCTACCAAATTAAATGAAAGGATGTTGCACACTATTCAGACAAAGGTTGTTTGATTATTTATTATTGCAGGATTTGAATCTTTTTTTTATATAG

mRNA sequence

AAAAGAAGATTATGCACCGAGATCTTGAACGTGAAAGAAGAAAACAAATGGCCTCTCTTCTCACCAACCTTCGATCTTTGCTTCCTCTTGAATTTATAAAGGGTAGGCGTAGTAGGGTTGATATTGTTGATGAAGCTGTGAATTATATTGAATATTTAAGAGGGAGGATGAATGAGCTTCATGTTAAAAGAGACGCGATACAATATTCAGGTGGATTGGAGATTGTGATAAGTAATGGCATTATTTCAGAGCAGAATTTTCAACTTTCAGGAGTGATGAGGGTTTTGATTGAACAAAGATGTTGCACACTATTCAGACAAAGGTTGTTTGATTATTTATTATTGCAGGATTTGAATCTTTTTTTTATATAG

Coding sequence (CDS)

AAAAGAAGATTATGCACCGAGATCTTGAACGTGAAAGAAGAAAACAAATGGCCTCTCTTCTCACCAACCTTCGATCTTTGCTTCCTCTTGAATTTATAAAGGGTAGGCGTAGTAGGGTTGATATTGTTGATGAAGCTGTGAATTATATTGAATATTTAAGAGGGAGGATGAATGAGCTTCATGTTAAAAGAGACGCGATACAATATTCAGGTGGATTGGAGATTGTGATAAGTAATGGCATTATTTCAGAGCAGAATTTTCAACTTTCAGGAGTGATGAGGGTTTTGATTGAACAAAGATGTTGCACACTATTCAGACAAAGGTTGTTTGATTATTTATTATTGCAGGATTTGAATCTTTTTTTTATATAG

Protein sequence

KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELHVKRDAIQYSGGLEIVISNGIISEQNFQLSGVMRVLIEQRCCTLFRQRLFDYLLLQDLNLFFI*
Homology
[Close]
BLAST of Cucsa.251210 vs. Swiss-Prot
Match: BH036_ARATH (Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.7e-18
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           +K+MHR+ ER+RR++MASL  +LRSLLPL FIKG+RS  D V+EAVNYI+YL+ ++ EL 
Sbjct: 2   EKMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELS 61

Query: 61  VKRDAIQ-YSGGLEIVISNGIISEQNFQLSGVMRVLIEQ-----------RCC 102
           V+RD +   S G  +  SNG   E    +SG   V++ Q           RCC
Sbjct: 62  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCC 114

[Close]
BLAST of Cucsa.251210 vs. Swiss-Prot
Match: BH118_ARATH (Transcription factor bHLH118 OS=Arabidopsis thaliana GN=BHLH118 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-13
Identity = 37/78 (47.44%), Postives = 56/78 (71.79%), Query Frame = 1 

Query: 1  KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
          +K++H+++E+ RR++MASL  +LRSLLPLEFI+G+RS  D V  AVNYI+YL+  + +++
Sbjct: 2  EKLVHKEIEKRRRQEMASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDIN 61

Query: 61 VKRDAIQYSGGLEIVISN 79
           KRD +    G     SN
Sbjct: 62 SKRDDLVLLSGRSFRSSN 79

[Close]
BLAST of Cucsa.251210 vs. Swiss-Prot
Match: BH126_ARATH (Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-11
Identity = 33/71 (46.48%), Postives = 51/71 (71.83%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           KK++HRD+ER+RR++MA+L   LR+ LPL++IKG+R+  D V+ AVN+I+    R+ EL 
Sbjct: 43  KKLLHRDIERQRRQEMATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKDTEARIKELS 102

Query: 61  VKRDAIQYSGG 72
            +RD +    G
Sbjct: 103 ARRDELSRETG 113

[Close]
BLAST of Cucsa.251210 vs. Swiss-Prot
Match: BH125_ARATH (Transcription factor bHLH125 OS=Arabidopsis thaliana GN=BHLH125 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-11
Identity = 31/67 (46.27%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           KK+ HRD+ER+RR++++SL   LR+LLP ++I+G+RS  D + +AVNYI+ L+ ++ EL+
Sbjct: 74  KKMKHRDIERQRRQEVSSLFKRLRTLLPFQYIQGKRSTSDHIVQAVNYIKDLQIKIKELN 133

