Cla004728 (gene) Watermelon (97103) v1

Overview
NameCla004728
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 32499603 .. 32499824 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTGAGTGAGATGAGGACAAGGCAACGGCGGAGCATTCAGCCGGCGATGTTCCGGGCGTCGGAGGAGAGGAAAGTGGCCACCGGAAGAAGCAGTGGGAAGAAGACGACGGTTCAAGCGCTATGGAAGGTTGTTAGGGCTATGGTAATGAGCTGCAGTAGCAGCAGCAATGAAAACGGCGCCGTAAAGGGTTCCTACAGGCCAATCTCGGTCGTGTGA

mRNA sequence

ATGGAACTGAGTGAGATGAGGACAAGGCAACGGCGGAGCATTCAGCCGGCGATGTTCCGGGCGTCGGAGGAGAGGAAAGTGGCCACCGGAAGAAGCAGTGGGAAGAAGACGACGGTTCAAGCGCTATGGAAGGTTGTTAGGGCTATGGTAATGAGCTGCAGTAGCAGCAGCAATGAAAACGGCGCCGTAAAGGGTTCCTACAGGCCAATCTCGGTCGTGTGA

Coding sequence (CDS)

ATGGAACTGAGTGAGATGAGGACAAGGCAACGGCGGAGCATTCAGCCGGCGATGTTCCGGGCGTCGGAGGAGAGGAAAGTGGCCACCGGAAGAAGCAGTGGGAAGAAGACGACGGTTCAAGCGCTATGGAAGGTTGTTAGGGCTATGGTAATGAGCTGCAGTAGCAGCAGCAATGAAAACGGCGCCGTAAAGGGTTCCTACAGGCCAATCTCGGTCGTGTGA

Protein sequence

MELSEMRTRQRRSIQPAMFRASEERKVATGRSSGKKTTVQALWKVVRAMVMSCSSSSNENGAVKGSYRPISVV
Homology
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BLAST of Cla004728 vs. NCBI nr
Match: gi|778708557|ref|XP_011656236.1| (PREDICTED: uncharacterized protein LOC105435687 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 6.3e-10
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 1 

Query: 1   MELSEMRTRQRRSIQPAMFR--ASEERKVATGRSSGKKTTV-QALWKVVRAMVMSCSSSS 60
           MELSEMR RQRRS++    R  +SEERKV  GRS GKKTT  QAL KV+RA+V+ CSSS+
Sbjct: 210 MELSEMRIRQRRSMRLPEQRQPSSEERKVEKGRSKGKKTTTFQALCKVLRALVIGCSSSN 269

Query: 61  NENGAV 64
           + NGA+
Sbjct: 270 HRNGAL 275

The following BLAST results are available for this feature:
BLAST of Cla004728 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778708557|ref|XP_011656236.1|6.3e-1063.64PREDICTED: uncharacterized protein LOC105435687 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU69972watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla004728Cla004728.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU69972WMU69972transcribed_cluster