Cla006230.1 (mRNA) Watermelon (97103) v1

Overview
NameCla006230
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTranscription factor bHLH126 (AHRD V1 ***- BH126_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH
LocationChr5 : 7777673 .. 7778372 (+)
Sequence length471
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTCTTCTCATCAACCTCCGATCTTTGCTTCCTCTTGAATTTATAAAGGTAATGTAAATTAAAAAAAGAAAAAAAAAAGAAAAAGAAAAGAAATCATCTTTTTGCTTCATTTACCTTGTCTTTTTTTCGATTATATTTATGCAATTATTTTAAACCTTGGATGTTGTGGGGATTTTAGGGTAGGCGTACGAGGGCTGATATTGTTGATGAGGCTGTGAATTATATTGAACATTTAAGAGGGAAAATCAGTGAACTTCATGTTAAAAGAGATGCAACAATAAAGAGGCTGAATTTGGAATCCTCAAGTTGCAACAATCAAAGATGCAATCTTGCGTCTCCATGTTGTGTTGTAATTAAGCCATATTCAGGTGGGTTGGAGATTGCAATAAGTAATTGCATTACAGAGGAAAATTTTCAACTTTCAGGAGTGATGAGGGTTTTGCTTGAACACAACATTCAAATTGAAAGTTGTGCTTCTACTAAAGTAAATGATCAAAGGATGTTGCACACCGTTCAGACAAAGGTTGTTGCTTGATTGGAGGATTTGGATCTTTTTATTATTATTATTATTTTTTATTTTAGAGGGTGATTTTATCTTATGTTGATTGATTTTGTTTTTCAGGTTGATGATTCAATCAAGATTGATCTGCATGAACTGGAACAAAAACTATATGAAGTTTGCAATTCTGAGTGA

mRNA sequence

ATGGCCTCTCTTCTCATCAACCTCCGATCTTTGCTTCCTCTTGAATTTATAAAGGGTAGGCGTACGAGGGCTGATATTGTTGATGAGGCTGTGAATTATATTGAACATTTAAGAGGGAAAATCAGTGAACTTCATGTTAAAAGAGATGCAACAATAAAGAGGCTGAATTTGGAATCCTCAAGTTGCAACAATCAAAGATGCAATCTTGCGTCTCCATGTTGTGTTGTAATTAAGCCATATTCAGGTGGGTTGGAGATTGCAATAAGTAATTGCATTACAGAGGAAAATTTTCAACTTTCAGGAGTGATGAGGGTTTTGCTTGAACACAACATTCAAATTGAAAGTTGTGCTTCTACTAAAGTAAATGATCAAAGGATGTTGCACACCGTTCAGACAAAGGTTGATGATTCAATCAAGATTGATCTGCATGAACTGGAACAAAAACTATATGAAGTTTGCAATTCTGAGTGA

Coding sequence (CDS)

ATGGCCTCTCTTCTCATCAACCTCCGATCTTTGCTTCCTCTTGAATTTATAAAGGGTAGGCGTACGAGGGCTGATATTGTTGATGAGGCTGTGAATTATATTGAACATTTAAGAGGGAAAATCAGTGAACTTCATGTTAAAAGAGATGCAACAATAAAGAGGCTGAATTTGGAATCCTCAAGTTGCAACAATCAAAGATGCAATCTTGCGTCTCCATGTTGTGTTGTAATTAAGCCATATTCAGGTGGGTTGGAGATTGCAATAAGTAATTGCATTACAGAGGAAAATTTTCAACTTTCAGGAGTGATGAGGGTTTTGCTTGAACACAACATTCAAATTGAAAGTTGTGCTTCTACTAAAGTAAATGATCAAAGGATGTTGCACACCGTTCAGACAAAGGTTGATGATTCAATCAAGATTGATCTGCATGAACTGGAACAAAAACTATATGAAGTTTGCAATTCTGAGTGA

