Cla005078 (gene) Watermelon (97103) v1

NameCla005078
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionShugoshin-1 (AHRD V1 ***- B6TQG1_MAIZE)
LocationChr3 : 2865075 .. 2866618 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCTACCAACCTCTTTCTTTTTCTACTTGAAGTCTCCATCAAAACATAAACTACAAATAGAATTTCCTGAACGTTTCAACAGTAAAATAATCGACCTGAGTGAAGCTGAGTTGCAAAACCTTAGGGCAAGCATTCAGAAACTGCAGCTTCAGAATTGGCATCTTGCTCAATCAAACAGTCGCTTTTTAGCAGTAAGATTATATGCATATTCTAATTATTTCTCTGATGAGTGTTCATCTGACACCTCTCATATTTTAACTATAACCGTACACTGTTTTCCTCTTGCAGGAAATCAATTTGGGGAGAAAGAGAGTAAGTTTCAAAATGTCTTGAATTGATTTCTTGGTGCATTTATTTATTGTGATGCTCAATAATTTGTTCCTGATGTGTTCTAGATAAAATCACTGGAGCATGAGATTGAATGCAAAGAGGCTTTGCTAAGGGCAAAGTGTTTGAATGTAAAGGTAATTATCTTCGGACTTTTAGCGGGGACATTTATTTTACTTAGTTCCCAGTCTCTGTCATCTAACGATAAAGATTTGGAAGAATCATAATTCAATGTTTAGAACTATATAGATACTGTAGATGTCGCGTGGCAGCAATCATAAATTTGTAATTCAGGAAATATGTGACCTGCGAAACATGGAAGAATCTTAGCACCGTTGTGACACTTGCCACCATACTTTCGATGCTTAAGTCAAGGTTGTAACAAGAATCTTAAGGATGAGAATGAATTTACTTTATCTAAAGTTATAATCATGTATACAGAGGTTGTTTAACCTAGTGTTTTCCCTCTCCTCTTTTGGATTTGGACTATGGTGTGCAGATTGTCCACTCTTGGGCCGAAGGGTCACCCTCATCCTCATCCTATTCGAGGCCAGGGTAACTCTTCATGGGCCTCAACTCGTGGTTCGCCTGGCCCAAAATCTATTTAAGCCTTGGGTCGGGTATTTCGATGTCGAGTTTTGCTTTTGGTCTTATTCGAGCCCAATTTTTCTTGTTTATGTCTAAACCTTCTCGAATGGAAATAAATAAGTTGTGACAATGCATTCTTATAGATTGGTAGAAAAGATTCTCATTAAACCTAATTATTAAAGGATGAGACATTCTTAGCAGCTATATGTAGAATAACAACACTTCATTACAAACAAGAATCAACTAGCCTTTGGGGGGCAGATCAAAGTTTTTTAAACCCAAATTTTGGATAAGCTAGTTTTATGAAAAATACTGAACCAATTCTCATTGATGAACAATGGCTATATATTCTGACAGGGTAAGACAGAGATGAATAATAGAAATTCTGAGTGGCAGGTAATTTGGTGATTTCCTTTTTTCCAGGTATCTGATTTATTATTCTGCTCAGTCCTCACACTATGCTCACAAATATTTTACATAACTTCACCTATTTTCTTGGCTTCAGGAAGAAGAGAAGCTTACAGGGCAACCTTCACTTGCAGTTGTTAATACTGACACCAAATCTTGCAATGGAAATAGAAAGCCTCCAGGAAGAACTAGAAGTCACTGTAGGTTCATGAATTGA

mRNA sequence

ATGTTGCTACCAACCTCTTTCTTTTTCTACTTGAAGTCTCCATCAAAACATAAACTACAAATAGAATTTCCTGAACGTTTCAACAGTAAAATAATCGACCTGAGTGAAGCTGAGTTGCAAAACCTTAGGGCAAGCATTCAGAAACTGCAGCTTCAGAATTGGCATCTTGCTCAATCAAACAGTCGCTTTTTAGCAGAAATCAATTTGGGGAGAAAGAGAATAAAATCACTGGAGCATGAGATTGAATGCAAAGAGGCTTTGCTAAGGGCAAAGTGTTTGAATGTAAAGGGTAAGACAGAGATGAATAATAGAAATTCTGAGTGGCAGGAAGAAGAGAAGCTTACAGGGCAACCTTCACTTGCAGTTGTTAATACTGACACCAAATCTTGCAATGGAAATAGAAAGCCTCCAGGAAGAACTAGAAGTCACTGTAGGTTCATGAATTGA

Coding sequence (CDS)