Query: 61  VKRDAIQ 68
            KR+ ++
Sbjct: 134 EKRNRVK 140

[Close]
BLAST of Cucsa.251210 vs. Swiss-Prot
Match: BH120_ARATH (Transcription factor bHLH120 OS=Arabidopsis thaliana GN=BHLH120 PE=2 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 30/67 (44.78%), Postives = 52/67 (77.61%), Query Frame = 1 

Query: 1  KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
          KK++HR++ER+RR++MA L  +LRS LPL++IKG+R+  D V+ AV++I+  + R+ +L 
Sbjct: 27 KKLLHRNIERQRRQEMAILFASLRSQLPLKYIKGKRAMSDHVNGAVSFIKDTQTRIKDLS 86

Query: 61 VKRDAIQ 68
           +RD ++
Sbjct: 87 ARRDELK 93

[Close]
BLAST of Cucsa.251210 vs. TrEMBL
Match: A0A0A0L9L0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G178580 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.2e-41
Identity = 97/123 (78.86%), Postives = 97/123 (78.86%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           KKIMHRDLERERRKQM SLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH
Sbjct: 54  KKIMHRDLERERRKQMTSLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 113

Query: 61  VKRDAI-------------------------QYSGGLEIVISNGIISEQNFQLSGVMRVL 99
           VKRDAI                         QYSGGLEIVISNGIISEQNFQLSGVMRVL
Sbjct: 114 VKRDAIVKRLHLESSSSCNNDIPSTSCVVIKQYSGGLEIVISNGIISEQNFQLSGVMRVL 173

[Close]
BLAST of Cucsa.251210 vs. TrEMBL
Match: B9DH81_ARATH (AT5G51780 protein OS=Arabidopsis thaliana GN=At5g51780 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.3e-16
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           +K+MHR+ ER+RR++MASL  +LRSLLPL FIKG+RS  D V+EAVNYI+YL+ ++ EL 
Sbjct: 2   EKMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELS 61

Query: 61  VKRDAIQ-YSGGLEIVISNGIISEQNFQLSGVMRVLIEQ-----------RCC 102
           V+RD +   S G  +  SNG   E    +SG   V++ Q           RCC
Sbjct: 62  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCC 114

[Close]
BLAST of Cucsa.251210 vs. TrEMBL
Match: A0A067FDB0_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g036406mg PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.9e-16
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           KK+MHRD+ER+RR++MA+L  +LR+LLPLEFIKG+RS  D ++E VNY++YL  ++ EL 
Sbjct: 76  KKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEKKIKELG 135

Query: 61  VKRDAIQYSGGLEIVISNGIISEQNFQLSGVMRVLIEQ 99
           VKRD ++    L I  S    S+QN   S + R ++ Q
Sbjct: 136 VKRDELKRLSNLSISASQIETSDQN-DTSPINRFVVHQ 172

[Close]
BLAST of Cucsa.251210 vs. TrEMBL
Match: V4U702_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006628mg PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.9e-16
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           KK+MHRD+ER+RR++MA+L  +LR+LLPLEFIKG+RS  D ++E VNY++YL  ++ EL 
Sbjct: 76  KKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEKKIKELG 135

Query: 61  VKRDAIQYSGGLEIVISNGIISEQNFQLSGVMRVLIEQ 99
           VKRD ++    L I  S    S+QN   S + R ++ Q
Sbjct: 136 VKRDELKRLSNLSISASQIETSDQN-DTSPINRFVVHQ 172

[Close]
BLAST of Cucsa.251210 vs. TrEMBL
Match: A0A164YRR4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018135 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.0e-16
Identity = 55/133 (41.35%), Postives = 79/133 (59.40%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           KKIMHR++ER+RR+ M  L  +LRSLLPLEFIKG+RS  D +++AVNYI +L+G + EL 
Sbjct: 65  KKIMHREIERQRRQDMGKLHVSLRSLLPLEFIKGKRSISDHMEQAVNYINHLQGEIRELD 124

Query: 61  VKRDAIQYSG----------------------------------GLEIVISNGIISEQNF 100
           VK++ +  S                                   G+EI+I++G + E+N 
Sbjct: 125 VKKNNLIKSTPKKFFIDDPGKGTSDLCLLDDNNDISVTVTPCFCGVEIIITSGSM-EENL 184

[Close]
BLAST of Cucsa.251210 vs. TAIR10
Match: AT5G51780.1 (AT5G51780.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 92.0 bits (227), Expect = 2.7e-19
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           +K+MHR+ ER+RR++MASL  +LRSLLPL FIKG+RS  D V+EAVNYI+YL+ ++ EL 
Sbjct: 2   EKMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELS 61