Protein sequence

MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLESSSCNNQRCNLASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESCASTKVNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCNSE
Homology
[Close]
BLAST of Cla006230 vs. Swiss-Prot
Match: BH118_ARATH (Transcription factor bHLH118 OS=Arabidopsis thaliana GN=BHLH118 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.1e-19
Identity = 62/149 (41.61%), Postives = 87/149 (58.39%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLESS 60
           MASL  +LRSLLPLEFI+G+R+ +D V  AVNYI++L+  I +++ KRD  +        
Sbjct: 17  MASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDINSKRDDLVLLSGRSFR 76

Query: 61  SCNNQRCNLASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESCASTK 120
           S N Q  N  S   VVI+P   G+EI +S   T      S V++VL EH + +     + 
Sbjct: 77  SSNEQEWNEISN-HVVIRPCLVGIEIVLSILQT----PFSSVLQVLREHGLYVLGYICSS 136

Query: 121 VNDQRMLHTVQTKVDDSIKIDLHELEQKL 150
           VND R++HT+Q +V+D   IDL +L+  L
Sbjct: 137 VND-RLIHTLQAEVNDLALIDLADLKDTL 159

[Close]
BLAST of Cla006230 vs. Swiss-Prot
Match: BH036_ARATH (Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-17
Identity = 62/155 (40.00%), Postives = 100/155 (64.52%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRD--ATIKRLNLE 60
           MASL  +LRSLLPL FIKG+R+ +D V+EAVNYI++L+ KI EL V+RD    + R +L 
Sbjct: 17  MASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELSVRRDDLMVLSRGSLL 76

Query: 61  SSSCNNQRCN---LASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIES 120
            SS  + + +   ++    VV++    G+EI +S+       + S V++VL E+ + + +
Sbjct: 77  GSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFSSVLQVLSEYGLCLLN 136

Query: 121 CASTKVNDQRMLHTVQTKVDD-SIKIDLHELEQKL 150
             S+ V+D R+++T+Q +V+D ++ IDL ELE++L
Sbjct: 137 SISSIVDD-RLVYTIQAEVNDMALMIDLAELEKRL 170

[Close]
BLAST of Cla006230 vs. Swiss-Prot
Match: BH055_ARATH (Transcription factor bHLH55 OS=Arabidopsis thaliana GN=BHLH55 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.9e-17
Identity = 62/163 (38.04%), Postives = 93/163 (57.06%), Query Frame = 1 

Query: 3   SLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLESSSC 62
           SL   LR LLP ++IKG+R+ AD V EAVNYI+ L+ KI E+  KRD   + +   SS  
Sbjct: 92  SLFKILRYLLPSQYIKGKRSSADHVLEAVNYIKDLQKKIKEVSEKRDRIKRSITHPSSRG 151

Query: 63  NNQRCNLASPCC---------VVIKPYSGGLEIAISNCITEENFQLSGVMRVLL-EHNIQ 122
                +LAS  C         VV++P   GLEI +S C   E+  LS V+++L  E    
Sbjct: 152 EFSIRSLASSTCSCVGDTNIAVVVRPCLIGLEIVVSCCNRHESC-LSSVLQLLAQEQCFN 211

Query: 123 IESCASTKVNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCNS 156
           I SC ST+++ Q  +HT+ ++V++ I++   EL++K+ ++  S
Sbjct: 212 IVSCISTRLH-QGFIHTIASEVEEGIEVYFSELQEKIIKIGTS 252

[Close]
BLAST of Cla006230 vs. Swiss-Prot
Match: BH126_ARATH (Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-16
Identity = 55/157 (35.03%), Postives = 85/157 (54.14%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLESS 60
           MA+L   LR+ LPL++IKG+R  +D V+ AVN+I+    +I EL  +RD   +       
Sbjct: 58  MATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKDTEARIKELSARRDELSRETGQGYK 117

Query: 61  S-----CNNQRCNLASPCCVVIKPYSGGLEIAI-SNCITEENFQLSGVMRVLLEHNIQIE 120
           S             + P  V+++P+  GLE+ + SN    E   LS V+  + E  +++ 
Sbjct: 118 SNPDPGKTGSDVGKSEPATVMVQPHVSGLEVVVSSNSSGPEALPLSKVLETIQEKGLEVM 177