ATGTTGCTACCAACCTCTTTCTTTTTCTACTTGAAGTCTCCATCAAAACATAAACTACAAATAGAATTTCCTGAACGTTTCAACAGTAAAATAATCGACCTGAGTGAAGCTGAGTTGCAAAACCTTAGGGCAAGCATTCAGAAACTGCAGCTTCAGAATTGGCATCTTGCTCAATCAAACAGTCGCTTTTTAGCAGAAATCAATTTGGGGAGAAAGAGAATAAAATCACTGGAGCATGAGATTGAATGCAAAGAGGCTTTGCTAAGGGCAAAGTGTTTGAATGTAAAGGGTAAGACAGAGATGAATAATAGAAATTCTGAGTGGCAGGAAGAAGAGAAGCTTACAGGGCAACCTTCACTTGCAGTTGTTAATACTGACACCAAATCTTGCAATGGAAATAGAAAGCCTCCAGGAAGAACTAGAAGTCACTGTAGGTTCATGAATTGA

Protein sequence

MLLPTSFFFYLKSPSKHKLQIEFPERFNSKIIDLSEAELQNLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALLRAKCLNVKGKTEMNNRNSEWQEEEKLTGQPSLAVVNTDTKSCNGNRKPPGRTRSHCRFMN
BLAST of Cla005078 vs. Swiss-Prot
Match: SGO1_MAIZE (Shugoshin-1 OS=Zea mays GN=SGO1 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-12
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 1

Query: 29  SKIIDLSEAELQNLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL 88
           +KIIDLS  E+  LR ++Q  + QN HL Q+NS+ LAEIN G+ RIK L+HE+ C  ALL
Sbjct: 77  TKIIDLSRVEIYKLRLALQASKQQNLHLTQTNSQMLAEINTGKDRIKMLQHELSCTTALL 136

Query: 89  RAKCLNVKGKTEMNNRNSEWQEEEKLTGQPSLAVV 124
           + K   +  K    N   +  + + L  + S   V
Sbjct: 137 KVKDSELDRKKNAGNVQQKGVKSQVLKTKASTVAV 171

BLAST of Cla005078 vs. TrEMBL
Match: A0A0A0LSM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097670 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.3e-48
Identity = 101/114 (88.60%), Postives = 106/114 (92.98%), Query Frame = 1

Query: 29  SKIIDLSEAELQNLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL 88
           +KII+LSEAEL+ LRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL
Sbjct: 62  NKIIELSEAELEKLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL 121

Query: 89  RAKCLNVKGKTEMNNRNSEWQEEEKLTGQPSLAVVNTDTKSCNGNRKPPGRTRS 143
           RAK L V+GK EMNNRNSEWQE EK TGQPSLA+VNTDTKS NGN KPPGRTRS
Sbjct: 122 RAKRLTVEGKAEMNNRNSEWQEGEKATGQPSLAIVNTDTKSGNGNIKPPGRTRS 175

BLAST of Cla005078 vs. TrEMBL
Match: A0A0D2QDM3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G111300 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 67/141 (47.52%), Postives = 92/141 (65.25%), Query Frame = 1

Query: 3   LPTSFFFYLKSPSKHKLQ-IEFPERFNSKIIDLSEAELQNLRASIQKLQLQNWHLAQSNS 62
           +P +   Y+    K K+  IE  E  N KII+LS  ELQNLR S+QKLQLQNW+LAQSNS
Sbjct: 42  IPPAAEDYINQLIKEKMTLIELVEERN-KIIELSGTELQNLRTSLQKLQLQNWNLAQSNS 101

Query: 63  RFLAEINLGRKRIKSLEHEIECKEALLRAKCLNVKGKTEMNNRNSEWQEEEKLTGQPSLA 122
           + LAE+NLGR R+K+L+HE+ CK+ALL+AK L  KGK ++N +N++   E+         
Sbjct: 102 QILAELNLGRDRVKALQHELVCKDALLKAKNLERKGKADINGQNTDHAAED--------- 161

Query: 123 VVNTDTKSCNGNRKPPGRTRS 143
               D K+C  NR+   R++S
Sbjct: 162 ----DDKACTRNRRRNARSQS 168

BLAST of Cla005078 vs. TrEMBL
Match: A0A0B0MSA1_GOSAR (Shugoshin-1 OS=Gossypium arboreum GN=F383_24385 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 63/140 (45.00%), Postives = 91/140 (65.00%), Query Frame = 1

Query: 3   LPTSFFFYLKSPSKHKLQIEFPERFNSKIIDLSEAELQNLRASIQKLQLQNWHLAQSNSR 62
           +P +   Y+    K K+ +       +KII+LS  ELQNLR S+QKLQLQNW+LAQSNS+
Sbjct: 42  IPPAAEDYINQLIKEKMTLIEVVEERNKIIELSGTELQNLRTSLQKLQLQNWNLAQSNSQ 101