Query: 61  VKRDAIQ-YSGGLEIVISNGIISEQNFQLSGVMRVLIEQ-----------RCC 102
           V+RD +   S G  +  SNG   E    +SG   V++ Q           RCC
Sbjct: 62  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCC 114

[Close]
BLAST of Cucsa.251210 vs. TAIR10
Match: AT4G25400.1 (AT4G25400.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14
Identity = 37/78 (47.44%), Postives = 56/78 (71.79%), Query Frame = 1 

Query: 1  KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
          +K++H+++E+ RR++MASL  +LRSLLPLEFI+G+RS  D V  AVNYI+YL+  + +++
Sbjct: 2  EKLVHKEIEKRRRQEMASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDIN 61

Query: 61 VKRDAIQYSGGLEIVISN 79
           KRD +    G     SN
Sbjct: 62 SKRDDLVLLSGRSFRSSN 79

[Close]
BLAST of Cucsa.251210 vs. TAIR10
Match: AT4G25410.1 (AT4G25410.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 6.4e-13
Identity = 33/71 (46.48%), Postives = 51/71 (71.83%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           KK++HRD+ER+RR++MA+L   LR+ LPL++IKG+R+  D V+ AVN+I+    R+ EL 
Sbjct: 43  KKLLHRDIERQRRQEMATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKDTEARIKELS 102

Query: 61  VKRDAIQYSGG 72
            +RD +    G
Sbjct: 103 ARRDELSRETG 113

[Close]
BLAST of Cucsa.251210 vs. TAIR10
Match: AT1G62975.1 (AT1G62975.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12
Identity = 31/67 (46.27%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           KK+ HRD+ER+RR++++SL   LR+LLP ++I+G+RS  D + +AVNYI+ L+ ++ EL+
Sbjct: 74  KKMKHRDIERQRRQEVSSLFKRLRTLLPFQYIQGKRSTSDHIVQAVNYIKDLQIKIKELN 133

Query: 61  VKRDAIQ 68
            KR+ ++
Sbjct: 134 EKRNRVK 140

[Close]
BLAST of Cucsa.251210 vs. TAIR10
Match: AT5G51790.1 (AT5G51790.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 30/67 (44.78%), Postives = 52/67 (77.61%), Query Frame = 1 

Query: 1  KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
          KK++HR++ER+RR++MA L  +LRS LPL++IKG+R+  D V+ AV++I+  + R+ +L 
Sbjct: 27 KKLLHRNIERQRRQEMAILFASLRSQLPLKYIKGKRAMSDHVNGAVSFIKDTQTRIKDLS 86

Query: 61 VKRDAIQ 68
           +RD ++
Sbjct: 87 ARRDELK 93

[Close]
BLAST of Cucsa.251210 vs. NCBI nr
Match: gi|449460830|ref|XP_004148147.1| (PREDICTED: transcription factor bHLH36-like [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 8.9e-41
Identity = 97/123 (78.86%), Postives = 97/123 (78.86%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           KKIMHRDLERERRKQM SLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH
Sbjct: 54  KKIMHRDLERERRKQMTSLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 113

Query: 61  VKRDAI-------------------------QYSGGLEIVISNGIISEQNFQLSGVMRVL 99
           VKRDAI                         QYSGGLEIVISNGIISEQNFQLSGVMRVL
Sbjct: 114 VKRDAIVKRLHLESSSSCNNDIPSTSCVVIKQYSGGLEIVISNGIISEQNFQLSGVMRVL 173

[Close]
BLAST of Cucsa.251210 vs. NCBI nr
Match: gi|659077314|ref|XP_008439139.1| (PREDICTED: transcription factor bHLH36-like [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 9.8e-40
Identity = 94/123 (76.42%), Postives = 98/123 (79.67%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           KKIMHRD+ERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRG++NELH
Sbjct: 53  KKIMHRDVERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGKINELH 112

Query: 61  VKRDAI-------------------------QYSGGLEIVISNGIISEQNFQLSGVMRVL 99
           +KRDAI                         QYSGGLEIVISNGIISEQNFQLSGVMRVL
Sbjct: 113 LKRDAIVKRLHLESSSSCNNDIPSTSCVVIKQYSGGLEIVISNGIISEQNFQLSGVMRVL 172

[Close]
BLAST of Cucsa.251210 vs. NCBI nr
Match: gi|15242184|ref|NP_199991.1| (transcription factor bHLH36 [Arabidopsis thaliana])