Query: 121 SCASTKVNDQRMLHTVQTKVDDSIKIDLHELEQKLYE 152
           S  +T+VND R++HT+Q +V+    IDL  L+QKL E
Sbjct: 178 SSFTTRVND-RLMHTIQVEVNSFGCIDLLWLQQKLVE 213

[Close]
BLAST of Cla006230 vs. Swiss-Prot
Match: BH125_ARATH (Transcription factor bHLH125 OS=Arabidopsis thaliana GN=BHLH125 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-15
Identity = 56/169 (33.14%), Postives = 92/169 (54.44%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLN---- 60
           ++SL   LR+LLP ++I+G+R+ +D + +AVNYI+ L+ KI EL+ KR+   K ++    
Sbjct: 89  VSSLFKRLRTLLPFQYIQGKRSTSDHIVQAVNYIKDLQIKIKELNEKRNRVKKVISATTT 148

Query: 61  -------LESSSCNNQRCNLASPC--------CVVIKPYSGGLEIAISNCITEENFQLSG 120
                    SS  ++    L+S C         VV+ P   G+EI IS C+      LS 
Sbjct: 149 THSAIEECTSSLSSSAASTLSSSCSCVGDKHITVVVTPCLVGVEIIISCCLGRNKSCLSS 208

Query: 121 VMRVLL-EHNIQIESCASTKVNDQRMLHTVQTKVDDSIKIDLHELEQKL 150
           V+++L  E    + SC S +   QR +HT+ ++V+D  +I++ EL+ K+
Sbjct: 209 VLQMLAQEQRFSVVSCLSAR-RQQRFMHTIVSQVEDGKQINILELKDKI 256

[Close]
BLAST of Cla006230 vs. TrEMBL
Match: A0A0A0L9L0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G178580 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-55
Identity = 118/158 (74.68%), Postives = 139/158 (87.97%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLE-S 60
           M SLL NLRSLLPLEFIKGRR+R DIVDEAVNYIE+LRG+++ELHVKRDA +KRL+LE S
Sbjct: 69  MTSLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELHVKRDAIVKRLHLESS 128

Query: 61  SSCNNQRCNLASPCCVVIKPYSGGLEIAISN-CITEENFQLSGVMRVLLEHNIQIESCAS 120
           SSCNN   ++ S  CVVIK YSGGLEI ISN  I+E+NFQLSGVMRVL+E +I+IE+C+S
Sbjct: 129 SSCNN---DIPSTSCVVIKQYSGGLEIVISNGIISEQNFQLSGVMRVLIEQSIEIETCSS 188

Query: 121 TKVNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCNSE 157
           TK+N +RMLHT+QTKVDD  KIDLHEL+QKLY+VCNSE
Sbjct: 189 TKLN-ERMLHTIQTKVDDPTKIDLHELKQKLYQVCNSE 222

[Close]
BLAST of Cla006230 vs. TrEMBL
Match: D7T1U5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g02250 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-25
Identity = 69/154 (44.81%), Postives = 98/154 (63.64%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLESS 60
           MA+L  +LRSLLP+E+IKG+R+ +D + EAVNYI  L+ KI +L  KRDA  ++ N+ +S
Sbjct: 50  MANLNASLRSLLPIEYIKGKRSISDHMHEAVNYINDLQMKIQDLGNKRDALKRQCNMSAS 109

Query: 61  SCNNQRCNLASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESCASTK 120
              ++   +  P CVV+ P  GG+EI +S    EE   LS VM +L E  + + SC STK
Sbjct: 110 HLESRSSEICPPNCVVVSPCLGGVEILVSGGFREEGL-LSRVMELLFEERLSVVSCVSTK 169

Query: 121 VNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCN 155
           VN + +LHT+  KV D   +DL  L+QKL +  N
Sbjct: 170 VN-EGLLHTINCKVADPSCVDLSMLQQKLLDAAN 201