Query: 63  FLAEINLGRKRIKSLEHEIECKEALLRAKCLNVKGKTEMNNRNSEWQEEEKLTGQPSLAV 122
            LAE+NLGR R+K+L+HE+ CK+ALL+AK L  KGK ++N++N++   E+          
Sbjct: 102 ILAELNLGRDRVKALQHELVCKDALLKAKNLERKGKADINDQNTDHAAED---------- 161

Query: 123 VNTDTKSCNGNRKPPGRTRS 143
              D K+C  NR+   R++S
Sbjct: 162 ---DDKACTRNRRRNARSQS 168

BLAST of Cla005078 vs. TrEMBL
Match: V4SFX3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028947mg PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.4e-23
Identity = 59/114 (51.75%), Postives = 84/114 (73.68%), Query Frame = 1

Query: 29  SKIIDLSEAELQNLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL 88
           +KII+LS +EL NLR SIQKLQLQNW+LAQSNS++LAEINLGR+++K+L+HE+ CK+AL+
Sbjct: 64  NKIIELSSSELHNLRISIQKLQLQNWNLAQSNSQYLAEINLGREKVKALQHELVCKDALI 123

Query: 89  RAKCLNVKGKTEMNNRNSEWQEEEKLTGQPSLAVVNTDTKSCNGNRKPPGRTRS 143
           +AK +  + KT  N  N+  QE EK+  +  +   N + K+C  NR+   R +S
Sbjct: 124 KAKSIVKERKTYSNCENTASQEGEKVI-EECVPKANENVKTCERNRRRSTRCKS 176

BLAST of Cla005078 vs. TrEMBL
Match: U5GGX7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22560g PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.9e-21
Identity = 54/114 (47.37%), Postives = 82/114 (71.93%), Query Frame = 1

Query: 29  SKIIDLSEAELQNLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL 88
           +KII+LS  +L++LR + Q LQLQNW+LAQSNS+ LAE+NLGR+++K+L+HE+ CK+AL 
Sbjct: 71  NKIIELSGNKLRDLRMNYQNLQLQNWNLAQSNSQMLAELNLGREKLKALQHEVVCKDALH 130

Query: 89  RAKCLNVKGKTEMNNRNSEWQEEEKLTGQPSLAVVNTDTKSCNGNRKPPGRTRS 143
           +A+ L  +GK ++N +N+  QE EK+     L   + D K C  + +  GR+RS
Sbjct: 131 KARNLEAQGKADVNCQNAVSQEVEKIEEAECLPEASNDIKPCGRSGRRTGRSRS 184

BLAST of Cla005078 vs. NCBI nr
Match: gi|659072061|ref|XP_008463238.1| (PREDICTED: uncharacterized protein LOC103501433 isoform X2 [Cucumis melo])

HSP 1 Score: 207.6 bits (527), Expect = 1.5e-50
Identity = 101/114 (88.60%), Postives = 109/114 (95.61%), Query Frame = 1

Query: 29  SKIIDLSEAELQNLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL 88
           +KII+LSEAEL+ LRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL
Sbjct: 62  NKIIELSEAELEKLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL 121

Query: 89  RAKCLNVKGKTEMNNRNSEWQEEEKLTGQPSLAVVNTDTKSCNGNRKPPGRTRS 143
           RAKCL V+GK+EMNNRNSEWQE E+ TG+PSLA+VNTDTKSCNGN KPPGRTRS
Sbjct: 122 RAKCLTVEGKSEMNNRNSEWQEGERATGKPSLAIVNTDTKSCNGNIKPPGRTRS 175

BLAST of Cla005078 vs. NCBI nr
Match: gi|659072059|ref|XP_008463230.1| (PREDICTED: uncharacterized protein LOC103501433 isoform X1 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 3.7e-49
Identity = 101/115 (87.83%), Postives = 109/115 (94.78%), Query Frame = 1

Query: 29  SKIIDLSEAELQNLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL 88
           +KII+LSEAEL+ LRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL
Sbjct: 62  NKIIELSEAELEKLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL 121

Query: 89  RAKCLNVK-GKTEMNNRNSEWQEEEKLTGQPSLAVVNTDTKSCNGNRKPPGRTRS 143
           RAKCL V+ GK+EMNNRNSEWQE E+ TG+PSLA+VNTDTKSCNGN KPPGRTRS
Sbjct: 122 RAKCLTVEVGKSEMNNRNSEWQEGERATGKPSLAIVNTDTKSCNGNIKPPGRTRS 176

BLAST of Cla005078 vs. NCBI nr
Match: gi|449459158|ref|XP_004147313.1| (PREDICTED: uncharacterized protein LOC101205365 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 1.8e-48
Identity = 101/114 (88.60%), Postives = 106/114 (92.98%), Query Frame = 1

Query: 29  SKIIDLSEAELQNLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL 88
           +KII+LSEAEL+ LRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL
Sbjct: 62  NKIIELSEAELEKLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL 121

Query: 89  RAKCLNVKGKTEMNNRNSEWQEEEKLTGQPSLAVVNTDTKSCNGNRKPPGRTRS 143
           RAK L V+GK EMNNRNSEWQE EK TGQPSLA+VNTDTKS NGN KPPGRTRS
Sbjct: 122 RAKRLTVEGKAEMNNRNSEWQEGEKATGQPSLAIVNTDTKSGNGNIKPPGRTRS 175

BLAST of Cla005078 vs. NCBI nr
Match: gi|659072063|ref|XP_008463245.1| (PREDICTED: uncharacterized protein LOC103501433 isoform X3 [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 9.0e-40
Identity = 89/114 (78.07%), Postives = 96/114 (84.21%), Query Frame = 1

Query: 29  SKIIDLSEAELQNLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL 88
           +KII+LSEAEL+ LRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL
Sbjct: 62  NKIIELSEAELEKLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL 121

Query: 89  RAKCLNVKGKTEMNNRNSEWQEEEKLTGQPSLAVVNTDTKSCNGNRKPPGRTRS 143
           RAKCL V             +E E+ TG+PSLA+VNTDTKSCNGN KPPGRTRS
Sbjct: 122 RAKCLTV-------------EEGERATGKPSLAIVNTDTKSCNGNIKPPGRTRS 162

BLAST of Cla005078 vs. NCBI nr
Match: gi|1009115938|ref|XP_015874505.1| (PREDICTED: shugoshin-1-like [Ziziphus jujuba])

HSP 1 Score: 119.4 bits (298), Expect = 5.3e-24
Identity = 61/114 (53.51%), Postives = 86/114 (75.44%), Query Frame = 1

Query: 29  SKIIDLSEAELQNLRASIQKLQLQNWHLAQSNSRFLAEINLGRKRIKSLEHEIECKEALL 88
           +KII+LS  ELQ +RAS QKLQLQNW+LAQSNS+ LAE++LGR+++K+L+HE+ CK+ALL
Sbjct: 68  NKIIELSGEELQKMRASFQKLQLQNWNLAQSNSQMLAELHLGREKVKALQHELLCKDALL 127

Query: 89  RAKCLNVKGKTEMNNRNSEWQEEEKLTGQPSLAVVNTDTKSCNGNRKPPGRTRS 143
           RAK L ++GK E+N  N   ++E +   Q +L   +TD K C+ NR+   R+RS
Sbjct: 128 RAKKLELEGKAEVNCHNKIARQEGQ---QAALVAASTDDKPCSQNRRRTTRSRS 178

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SGO1_MAIZE2.7e-1241.05Shugoshin-1 OS=Zea mays GN=SGO1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LSM0_CUCSA1.3e-4888.60Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097670 PE=4 SV=1[more]
A0A0D2QDM3_GOSRA1.1e-2347.52Uncharacterized protein OS=Gossypium raimondii GN=B456_009G111300 PE=4 SV=1[more]
A0A0B0MSA1_GOSAR1.1e-2345.00Shugoshin-1 OS=Gossypium arboreum GN=F383_24385 PE=4 SV=1[more]
V4SFX3_9ROSI5.4e-2351.75Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028947mg PE=4 SV=1[more]
U5GGX7_POPTR2.9e-2147.37Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22560g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659072061|ref|XP_008463238.1|1.5e-5088.60PREDICTED: uncharacterized protein LOC103501433 isoform X2 [Cucumis melo][more]
gi|659072059|ref|XP_008463230.1|3.7e-4987.83PREDICTED: uncharacterized protein LOC103501433 isoform X1 [Cucumis melo][more]
gi|449459158|ref|XP_004147313.1|1.8e-4888.60PREDICTED: uncharacterized protein LOC101205365 [Cucumis sativus][more]
gi|659072063|ref|XP_008463245.1|9.0e-4078.07PREDICTED: uncharacterized protein LOC103501433 isoform X3 [Cucumis melo][more]
gi|1009115938|ref|XP_015874505.1|5.3e-2453.51PREDICTED: shugoshin-1-like [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045132 meiotic chromosome segregation
cellular_component GO:0043229 intracellular organelle
cellular_component GO:0005575 cellular_component
cellular_component GO:0000775 chromosome, centromeric region
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU69640watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla005078Cla005078.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU69640WMU69640transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 32..52
scor
NoneNo IPR availablePANTHERPTHR34373FAMILY NOT NAMEDcoord: 30..136
score: 2.2
NoneNo IPR availablePANTHERPTHR34373:SF3SUBFAMILY NOT NAMEDcoord: 30..136
score: 2.2