HSP 1 Score: 92.0 bits (227), Expect = 7.6e-16
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           +K+MHR+ ER+RR++MASL  +LRSLLPL FIKG+RS  D V+EAVNYI+YL+ ++ EL 
Sbjct: 2   EKMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELS 61

Query: 61  VKRDAIQ-YSGGLEIVISNGIISEQNFQLSGVMRVLIEQ-----------RCC 102
           V+RD +   S G  +  SNG   E    +SG   V++ Q           RCC
Sbjct: 62  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCC 114

[Close]
BLAST of Cucsa.251210 vs. NCBI nr
Match: gi|641846440|gb|KDO65323.1| (hypothetical protein CISIN_1g036406mg, partial [Citrus sinensis])

HSP 1 Score: 91.7 bits (226), Expect = 9.9e-16
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           KK+MHRD+ER+RR++MA+L  +LR+LLPLEFIKG+RS  D ++E VNY++YL  ++ EL 
Sbjct: 76  KKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEKKIKELG 135

Query: 61  VKRDAIQYSGGLEIVISNGIISEQNFQLSGVMRVLIEQ 99
           VKRD ++    L I  S    S+QN   S + R ++ Q
Sbjct: 136 VKRDELKRLSNLSISASQIETSDQN-DTSPINRFVVHQ 172

[Close]
BLAST of Cucsa.251210 vs. NCBI nr
Match: gi|567858222|ref|XP_006421794.1| (hypothetical protein CICLE_v10006628mg [Citrus clementina])

HSP 1 Score: 91.7 bits (226), Expect = 9.9e-16
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 1 

Query: 1   KKIMHRDLERERRKQMASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELH 60
           KK+MHRD+ER+RR++MA+L  +LR+LLPLEFIKG+RS  D ++E VNY++YL  ++ EL 
Sbjct: 76  KKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEKKIKELG 135

Query: 61  VKRDAIQYSGGLEIVISNGIISEQNFQLSGVMRVLIEQ 99
           VKRD ++    L I  S    S+QN   S + R ++ Q
Sbjct: 136 VKRDELKRLSNLSISASQIETSDQN-DTSPINRFVVHQ 172