[Close]
BLAST of Cla006230 vs. TrEMBL
Match: B9R9K5_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1498390 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.5e-25
Identity = 71/154 (46.10%), Postives = 105/154 (68.18%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLE-- 60
           MA+L  +LRSLLPLE+IKG+R+ +D ++EAVNYI+HLR +I EL  KRD   +++N+   
Sbjct: 39  MATLHASLRSLLPLEYIKGKRSISDHMNEAVNYIKHLRKRIEELDTKRDELKQQMNIRDI 98

Query: 61  -SSSCNNQRCNLASPCCVVIKPYSGGLEIAISNCITE--ENFQLSGVMRVLLEHNIQIES 120
            S S      + +    V+I+P  GG+EI+ S+ + E  + F LS V++VLLE  I + +
Sbjct: 99  PSGSSGGSSGDCSPSSGVLIRPCLGGIEISFSSNLREKGQGFTLSRVLQVLLEAEISVVN 158

Query: 121 CASTKVNDQRMLHTVQTKVDDSIKIDLHELEQKL 150
           C ST VN +R+LHT+QT+V D   ++L EL+QKL
Sbjct: 159 CVSTNVN-KRVLHTIQTEVKDPACLNLSELQQKL 191

[Close]
BLAST of Cla006230 vs. TrEMBL
Match: A0A067JQS6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26191 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.6e-25
Identity = 69/153 (45.10%), Postives = 105/153 (68.63%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNL--- 60
           MA+L  +LRSLLPLE+IKG+R+ +D ++EAVNYI+HL+  I EL  KRD   ++ NL   
Sbjct: 91  MATLYSSLRSLLPLEYIKGKRSTSDHMNEAVNYIKHLQKGIKELKAKRDHFKQQNNLTGI 150

Query: 61  ESSSCNNQRCNLASPCC-VVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESC 120
            S   +    N  SP   V+++P SGG+EI +S+ + E++  LS +++VLLE  I + +C
Sbjct: 151 PSQIVSGSSSNCTSPSKEVIVRPCSGGIEIVLSSGLREQDLTLSRLLQVLLEAEISVVNC 210

Query: 121 ASTKVNDQRMLHTVQTKVDDSIKIDLHELEQKL 150
            STKVN +R+ HT+Q +V+D   ++L +L+QKL
Sbjct: 211 VSTKVN-ERVFHTIQAEVNDPTCLNLSKLQQKL 242

[Close]
BLAST of Cla006230 vs. TrEMBL
Match: B9I4H5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14080g PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.9e-25
Identity = 69/151 (45.70%), Postives = 103/151 (68.21%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNL--E 60
           M +L  +LR+LLPLEFIKG+R+ +D ++E+VNYI++L+ KI EL  KRD   K  NL  +
Sbjct: 87  MTTLYASLRALLPLEFIKGKRSISDHMNESVNYIKYLQKKIKELSAKRDGLKKSPNLSFD 146

Query: 61  SSSCNNQRCNLASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESCAS 120
           S S ++ + +  SP  V ++PY GG+E+   +    ++  LS V++VLLE  I + +C S
Sbjct: 147 SPSGSSNKYSPISP--VTLQPYPGGIEVVFDSDFRGQDSPLSRVLQVLLEEGISVVNCVS 206

Query: 121 TKVNDQRMLHTVQTKVDDSIKIDLHELEQKL 150
           TKVN +R+ HTVQT+V+D   ++L EL QKL
Sbjct: 207 TKVN-ERLFHTVQTEVNDPACLNLSELRQKL 234

[Close]
BLAST of Cla006230 vs. NCBI nr
Match: gi|659077314|ref|XP_008439139.1| (PREDICTED: transcription factor bHLH36-like [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 9.5e-56
Identity = 119/158 (75.32%), Postives = 141/158 (89.24%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLE-S 60
           MASLL NLRSLLPLEFIKGRR+R DIVDEAVNYIE+LRGKI+ELH+KRDA +KRL+LE S
Sbjct: 68  MASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGKINELHLKRDAIVKRLHLESS 127