The following BLAST results are available for this feature:
BLAST of Cucsa.251210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH036_ARATH4.7e-1846.90Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1[more]
BH118_ARATH2.1e-1347.44Transcription factor bHLH118 OS=Arabidopsis thaliana GN=BHLH118 PE=2 SV=1[more]
BH126_ARATH1.1e-1146.48Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1[more]
BH125_ARATH3.3e-1146.27Transcription factor bHLH125 OS=Arabidopsis thaliana GN=BHLH125 PE=2 SV=1[more]
BH120_ARATH2.1e-1044.78Transcription factor bHLH120 OS=Arabidopsis thaliana GN=BHLH120 PE=2 SV=2[more]
BLAST of Cucsa.251210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9L0_CUCSA6.2e-4178.86Uncharacterized protein OS=Cucumis sativus GN=Csa_3G178580 PE=4 SV=1[more]
B9DH81_ARATH5.3e-1646.90 protein OS=Arabidopsis thaliana GN=At5g51780 PE=2 SV=1[more]
A0A067FDB0_CITSI6.9e-1648.98Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g036406mg PE=4 S... [more]
V4U702_9ROSI6.9e-1648.98Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006628mg PE=4 SV=1[more]
A0A164YRR4_DAUCA9.0e-1641.35Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018135 PE=4 SV=1[more]
BLAST of Cucsa.251210 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51780.12.7e-1946.90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G25400.11.2e-1447.44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G25410.16.4e-1346.48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G62975.11.9e-1246.27 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G51790.11.2e-1144.78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of Cucsa.251210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449460830|ref|XP_004148147.1|8.9e-4178.86PREDICTED: transcription factor bHLH36-like [Cucumis sativus][more]
gi|659077314|ref|XP_008439139.1|9.8e-4076.42PREDICTED: transcription factor bHLH36-like [Cucumis melo][more]
gi|15242184|ref|NP_199991.1|7.6e-1646.90transcription factor bHLH36 [Arabidopsis thaliana][more]
gi|641846440|gb|KDO65323.1|9.9e-1648.98hypothetical protein CISIN_1g036406mg, partial [Citrus sinensis][more]
gi|567858222|ref|XP_006421794.1|9.9e-1648.98hypothetical protein CICLE_v10006628mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR015660MASH1/Ascl1a-like
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006468 protein phosphorylation
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0003899 DNA-directed RNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.251210.1Cucsa.251210.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 2..67
score: 4.1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 1..52
score: 1.1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 6..58
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 1..52
score: 13
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 1..69
score: 8.77
IPR015660Achaete-scute transcription factor-relatedPANTHERPTHR13935ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATEDcoord: 1..99
score: 1.0
NoneNo IPR availablePANTHERPTHR13935:SF54TRANSCRIPTION FACTOR BHLH118-RELATEDcoord: 1..99
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.251210Cla006230Watermelon (97103) v1cgywmB479
Cucsa.251210Cla011510Watermelon (97103) v1cgywmB480
Cucsa.251210Csa5G156220Cucumber (Chinese Long) v2cgycuB368
Cucsa.251210Csa3G178580Cucumber (Chinese Long) v2cgycuB366
Cucsa.251210MELO3C005610Melon (DHL92) v3.5.1cgymeB428
Cucsa.251210ClCG05G007640Watermelon (Charleston Gray)cgywcgB451
Cucsa.251210CSPI03G16380Wild cucumber (PI 183967)cgycpiB383
Cucsa.251210CSPI05G06040Wild cucumber (PI 183967)cgycpiB386
Cucsa.251210CmaCh16G001650Cucurbita maxima (Rimu)cgycmaB0711
Cucsa.251210CmoCh16G001700Cucurbita moschata (Rifu)cgycmoB0704
Cucsa.251210Lsi05G012840Bottle gourd (USVL1VR-Ls)cgylsiB416
Cucsa.251210Lsi09G003350Bottle gourd (USVL1VR-Ls)cgylsiB411
Cucsa.251210MELO3C005610.2Melon (DHL92) v3.6.1cgymedB422
Cucsa.251210MELO3C031789.2Melon (DHL92) v3.6.1cgymedB432
Cucsa.251210CsaV3_5G003410Cucumber (Chinese Long) v3cgycucB392
Cucsa.251210CsaV3_3G016560Cucumber (Chinese Long) v3cgycucB387
Cucsa.251210Cla97C01G003430Watermelon (97103) v2cgywmbB444
Cucsa.251210Cla97C05G089550Watermelon (97103) v2cgywmbB452
Cucsa.251210Bhi01G001025Wax gourdcgywgoB516
Cucsa.251210Bhi12G000309Wax gourdcgywgoB509
Cucsa.251210Carg16713Silver-seed gourdcarcgyB0993
Cucsa.251210Carg02488Silver-seed gourdcarcgyB1042
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.251210Cucsa.302580Cucumber (Gy14) v1cgycgyB126
The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.251210Cucumber (Gy14) v1cgycgyB132
Cucsa.251210Cucurbita maxima (Rimu)cgycmaB0710
Cucsa.251210Cucurbita maxima (Rimu)cgycmaB0716
Cucsa.251210Cucurbita maxima (Rimu)cgycmaB0718
Cucsa.251210Cucurbita moschata (Rifu)cgycmoB0702
Cucsa.251210Cucurbita moschata (Rifu)cgycmoB0709
Cucsa.251210Cucurbita moschata (Rifu)cgycmoB0711
Cucsa.251210Wild cucumber (PI 183967)cgycpiB388
Cucsa.251210Wild cucumber (PI 183967)cgycpiB391
Cucsa.251210Cucumber (Chinese Long) v2cgycuB370
Cucsa.251210Cucumber (Chinese Long) v2cgycuB372
Cucsa.251210Melon (DHL92) v3.5.1cgymeB431
Cucsa.251210Melon (DHL92) v3.5.1cgymeB439
Cucsa.251210Watermelon (Charleston Gray)cgywcgB445
Cucsa.251210Watermelon (Charleston Gray)cgywcgB447
Cucsa.251210Cucurbita pepo (Zucchini)cgycpeB0668
Cucsa.251210Cucurbita pepo (Zucchini)cgycpeB0673
Cucsa.251210Cucurbita pepo (Zucchini)cgycpeB0684
Cucsa.251210Cucurbita pepo (Zucchini)cgycpeB0686
Cucsa.251210Melon (DHL92) v3.6.1cgymedB426
Cucsa.251210Silver-seed gourdcarcgyB0006
Cucsa.251210Silver-seed gourdcarcgyB1053
Cucsa.251210Cucumber (Chinese Long) v3cgycucB395
Cucsa.251210Watermelon (97103) v2cgywmbB454