Query: 61  SSCNNQRCNLASPCCVVIKPYSGGLEIAISN-CITEENFQLSGVMRVLLEHNIQIESCAS 120
           SSCNN   ++ S  CVVIK YSGGLEI ISN  I+E+NFQLSGVMRVL+E +I+IE+C+S
Sbjct: 128 SSCNN---DIPSTSCVVIKQYSGGLEIVISNGIISEQNFQLSGVMRVLIEQSIEIETCSS 187

Query: 121 TKVNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCNSE 157
           TK+N +RML+T+QTKVDDS KIDLHEL+Q+LY+VCNSE
Sbjct: 188 TKLN-ERMLYTIQTKVDDSTKIDLHELKQRLYQVCNSE 221

[Close]
BLAST of Cla006230 vs. NCBI nr
Match: gi|449460830|ref|XP_004148147.1| (PREDICTED: transcription factor bHLH36-like [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 2.1e-55
Identity = 118/158 (74.68%), Postives = 139/158 (87.97%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLE-S 60
           M SLL NLRSLLPLEFIKGRR+R DIVDEAVNYIE+LRG+++ELHVKRDA +KRL+LE S
Sbjct: 69  MTSLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELHVKRDAIVKRLHLESS 128

Query: 61  SSCNNQRCNLASPCCVVIKPYSGGLEIAISN-CITEENFQLSGVMRVLLEHNIQIESCAS 120
           SSCNN   ++ S  CVVIK YSGGLEI ISN  I+E+NFQLSGVMRVL+E +I+IE+C+S
Sbjct: 129 SSCNN---DIPSTSCVVIKQYSGGLEIVISNGIISEQNFQLSGVMRVLIEQSIEIETCSS 188

Query: 121 TKVNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCNSE 157
           TK+N +RMLHT+QTKVDD  KIDLHEL+QKLY+VCNSE
Sbjct: 189 TKLN-ERMLHTIQTKVDDPTKIDLHELKQKLYQVCNSE 222

[Close]
BLAST of Cla006230 vs. NCBI nr
Match: gi|743856809|ref|XP_011030012.1| (PREDICTED: transcription factor bHLH118-like [Populus euphratica])

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 70/151 (46.36%), Postives = 103/151 (68.21%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNL--E 60
           M +L   LR+LLPLEFIKG+R+ +D ++E+VNYI++L+ KI EL  KRD   K  NL  +
Sbjct: 87  MTTLYATLRALLPLEFIKGKRSISDHMNESVNYIKYLQNKIKELSAKRDGLKKLSNLSFD 146

Query: 61  SSSCNNQRCNLASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESCAS 120
           S S ++ + +  SP  V ++PY GG+E+   +    ++F LS V++VLLE  I + +C S
Sbjct: 147 SPSGSSNKYSPISP--VTLQPYPGGIEVVFDSDFRGQDFPLSRVLQVLLEEGISVVNCVS 206

Query: 121 TKVNDQRMLHTVQTKVDDSIKIDLHELEQKL 150
           TKVN +R+ HTVQT+V+D   ++L EL QKL
Sbjct: 207 TKVN-ERIFHTVQTEVNDPACLNLSELRQKL 234

[Close]
BLAST of Cla006230 vs. NCBI nr
Match: gi|296084087|emb|CBI24475.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 69/154 (44.81%), Postives = 98/154 (63.64%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLESS 60
           MA+L  +LRSLLP+E+IKG+R+ +D + EAVNYI  L+ KI +L  KRDA  ++ N+ +S
Sbjct: 50  MANLNASLRSLLPIEYIKGKRSISDHMHEAVNYINDLQMKIQDLGNKRDALKRQCNMSAS 109

Query: 61  SCNNQRCNLASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESCASTK 120
              ++   +  P CVV+ P  GG+EI +S    EE   LS VM +L E  + + SC STK
Sbjct: 110 HLESRSSEICPPNCVVVSPCLGGVEILVSGGFREEGL-LSRVMELLFEERLSVVSCVSTK 169

Query: 121 VNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCN 155
           VN + +LHT+  KV D   +DL  L+QKL +  N
Sbjct: 170 VN-EGLLHTINCKVADPSCVDLSMLQQKLLDAAN 201

[Close]
BLAST of Cla006230 vs. NCBI nr
Match: gi|731423046|ref|XP_002271172.2| (PREDICTED: transcription factor bHLH118 [Vitis vinifera])

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 69/154 (44.81%), Postives = 98/154 (63.64%), Query Frame = 1 

Query: 1   MASLLINLRSLLPLEFIKGRRTRADIVDEAVNYIEHLRGKISELHVKRDATIKRLNLESS 60
           MA+L  +LRSLLP+E+IKG+R+ +D + EAVNYI  L+ KI +L  KRDA  ++ N+ +S
Sbjct: 83  MANLNASLRSLLPIEYIKGKRSISDHMHEAVNYINDLQMKIQDLGNKRDALKRQCNMSAS 142

Query: 61  SCNNQRCNLASPCCVVIKPYSGGLEIAISNCITEENFQLSGVMRVLLEHNIQIESCASTK 120
              ++   +  P CVV+ P  GG+EI +S    EE   LS VM +L E  + + SC STK
Sbjct: 143 HLESRSSEICPPNCVVVSPCLGGVEILVSGGFREEGL-LSRVMELLFEERLSVVSCVSTK 202

Query: 121 VNDQRMLHTVQTKVDDSIKIDLHELEQKLYEVCN 155
           VN + +LHT+  KV D   +DL  L+QKL +  N
Sbjct: 203 VN-EGLLHTINCKVADPSCVDLSMLQQKLLDAAN 234

The following BLAST results are available for this feature:
BLAST of Cla006230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH118_ARATH7.1e-1941.61Transcription factor bHLH118 OS=Arabidopsis thaliana GN=BHLH118 PE=2 SV=1[more]
BH036_ARATH1.0e-1740.00Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1[more]
BH055_ARATH3.9e-1738.04Transcription factor bHLH55 OS=Arabidopsis thaliana GN=BHLH55 PE=2 SV=1[more]
BH126_ARATH1.9e-1635.03Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1[more]
BH125_ARATH2.1e-1533.14Transcription factor bHLH125 OS=Arabidopsis thaliana GN=BHLH125 PE=2 SV=1[more]
BLAST of Cla006230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9L0_CUCSA1.5e-5574.68Uncharacterized protein OS=Cucumis sativus GN=Csa_3G178580 PE=4 SV=1[more]
D7T1U5_VITVI1.2e-2544.81Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g02250 PE=4 SV=... [more]
B9R9K5_RICCO3.5e-2546.10DNA binding protein, putative OS=Ricinus communis GN=RCOM_1498390 PE=4 SV=1[more]
A0A067JQS6_JATCU4.6e-2545.10Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26191 PE=4 SV=1[more]
B9I4H5_POPTR7.9e-2545.70Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14080g PE=4 SV=1[more]
BLAST of Cla006230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077314|ref|XP_008439139.1|9.5e-5675.32PREDICTED: transcription factor bHLH36-like [Cucumis melo][more]
gi|449460830|ref|XP_004148147.1|2.1e-5574.68PREDICTED: transcription factor bHLH36-like [Cucumis sativus][more]
gi|743856809|ref|XP_011030012.1|1.3e-2546.36PREDICTED: transcription factor bHLH118-like [Populus euphratica][more]
gi|296084087|emb|CBI24475.3|1.7e-2544.81unnamed protein product [Vitis vinifera][more]
gi|731423046|ref|XP_002271172.2|1.7e-2544.81PREDICTED: transcription factor bHLH118 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR015660MASH1/Ascl1a-like
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla006230Cla006230gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla006230Cla006230.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla006230.1.cds1Cla006230.1.cds1CDS
Cla006230.1.cds2Cla006230.1.cds2CDS
Cla006230.1.cds3Cla006230.1.cds3CDS


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 4..50
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 1..37
score: 9
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 3..54
score: 1.1
IPR015660Achaete-scute transcription factor-relatedPANTHERPTHR13935ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATEDcoord: 1..156
score: 3.9
NoneNo IPR availablePANTHERPTHR13935:SF54TRANSCRIPTION FACTOR BHLH118-RELATEDcoord: 1..156
score: 3.9